Trimin1|7255|CE7254_655 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|7255
Unique NameTrimin1|7255|CE7254_655
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length221
Homology
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 415 bits (1066), Expect = 3.300e-146
Identity = 204/220 (92.73%), Postives = 212/220 (96.36%), Query Frame = 0
Query:    1 MMSKVLALSAFAAGTASAFMQHAPLRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            MMSK +A  A  AG+ SAF+QHAPLRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTI WYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSA+PWDALQQVYAERPLA+AQILLAIFACEA+GQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAM+AIA FFVQENLTGQGPIEQIYAGH+NPFGDGQGVF
Sbjct:    1 MMSKAVAGLALVAGSVSAFVQHAPLRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQIYAGHINPFGDGQGVF 220          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 272 bits (696), Expect = 6.810e-90
Identity = 143/215 (66.51%), Postives = 167/215 (77.67%), Query Frame = 0
Query:    7 ALSAFAAGTASAFMQHAPLRTGVVSRSAGPV-MKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            A++A   G+ASAF+  AP +   V++S+G + MKLG   EGL+GSDLEL  +DPLGFTNN  P  + WYRAAELKHGRVAMLAALG++ QS+YHLPDPVFS+SAKPW AL +V  ERPLA  QI LAIFACEA+GQA QAKPGQA GDL WDPLNL+ S+ E +E+ QLRELKNGRLAMIAI A  VQENLTG G IE      +NPFGDG+G F
Sbjct:    6 AVAALMVGSASAFL--APAQFNSVAKSSGALSMKLGSSAEGLIGSDLELPEFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDPVFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAIGQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIEAYRENAINPFGDGKGFF 218          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: W7TCK1_9STRA (Chloroplast light harvesting protein isoform 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCK1_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.330e-79
Identity = 128/185 (69.19%), Postives = 141/185 (76.22%), Query Frame = 0
Query:   38 MKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            MKLG   +GL GSD+E   +DPLGFTNN  P+T+ WYRAAELKHGRVAMLAALG+I Q +Y LPD   VFS   +P +AL +V AERPLA  QI LAIFA EALGQ  QAKPGQAPGDL WDPLNLK  DPE + KVQ RELKNGRLAMIAIA   VQENLTG G IEQ   G +NPFGDG+G F
Sbjct:   35 MKLGSSAQGLAGSDIEFPEFDPLGFTNNPKPETLDWYRAAELKHGRVAMLAALGQIVQHFYTLPDASGVFSAGDRPIEALNKVVAERPLAAIQIGLAIFAVEALGQFNQAKPGQAPGDLGWDPLNLKSDDPEIYAKVQNRELKNGRLAMIAIAGMLVQENLTGLGVIEQWVKGDINPFGDGRGFF 219          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A7S4UG07_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG07_9DINO)

HSP 1 Score: 216 bits (551), Expect = 7.170e-69
Identity = 108/148 (72.97%), Postives = 122/148 (82.43%), Query Frame = 0
Query:   73 WYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            WYRAAELKHGRVAMLAALG+IFQS+Y LPDPVF++ A PW A+ +VY ERPLA+ QILLA FACEA G   QA+PGQAPGDL +DPLNLK +DPE +E+VQLRELKNGRLAM AIAA  VQENLTG G IE    G +NPFGDG+G F
Sbjct:    1 WYRAAELKHGRVAMLAALGQIFQSFYTLPDPVFAEKANPWQAMIKVYEERPLAMVQILLAAFACEAAGAFIQARPGQAPGDLGFDPLNLKSNDPEIFERVQLRELKNGRLAMWAIAAMIVQENLTGYGVIEAYRQGVINPFGDGKGYF 148          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A0G4GYX1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GYX1_VITBC)

HSP 1 Score: 211 bits (536), Expect = 1.370e-65
Identity = 115/201 (57.21%), Postives = 141/201 (70.15%), Query Frame = 0
