mRNA_4575 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: A0A836CC84_9STRA (Hypothetical UPF0043 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC84_9STRA) HSP 1 Score: 733 bits (1891), Expect = 7.780e-265 Identity = 413/413 (100.00%), Postives = 413/413 (100.00%), Query Frame = 1 Query: 1 MAKIEDEHVKIWSSRRTMIRGALYTARAAAAVRGKFGGDGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAGVYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLARTQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAEASSSGGGDGDAAAAPLRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEEWERLQRNRSGXXXXXXXXXXXXXXXLTAAGGVDMGVYIAESWAFNGALFRALGEYSDPAKAPEPQ 1239 MAKIEDEHVKIWSSRRTMIRGALYTARAAAAVRGKFGGDGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAGVYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLARTQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAEASSSGGGDGDAAAAPLRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEEWERLQRNRSGXXXXXXXXXXXXXXXLTAAGGVDMGVYIAESWAFNGALFRALGEYSDPAKAPEPQ Sbjct: 1 MAKIEDEHVKIWSSRRTMIRGALYTARAAAAVRGKFGGDGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAGVYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLARTQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAEASSSGGGDGDAAAAPLRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEEWERLQRNRSGXXXXXXXXXXXXXXXLTAAGGVDMGVYIAESWAFNGALFRALGEYSDPAKAPEPQ 413
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: D7G0Q8_ECTSI (Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q8_ECTSI) HSP 1 Score: 330 bits (845), Expect = 7.070e-105 Identity = 199/430 (46.28%), Postives = 258/430 (60.00%), Query Frame = 1 Query: 22 HVKIWSSRRTMIRGALYTARAAAAVRGKFGG-DGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAGVYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLARTQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAEASSS--------------------GGGDGDAAAAPLRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEEWERLQ-RNRSGXXXXXXXXXXXXXXXLTAAGG---------VDMGVYIAESWAFNGALFRALGEYSDP 1218 H+++W SRR M R L A+A R G D + DS K +++++A A+A AAT+R+GGRAAL+S LGLDF D+GIK +++ L F G +Y F GW+ +KT C DFLS++LAL SG++FGGV++GA S CAT+AS +GFQLART LR +V EQ+EKRPALRA+E+ VS+ GFKTV+TLRLAP+LPIPLGAYNYVYG TSL L F +G +GS+KPYLLDSYLGVFGK +VDG D L+GTF V VL+GT AS++A RTW+EL+AEA S GGG GD L W ++ GI R LP W K +A I GVV++E E ++ R + L G D+G Y++ES F L + EYS+P Sbjct: 71 HIEVWDSRRDMTRATLSAAKALRGARESIAGEDVATDSLVEDGKGSLVISAIALAVAAATLRLGGRAALVSALGLDFGEDTGIKENVESFLAFFDGLGPVRYAYFLGGWVVAKTFCVDFLSIVLALGSGVVFGGVLQGALVSTACATIASGLGFQLARTTLRTQVEEQLEKRPALRALEKVVSEEGFKTVVTLRLAPVLPIPLGAYNYVYGTTSLPLPVFLSGMAVGSLKPYLLDSYLGVFGKQMVDGEAGVG--GDLALVGTFFVVVLVGTFASQVASRTWEELNAEAEKSMPTAAETNTPPGGVPSASQEGGGGGDG----LEWLDLWGIERSSLPDWFTTWKAKDNAVRSKIRGVVKQEREYMEGREAAEGEGVDGAELPPKESGLPPPGPPLLDESGRFFDLGAYVSESTVFPFVLIESFWEYSNP 494
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: A0A7S1T2A1_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T2A1_9CHLO) HSP 1 Score: 269 bits (687), Expect = 2.720e-82 Identity = 161/309 (52.10%), Postives = 200/309 (64.72%), Query Frame = 1 Query: 145 AKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAGVY-KYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLARTQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGV-TSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAE-------ASSSGGGDGDAAAAPLRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEE 1044 A AV TAFAVA GA +R+GGRAALLSV GLDF+ D+G++ +D + + G Y K +FA W +K C D L V+LA+ SG+LFGGV +G AS CAT+ S F L RT LR+RV +VEKR ALRAVERAVS GF+TVLTLRLAP+LPIPLG Y+YVYG TSL+L EF AGT + S+KPY LD+YLG+F KS+VDG NDAVLL TFAV VLIGTLAS++A RTW+E+ AE A G G W ++G DE P R W ++A +W +++ E Sbjct: 37 AVGAVATTAFAVAVGATVLRVGGRAALLSVAGLDFIRDTGLRDQVDQAVAYADGLGPYGKVAVFAGAWCVTKIACLDALGVVLAISSGVLFGGVWQGGLASATCATIGSAAAFGLGRTVLRERVAPEVEKRAALRAVERAVSTDGFRTVLTLRLAPVLPIPLGMYSYVYGASTSLALPEFLAGTLVASLKPYTLDAYLGIFAKSVVDGEPGD---NDAVLLATFAVVVLIGTLASQIATRTWEEVQAELALEEEQAKKDGKGVEAEDGGGFAWMGLLGQKADEDGP--RLW---LTSAWDRLWAILELE 337
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: A0A8J9SGT0_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SGT0_PHATR) HSP 1 Score: 242 bits (617), Expect = 1.590e-72 Identity = 148/307 (48.21%), Postives = 187/307 (60.91%), Query Frame = 1 Query: 1 MAKIEDEHVKIWSSRRTMIRGALYTARAAAAVR------GKFGGDGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAG-----VYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR--TQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAE 882 + K E +++W SRR IR L +A R + G DG P + K A+ LTAF +AAGA +RIGGRAAL+S LGLDF+ ++ L LD V N V K LLF A W A K LC D V LAL SGILFGGV++GA S AT S V F LA+ T LR + + +++ P+LR +E+ V+K GFK +LTLRLAPLLPIP+GAYNY+Y +T++ L +F G F+GS+KPYLLDSYLG FGKSLVDG D +LL +VLIG AS+LA TWD + E Sbjct: 69 LMKEESVRLQVWKSRRNQIRQTLKSADQVRIFRLQQGWVPELGDDGKPLKSDG--KVALTLTAFVIAAGAIALRIGGRAALVSTLGLDFVTENP---ELKANLDIVLNTADSMDPVTKLLLFTASWTAVKVLCFDAAGVALALSSGILFGGVLQGAVVSAAAATFGSTVAFGLAKLDTPLRKKGLGLLDEYPSLRGIEKVVAKEGFKAILTLRLAPLLPIPIGAYNYIYSITNVPLLDFCGGIFIGSLKPYLLDSYLGYFGKSLVDGTADQNGWQDTLLLAALGFSVLIGVFASQLASETWDSVLEE 370
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: A0A4D9CWB6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWB6_9STRA) HSP 1 Score: 244 bits (623), Expect = 2.010e-72 Identity = 141/315 (44.76%), Postives = 199/315 (63.17%), Query Frame = 1 Query: 148 KNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAG-VYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLARTQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLP-IPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLV-------DGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAEASSSGGGDGDAAAAPLRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEEWERLQRN 1065 KNAV+ TA VA A R+GGRAA++S++GLD +AD+G+ G L LD V+ G + L+F + W+ +K LC D L+++L L SGILFGGV EGA +S VCAT AS +GF LART LR++V+ Q+ KRP LRA+ERAV++ G K V T RL+PL+P +P+G YNY+YGV+S+S+ +F G F GS+KPY LD+YLGV+GK L+ +G +L GTF + VL+G LA ++AGR +DE EA ++ A W MMG+ R + +W G + V++EW++L + Sbjct: 16 KNAVVATALLVAVVTAVARLGGRAAVMSMMGLDILADAGVTGKLTSVLDMVEGMGEAERLLIFFSLWVVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLARTYLREQVLSQLNKRPLLRALERAVARDGLKAVFTFRLSPLVPALPIGGYNYLYGVSSVSIFDFLVGIFAGSLKPYFLDAYLGVWGKDLLSVNEAGGEGGGGVDIAQTVILSGTFFLLVLVGALAGQIAGRAFDEAKHEALTTVPLKEGETEAQWDWWTMMGVERPKGNVWTEEW--------GRLETAVEDEWKKLMED 322
