mRNA_4564 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|128735
Unique Name	mRNA_4564
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YRH7_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.380e-60
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1

Query:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 288
            NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD
Sbjct:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 96

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BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YS91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS91_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1

Query:    1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 282
            N ++ ALARADRA DAWH C+E +++GF+P   TV  ++ A   QRQ  M  R L +VRG+G +L+V  Y + ++AC  + S+E  + LY QM+
Sbjct:   74 NFHIDALARADRAMDAWHTCQENMQSGFRPGARTVQQVVCALARQRQYRMVPRFLELVRGTGFKLDVKGYNVVLKACTMAESLEITLNLYHQMV 167

[Close]

BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YUD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.990e-18
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1

Query:    4 LYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 282
             ++ ALARA+RA DAWH C EY++AGF+P   TV  ++ A   +R   M LR L  +RG+G +L+V  Y I ++AC+ + S+E A+ LY QM+
Sbjct:   16 FHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMV 108

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|128735 vs. uniprot

BLAST of jgi.p|Trimin1|128735 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A835YRH7_9STRA	1.380e-60	100.00	PPR_long domain-containing protein (Fragment) n=1 ...	[more]
A0A835YS91_9STRA	1.110e-18	44.68	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YUD4_9STRA	3.990e-18	45.16	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_46	contig	Contig_46:120897..121316 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|128735\|gw1.46.1.1
Hectar predicted targeting category	other localisation
TranscriptId	129057
Track	FilteredModels1
ProteinId	128735

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|128735	gene_4564	Tribonema minus UTEX_B_3156	gene	Contig_46 120897..121316 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4564_1	exon_4564_1	Tribonema minus UTEX_B_3156	exon	Contig_46 120897..121316 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4564	CDS_4564	Tribonema minus UTEX_B_3156	CDS	Contig_46 120897..121316 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|128735	Trimin1\|128735\|gw1.46.1.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_46 120897..121316 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_46:120897..121316-
coding sequence from alignment at Contig_46:120897..121316-

spliced messenger RNA

>mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACCTCTACGTCAGCGCGCTGGCACGCGCTGATCGAGCGCAGGACGCTTG
GCACGCCTGTCGTGAGTACATCAAAGCCGGATTTCAGCCGCATGAACATA
CTGTGCACTATATTATCTTTGCGTTTACTACGCAGCGGCAGGGGTCAATG
GCGCTGCGCGTTCTGTCTGTTGTCAGAGGCAGCGGTGTGCAACTGAACGT
CTACATCTACTGCATTGCCATGAGGGCGTGTGCTTCTTCAGGCTCAATGG
AGTCCGCCATGGCGCTGTACCGCCAGATGATCCAGGATGGTGTCGAGCCC
AACATCAGGATCTACGATTGCCTGCTGAGAGGTTGTCGTCACTGTGCGGA
CTGGCGCACGGCGCTGACCATGGTTACTGAGATGGAGCAGCGAGGCTTGA
AACCGGACGCACTGGCTTGG

protein sequence of jgi.p|Trimin1|128735

>Trimin1|128735|gw1.46.1.1 ID=Trimin1|128735|gw1.46.1.1|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSM
ALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQDGVEP
NIRIYDCLLRGCRHCADWRTALTMVTEMEQRGLKPDALAW

mRNA from alignment at Contig_46:120897..121316-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )
AACCTCTACGTCAGCGCGCTGGCACGCGCTGATCGAGCGCAGGACGCTTG
GCACGCCTGTCGTGAGTACATCAAAGCCGGATTTCAGCCGCATGAACATA
CTGTGCACTATATTATCTTTGCGTTTACTACGCAGCGGCAGGGGTCAATG
GCGCTGCGCGTTCTGTCTGTTGTCAGAGGCAGCGGTGTGCAACTGAACGT
CTACATCTACTGCATTGCCATGAGGGCGTGTGCTTCTTCAGGCTCAATGG
AGTCCGCCATGGCGCTGTACCGCCAGATGATCCAGGATGGTGTCGAGCCC
AACATCAGGATCTACGATTGCCTGCTGAGAGGTTGTCGTCACTGTGCGGA
CTGGCGCACGGCGCTGACCATGGTTACTGAGATGGAGCAGCGAGGCTTGA
AACCGGACGCACTGGCTTGG

Coding sequence (CDS) from alignment at Contig_46:120897..121316-

>mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )
AACCTCTACGTCAGCGCGCTGGCACGCGCTGATCGAGCGCAGGACGCTTG
GCACGCCTGTCGTGAGTACATCAAAGCCGGATTTCAGCCGCATGAACATA
CTGTGCACTATATTATCTTTGCGTTTACTACGCAGCGGCAGGGGTCAATG
GCGCTGCGCGTTCTGTCTGTTGTCAGAGGCAGCGGTGTGCAACTGAACGT
CTACATCTACTGCATTGCCATGAGGGCGTGTGCTTCTTCAGGCTCAATGG
AGTCCGCCATGGCGCTGTACCGCCAGATGATCCAGGATGGTGTCGAGCCC
AACATCAGGATCTACGATTGCCTGCTGAGAGGTTGTCGTCACTGTGCGGA
CTGGCGCACGGCGCTGACCATGGTTACTGAGATGGAGCAGCGAGGCTTGA
AACCGGACGCACTGGCTTGG