Query:    8 LSAFAAGTASAFMQHAP--LRTGVVSRSAGPVMKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDP--VFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQ 204
            L+  AA  ASAF+ +A   L++   S    P MKLG   +GL+GSDLE   +DPLGFTNN + +T+ WYRAAELKHGRV MLAALG++ QS++HLPDP  VF  +   + A  +V +ERP A  QILLAIFA E LG   QAKPGQAPGDL++DP  ++  DPE WE  QLRELKNGRLAMI I A  VQE ++G+G I Q
Sbjct:   12 LAVVAAEDASAFVPNASPLLKSPKRSLRTTPSMKLGTNAQGLIGSDLEWPEFDPLGFTNNISDETLEWYRAAELKHGRVCMLAALGQLVQSFWHLPDPSGVFDSTDSSFGAFNKVVSERPWAAIQILLAIFAVEVLGAKTQAKPGQAPGDLDFDPFKVRSDDPEIWEATQLRELKNGRLAMIGITAMLVQEAISGKGVIAQ 212          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A835Z156_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z156_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.340e-62
Identity = 106/177 (59.89%), Postives = 128/177 (72.32%), Query Frame = 0
Query:   45 EGLVGSDLELA-TWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            +GLVG+ +E    WDP    +  + + +AWYRAAELKHGRV MLAA+G + Q Y+ LPDPVFS + K  DA+ Q+Y ERP AI QILLAI A E LG + Q     APGDL WDPL L P DPE    +QL+ELKNGRLAM+A A FF+QE LTGQG +EQI +GH++PFGDGQGVF
Sbjct:   43 DGLVGASVETGGVWDPANLASKASEEDLAWYRAAELKHGRVCMLAAVGCLVQGYWQLPDPVFSNT-KAVDAVAQIYTERPGAIYQILLAIAAIEVLGSSIQKY--TAPGDLKWDPLGLAPEDPEELATLQLKELKNGRLAMVATAGFFLQEALTGQGAVEQITSGHLSPFGDGQGVF 216          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: W7TEK9_9STRA (Fucoxanthin chlorophyll a c binding protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEK9_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.390e-62
Identity = 112/208 (53.85%), Postives = 145/208 (69.71%), Query Frame = 0
Query:   15 TASAFMQHAPL-RTGVVSRSAGPV-MKLGPGGEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            TASAF+  A L  +    R+ G V M +     G+VGSD+E+  +DPLG   N++ +T+ WYRAAELKHGRV MLA++G + Q  YHLPD  F +++KP DAL +V +ERPLA  QI +AI A E LG + Q     APGDL +DPL LKP DPE   ++QL+ELKNGRLAM+A A    QE +TGQGP+EQ+ +GH++PFGDGQG F
Sbjct:   26 TASAFLAPASLPSSSSFRRTQGRVSMDI----SGIVGSDVEVPEFDPLGLAKNKDEETLGWYRAAELKHGRVCMLASVGYLVQGLYHLPDGPF-EASKPIDALLKVSSERPLAAVQIAIAIAALEVLGASIQKY--TAPGDLTFDPLGLKPEDPEELAELQLKELKNGRLAMLATAGLAAQEYVTGQGPVEQLLSGHISPFGDGQGAF 226          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A4D9D759_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D759_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.640e-60
Identity = 103/175 (58.86%), Postives = 129/175 (73.71%), Query Frame = 0
Query:   46 GLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            GL+GSD+E   +DP    + ++P+ +AWYR+AELKHGR+ MLAALG + QS YHLPD VFS S K  DAL QV AERP AIAQIL+AI A E  G A  A  G+APGD  +DPLNLKP   E + ++QL+E+KNGRLAM+ +A   +QE LT QG +EQI +GH++PF DGQGVF
Sbjct:  147 GLIGSDVEAIRFDPWNLASERDPEGLAWYRSAELKHGRICMLAALGLLVQSSYHLPDEVFSNS-KGLDALFQVSAERPQAIAQILIAIGAIEVAGLA--ASEGKAPGDFGFDPLNLKPKTEEAFNELQLKEIKNGRLAMVGVAGMLIQETLTNQGVLEQINSGHLSPFNDGQGVF 318          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A0G4F0S3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F0S3_VITBC)

HSP 1 Score: 189 bits (480), Expect = 4.380e-57
Identity = 110/213 (51.64%), Postives = 137/213 (64.32%), Query Frame = 0
Query:    6 LALSAFAAGTASAFMQHAPLRTGVVSRSAGPV----MKLGPG-GEGLVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPF 213
