mRNA_4637 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349627
Unique NamemRNA_4637
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349627 vs. uniprot
Match: A0A836CDT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDT6_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.680e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 MTTTLALINSMLLASRNNAQRAGLKYQDLLVEYPAVLQALESAAPATLAARNRRIVRASDVIVKQKPLPQFGRHSVRQALVAAXXXXXXXXAGLA 285
            MTTTLALINSMLLASRNNAQRAGLKYQDLLVEYPAVLQALESAAPATLAARNRRIVRASDVIVKQKPLPQFGRHSVRQALVAAXXXXXXXXAGLA
Sbjct:    1 MTTTLALINSMLLASRNNAQRAGLKYQDLLVEYPAVLQALESAAPATLAARNRRIVRASDVIVKQKPLPQFGRHSVRQALVAAXXXXXXXXAGLA 95
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BLAST of jgi.p|Trimin1|349627 vs. uniprot
Match: A0A835YW04_9STRA (Cytochrome b-c1 complex subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW04_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.190e-9
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   67 GLKYQDLLVEYPAVLQALESAAPATLAARNRRIVRASDVIVKQKPLP 207
            GLKYQDLL+EY  V  ALE A PA + ARNRR+ RASDV +KQKPLP
Sbjct:   25 GLKYQDLLIEYDDVNTALERADPALVQARNRRLARASDVSLKQKPLP 71
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349627 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CDT6_9STRA2.680e-46100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YW04_9STRA1.190e-970.21Cytochrome b-c1 complex subunit 7 n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:541409..542571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349627|estExt_Genemark1.C_Ctg_460084
Hectar predicted targeting categoryother localisation
TranscriptId349949
TrackFilteredModels1
ProteinId349627
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349627gene_4637Tribonema minus UTEX_B_3156 geneContig_46 541409..542571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4637_1exon_4637_1Tribonema minus UTEX_B_3156 exonContig_46 541409..541475 +
exon_4637_2exon_4637_2Tribonema minus UTEX_B_3156 exonContig_46 542051..542196 +
exon_4637_3exon_4637_3Tribonema minus UTEX_B_3156 exonContig_46 542282..542571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4637CDS_4637Tribonema minus UTEX_B_3156 CDSContig_46 541409..541475 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4637UTR3_4637Tribonema minus UTEX_B_3156 three_prime_UTRContig_46 542357..542571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349627Trimin1|349627|estExt_Genemark1.C_Ctg_460084Tribonema minus UTEX_B_3156 polypeptideContig_46 541409..542356 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4637 ID=mRNA_4637|Name=jgi.p|Trimin1|349627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=503bp|location=Sequence derived from alignment at Contig_46:541409..542571+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACCACTCTGGCGCTCATCAACAGCATGCTCCTCGCCAGTCGAAA
CAACGCACAACGGGCAGGGCTCAAATATCAAGACCTGCTGGTGGAGTACC
CCGCCGTGCTCCAGGCGCTGGAAAGCGCGGCGCCGGCAACGCTTGCGGCA