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: B5Y532_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y532_PHATC) HSP 1 Score: 243 bits (619), Expect = 6.070e-71 Identity = 148/304 (48.68%), Postives = 190/304 (62.50%), Query Frame = 1 Query: 1 MAKIEDEHVKIWSSRRTMIRGALYTARAAAAVR------GKFGGDGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSG-IKGSLDGGLDFVQNAG-VYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR--TQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAE 882 + K E +++W SRR IR L +A R + G DG P + K A+ LTAF +AAGA +RIGGRAAL+S LGLDF+ ++ +K +LD L+ N V K LLF A W A K LC D V LAL SGILFGGV++GA S AT S V F LA+ T LR + + +++ P+LR +E+ V+K GFK +LTLRLAPLLPIP+GAYNY+Y +T++ L +F G F+GS+KPYLLDSYLG FGKSLVDG D +LL +VLIG AS+LA TWD + E Sbjct: 232 LMKEESVRLQVWKSRRNQIRQTLKSADQVRIFRLQQGWVPELGDDGKPLKSDG--KVALTLTAFVIAAGAIALRIGGRAALVSTLGLDFVTENPELKANLDIVLNTADNMDPVTKLLLFTASWTAVKVLCFDAAGVALALSSGILFGGVLQGAVVSAAAATFGSTVAFGLAKLDTPLRKKGLGLLDEYPSLRGIEKVVAKEGFKAILTLRLAPLLPIPIGAYNYIYSITNVPLLDFCGGIFIGSLKPYLLDSYLGYFGKSLVDGTADQNGWQDTLLLAALGFSVLIGVFASQLASETWDSVLEE 533
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: A0A7S1TUG8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUG8_9STRA) HSP 1 Score: 231 bits (590), Expect = 8.510e-69 Identity = 122/234 (52.14%), Postives = 160/234 (68.38%), Query Frame = 1 Query: 151 NAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSGIKGSLDGGLDFVQNAGVYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLARTQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELA 852 +A+ AF A A +R+GGRAALL++LGLD + D GIK +LD L + GV+K + F A W +K LC DFL V+LA +GILFGGV++GA AS CA + SV F + R+ L ++V ++++ P LRA+E AV+ G++ V TLRLAP+LP+P+GAY Y+YG+T L+L +F GTFLGSIKPYLLDSYLGVFGKSLVD D +L+GTFA V AS LA Sbjct: 113 SAIAAAAFVAAGSAVLLRVGGRAALLNMLGLDMLQDEGIKANLDQLLHTADDLGVFKIVFFTAAWTVAKVLCFDFLGVLLAFSAGILFGGVLQGAFASCACAAIGSVAAFGITRSLLAEKVRGRLDEAPGLRAIENAVADEGYRAVFTLRLAPILPLPVGAYAYIYGLTRLTLPDFMVGTFLGSIKPYLLDSYLGVFGKSLVDAPEAAGSMTDVLLVGTFAAVVXXXXXASRLA 346
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: A0A448ZP55_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP55_9STRA) HSP 1 Score: 236 bits (603), Expect = 3.380e-68 Identity = 145/302 (48.01%), Postives = 196/302 (64.90%), Query Frame = 1 Query: 7 KIEDEHVKIWSSRR----TMIRGA--LYTARAAAAVRGKFGGDGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSG-IKGSLDGGLDFVQNAG-VYKYLLFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR--TQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWDELSAE 882 +IE+ ++IW++RR +M++GA L R A + DG+P T A K AV LTAFAVAAGA +R+GGRAAL+S +GLDF+ D+ ++ ++ L + ++ V K LF GW KTLC D ++LA SGILFGGV++GA S + AT+ S V F LA+ T +R++ IE VE+ P+LR +E+ V+ G K VLT RLAP+LPIPLG YNYVYG+T++ +F G FLGS+KPY LDSYLG GKSLVDG D VL+G ++VLIG AS+LA TW+ + E Sbjct: 52 QIEEARLRIWNNRRGEVRSMLKGAESLRNFRLANGFTPELDEDGNP--TKADGKTAVTLTAFAVAAGAIVLRVGGRAALVSAVGLDFVNDNPEMQEQINQVLQYAESVDPVLKTGLFWLGWTFVKTLCFDAGGIVLAFASGILFGGVLQGAIMSALGATIGSSVAFALAKADTPVREKAIEIVEENPSLRGLEKVVADEGLKAVLTFRLAPVLPIPLGMYNYVYGITNVRFVDFAGGIFLGSLKPYFLDSYLGYVGKSLVDGSASEGGLQDYVLIGVLGLSVLIGVFASQLASETWEAIQKE 351
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: K0R0H6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0H6_THAOC) HSP 1 Score: 234 bits (597), Expect = 2.330e-67 Identity = 165/427 (38.64%), Postives = 230/427 (53.86%), Query Frame = 1 Query: 10 IEDEHVKIWSSRRTMIRGALYTARAAAAVRGKFGGDGSPD---STG----AAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSG-IKGSLDGGLDFVQNAGVYKYL-LFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR--TQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXXNDAVLLGTFAVAVLIGTLASELAGRTWD----ELSAEASSSGGGDGDAAAAPLRWNEMMGIARDELPPPVRQWDDKTSAAEGLIWGVVQEEWE---------RLQRNRSGXXXXXXXXXXXXXXXLTAAGGVDMGVYIAESWAFNGALFRALGEYSDP 1218 +E+ +K++S RR IR L A + R D P+ TG + K+AV +TAF VA GA +R+GGRAAL+S LGLDF +++ +K L+ L + G L LF W K C D V+LAL SGILFGGV++GA S AT+ S F LA+ T +R + ++ VE+ P+LR +E+ V+K G K +LTLRLAP+LPIP+G YNYVYGVT++ +F G FLGS+KPYLLDSYLGVFGK +VDG D +LL V+VLIG AS+LA TWD E+ A+ + + D + E MG+ LP + ++ AA+ + +++EE E L+ N L A G ++G I + AL +A +Y+DP Sbjct: 75 VEEARLKVFSDRRRTIRWVLKNAESTKNYR--IANDLVPELDPETGKPIKSDGKSAVTITAFVVAGGAVLLRLGGRAALVSALGLDFASENPELKDGLESVLGYANTMGTESELFLFILAWTVVKVFCFDAGGVVLALASGILFGGVIQGAVVSAFAATVGSSAAFGLAKIDTPVRKKALDLVEEYPSLRGIEKVVAKDGLKAILTLRLAPVLPIPIGLYNYVYGVTNVPYLQFAGGIFLGSLKPYLLDSYLGVFGKQIVDGTTQDGGLQDFLLLVALGVSVLIGVFASQLAEETWDSINEEVEAKKAEISESEDDEEGGVM--TEFMGVG---LPQFIVKFQQALQAADERVNKLIEEEMEAKVWNCTMAELEENPKNPAKQPDSIEV-----LEANQGFNIGADICNGLCLSPALLKAYLKYADP 489
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Match: B8CC46_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC46_THAPS) HSP 1 Score: 233 bits (593), Expect = 2.450e-67 Identity = 163/425 (38.35%), Postives = 227/425 (53.41%), Query Frame = 1 Query: 13 EDEHVKIWSSRRTMIRGALYTARAAAAVRGKFG-------GDGSPDSTGAAAKNAVLLTAFAVAAGAATIRIGGRAALLSVLGLDFMADSG-IKGSLDGGLDFVQNAGVYKYL-LFAAGWLASKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR--TQLRDRVIEQVEKRPALRAVERAVSKGGFKTVLTLRLAPLLPIPLGAYNYVYGVTSLSLGEFTAGTFLGSIKPYLLDSYLGVFGKSLVDGXXXXXXX-NDAVLLGTFAVAVLIGTLASELAGRTWDELSAEASSSGGGDGDAAAAPLRWNEMMGIARDELPPPVRQW----DDKTSAAEGLIWGVVQEEWERLQRNRSGXXXXXXXXXXXXXXX-------LTAAGGVDMGVYIAESWAFNGALFRALGEYSDP 1218 E+ +K+ + RR IRG L A ++ R + G G P S+ + K+AV +TAF VAAGA +RIGGRAAL+S LGLDF ++ ++ L+ L + G L LF W A K C D V+LAL SGILFGGV +GA S AT+ S + F +A+ T +R + +E V++ P+LR +E+ V+K G K +LTLRLAP+LPIPLG YNYVYGVT++ +F G FLGS+KPYLLDSYLGVFGK +VDG DA+LL V+VLIG AS+LA TW+ ++ E A ++ GI R+ + V +W AA+ + ++++E+ N + + A G D G I + + AL A Y+DP Sbjct: 14 EESRMKVLTDRRKSIRGILKAAESSKNFRLQNGYVPELDPDTGKPISSDS--KSAVAITAFVVAAGAVALRIGGRAALVSALGLDFATENPELREGLNSVLQYADTVGTETELALFILAWTAVKVFCFDAGGVVLALASGILFGGVWQGAVVSAFAATVGSSIAFGMAKLDTPVRKKALEVVDEYPSLRGIEKVVAKDGLKAILTLRLAPVLPIPLGIYNYVYGVTNVPYLDFAGGIFLGSLKPYLLDSYLGVFGKQIVDGTAGEVGSLQDALLLVALGVSVLIGVFASQLANETWESINEEVEREKAEKAAAEGEGGEIDDYDGITREFMGMDVPKWIIGFQLALQAADKRVNTMIEDEYHAKVWNYTAEELESPSSTVINPATQPDSPEVVNANTGFDFGASICDGLVLSPALLGAYLRYADP 436 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349606 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4575 ID=mRNA_4575|Name=jgi.p|Trimin1|349606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_46:179846..181750- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCCAAAATAGAGGATGAGCACGTCAAGATCTGGAGCAGCCGTCGCACback to top protein sequence of jgi.p|Trimin1|349606 >Trimin1|349606|estExt_Genemark1.C_Ctg_460033 ID=Trimin1|349606|estExt_Genemark1.C_Ctg_460033|Name=jgi.p|Trimin1|349606|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=414bp MAKIEDEHVKIWSSRRTMIRGALYTARAAAAVRGKFGGDGSPDSTGAAAKback to top mRNA from alignment at Contig_46:179846..181750- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4575 ID=mRNA_4575|Name=jgi.p|Trimin1|349606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1905bp|location=Sequence derived from alignment at Contig_46:179846..181750- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_46:179846..181750- >mRNA_4575 ID=mRNA_4575|Name=jgi.p|Trimin1|349606|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1242bp|location=Sequence derived from alignment at Contig_46:179846..181750- (Tribonema minus UTEX_B_3156 )back to top |