mRNA_4564 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YRH7_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH7_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.380e-60 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 Query: 1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 288
NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD
Sbjct: 1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMIQD 96
BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YS91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS91_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.110e-18 Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1 Query: 1 NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 282
N ++ ALARADRA DAWH C+E +++GF+P TV ++ A QRQ M R L +VRG+G +L+V Y + ++AC + S+E + LY QM+
Sbjct: 74 NFHIDALARADRAMDAWHTCQENMQSGFRPGARTVQQVVCALARQRQYRMVPRFLELVRGTGFKLDVKGYNVVLKACTMAESLEITLNLYHQMV 167
BLAST of jgi.p|Trimin1|128735 vs. uniprot
Match: A0A835YUD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD4_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.990e-18 Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 4 LYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMALRVLSVVRGSGVQLNVYIYCIAMRACASSGSMESAMALYRQMI 282
++ ALARA+RA DAWH C EY++AGF+P TV ++ A +R M LR L +RG+G +L+V Y I ++AC+ + S+E A+ LY QM+
Sbjct: 16 FHIGALARANRATDAWHTCHEYMQAGFRPGARTVQQVVCALARKRHDRMVLRFLKTLRGTGFKLDVKGYNIVLKACSMADSLEIAVELYHQMV 108 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|128735 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AACCTCTACGTCAGCGCGCTGGCACGCGCTGATCGAGCGCAGGACGCTTGback to top protein sequence of jgi.p|Trimin1|128735 >Trimin1|128735|gw1.46.1.1 ID=Trimin1|128735|gw1.46.1.1|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp NLYVSALARADRAQDAWHACREYIKAGFQPHEHTVHYIIFAFTTQRQGSMback to top mRNA from alignment at Contig_46:120897..121316- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_46:120897..121316- >mRNA_4564 ID=mRNA_4564|Name=jgi.p|Trimin1|128735|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_46:120897..121316- (Tribonema minus UTEX_B_3156 )back to top |