CGCAACCGGCGCATCGTGCGCGCGTCTGATGTCATCGTGAAGCAAAAGCC
GCTGCCGCAGTTCGGTCGTCACAGCGTGCGGCAGGCATTGGTGGCAGCAG
CGGCGGCGGCGGCGGCGGCAGCAGCAGGGCTCGCATAGCACGGCCGCCGG
CCAGACCATATTCGCACAAAAAACGCCATCGTGGTTGGTTCTGAGTACTG
AGATGGACTTGAGAAGGGTATGGTGTGTGATTCCACGTTGAAGAACATCA
AAGCGCGCGTGTTTGTAGGAGTGGTGGCAGCGGGGTGTGTGCTGCGACCA
TTCTGCACGTTGCGCGGCAGTTTCCATGAAAGCGCGCGGAGTGAGGATCC
AAG
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protein sequence of jgi.p|Trimin1|349627

>Trimin1|349627|estExt_Genemark1.C_Ctg_460084 ID=Trimin1|349627|estExt_Genemark1.C_Ctg_460084|Name=jgi.p|Trimin1|349627|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp
MTTTLALINSMLLASRNNAQRAGLKYQDLLVEYPAVLQALESAAPATLAA
RNRRIVRASDVIVKQKPLPQFGRHSVRQALVAAAAAAAAAAAGLA*
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mRNA from alignment at Contig_46:541409..542571+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4637 ID=mRNA_4637|Name=jgi.p|Trimin1|349627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1163bp|location=Sequence derived from alignment at Contig_46:541409..542571+ (Tribonema minus UTEX_B_3156 )
ATGACTACCACTCTGGCGCTCATCAACAGCATGCTCCTCGCCAGTCGAAA
CAACGCACAACGGGCAGGTACATACCGCATTGAGTAGTTCAAGTTGCAGT
TGCAGTTCAGATCTCAAATGTTGCAGTTTAGGAAGCTGCAACTAGCCATG
ACCATCCTGCGGCGAGCGCTGGACTCTGTTGCGGAACGCTATCAAACGCA
CCTTAGCAATGCACTCAAACAGTACGGTGAGTGCCTTGGGTTTTCGTTAC
CTCAGCGCTGTGTTGGCTTTTGCATTCGCCGAAAGCACGCATGCAGTTTT
TGTCAGCCCGTGTGTCGAAGCCTTGTAAGTCTACTTGTTGGAAGCTGCCA
TCGAAGTCGATACGAGTTATCCTCACGCGCTCAGGCAAGTGAGATGGGCC
TTTCAACCTCAAGAGCCACGCTCCTGCGCGTTTTGCTGAATTGGCGCTGC
CGATGCTCTCTGTGGTCCTTCGCATGATCTGCGCTCGACTCAATGTGAAG
CTCCTATTTATTACACATTCAAGAAGACCAGGGATTGCAGCAGCACCGAC
ACACTTATCAACTGTCCTCACACCTGAGGCACTATGCTCCAGTGCTTGAC
CTTGATGACCAAATGGTTGTTCTCCGGCACTGTTGCTAACAGGGCTCAAA
TATCAAGACCTGCTGGTGGAGTACCCCGCCGTGCTCCAGGCGCTGGAAAG
CGCGGCGCCGGCAACGCTTGCGGCACGCAACCGGCGCATCGTGCGCGCGT
CTGATGTCATCGTGAAGCAAAAGCCGCTGCCGCAGTTCGTGCAGGACATG
CAGGCGCCACTGGAGCCATACCTGGAGCTTCATCCAGGGCTGCTGTTGGA
GCCCTGCTTCAAAATTCGTGCAGGGTCGTCACAGCGTGCGGCAGGCATTG
GTGGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGGGCTCGCATAGCA
CGGCCGCCGGCCAGACCATATTCGCACAAAAAACGCCATCGTGGTTGGTT
CTGAGTACTGAGATGGACTTGAGAAGGGTATGGTGTGTGATTCCACGTTG
AAGAACATCAAAGCGCGCGTGTTTGTAGGAGTGGTGGCAGCGGGGTGTGT
GCTGCGACCATTCTGCACGTTGCGCGGCAGTTTCCATGAAAGCGCGCGGA
GTGAGGATCCAAG
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Coding sequence (CDS) from alignment at Contig_46:541409..542571+

>mRNA_4637 ID=mRNA_4637|Name=jgi.p|Trimin1|349627|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_46:541409..542571+ (Tribonema minus UTEX_B_3156 )
ATGACTACCACTCTGGCGCTCATCAACAGCATGCTCCTCGCCAGTCGAAA
CAACGCACAACGGGCAGGGCTCAAATATCAAGACCTGCTGGTGGAGTACC
CCGCCGTGCTCCAGGCGCTGGAAAGCGCGGCGCCGGCAACGCTTGCGGCA
CGCAACCGGCGCATCGTGCGCGCGTCTGATGTCATCGTGAAGCAAAAGCC
GCTGCCGCAGTTCGGTCGTCACAGCGTGCGGCAGGCATTGGTGGCAGCAG
CGGCGGCGGCGGCGGCGGCAGCAGCAGGGCTCGCATAG
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