            LAL + A G        AP R G +  S  P     M L P    GLVG+D++   +DPLG +   + +T+ WYRAAELKHGRVAMLAALG + Q+ Y LPD  F Q A P +A+ ++++ERPLAI QIL AI A E LG   Q +     GDL WDPL +KP+DPE + K+QLRELKNGRLAMI++     QE LT QGPI+QI  G+VNPF
Sbjct:   11 LALCSSALGGEETAFVGAPARLGGLRASRSPSRTMQMALDPSFAGGLVGNDIDAPNFDPLGLSKTADDETLKWYRAAELKHGRVAMLAALGFLVQNIYQLPDSPF-QEANPINAVYKLWSERPLAIMQILTAIAAIEVLGNQVQLQTEDG-GDLKWDPLGIKPNDPEEFRKMQLRELKNGRLAMISVLGMTAQEALTDQGPIDQILTGNVNPF 221          
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Match: A0A0G4FYZ7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FYZ7_9ALVE)

HSP 1 Score: 188 bits (477), Expect = 1.060e-55
Identity = 102/180 (56.67%), Postives = 123/180 (68.33%), Query Frame = 0
Query:   47 LVGSDLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVF-SQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQAPGDLNWDPLNLKPS-----DPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQGPIEQIYAGHVNPFGDGQGVF 220
            +VGSD+EL  +DP G + +  P+T AWYRAAELKH R+ MLAALG   Q    LPDPVF S     W AL+ V  +RP A+AQILLAI A E L    Q   G+APGD  WDPL L+ S     +PE +E +QLRELKNGRLAMI++A    Q+ LTGQG  EQI +GH++PFGDGQGVF
Sbjct:  116 VVGSDVELPLFDPWGLSASIKPETFAWYRAAELKHARICMLAALGLFIQPLAQLPDPVFQSDPDSAWSALEAVSTQRPAAVAQILLAIAAIETLSVNLQE--GRAPGDYGWDPLKLQKSQGLEGNPEKFEAMQLRELKNGRLAMISVAGMLYQQYLTGQGTWEQIASGHISPFGDGQGVF 293          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|7255 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT25_9STRA3.300e-14692.73Light harvesting complex protein n=2 Tax=Tribonema... [more]
FCP_CHAMQ6.810e-9066.51Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]
W7TCK1_9STRA4.330e-7969.19Chloroplast light harvesting protein isoform 4 n=2... [more]
A0A7S4UG07_9DINO7.170e-6972.97Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A0G4GYX1_VITBC1.370e-6557.21Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A835Z156_9STRA1.340e-6259.89Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7TEK9_9STRA7.390e-6253.85Fucoxanthin chlorophyll a c binding protein n=3 Ta... [more]
A0A4D9D759_9STRA4.640e-6058.86Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4F0S3_VITBC4.380e-5751.64Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4FYZ7_9ALVE1.060e-5556.67Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 44..218
e-value: 7.0E-46
score: 158.6
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 6..207
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 47..214
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 53..194
e-value: 1.5E-36
score: 126.3
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 6..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_11contigContig_11:860523..865298 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|7255mRNA_4786Tribonema minus UTEX_B_3156 mRNAContig_11 860363..865324 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|7255|CE7254_655 ID=Trimin1|7255|CE7254_655|Name=jgi.p|Trimin1|7255|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp
MMSKVLALSAFAAGTASAFMQHAPLRTGVVSRSAGPVMKLGPGGEGLVGS
DLELATWDPLGFTNNQNPDTIAWYRAAELKHGRVAMLAALGEIFQSYYHL
PDPVFSQSAKPWDALQQVYAERPLAIAQILLAIFACEALGQAQQAKPGQA
PGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMIAIAAFFVQENLTGQG
PIEQIYAGHVNPFGDGQGVF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln