mRNA_4557 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143512
Unique NamemRNA_4557
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|143512 vs. uniprot
Match: A0A836CC28_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC28_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.060e-30
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 
Query:    1 CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQHVDEGGNSCNACAKISNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTMDTSLAKHPKXXXXXXXXXXXXXXXXXXXXTDEGGNSCRSSAVASK 564
            CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQHVDEGGNSCNACAKISNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTMDTSLAKHPKXXXXXXXXXXXXXXXXXXXXTDEGGNSCRSSAVASK
Sbjct:    1 CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQHVDEGGNSCNACAKISNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLTMDTSLAKHPKXXXXXXXXXXXXXXXXXXXXTDEGGNSCRSSAVASK 188
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BLAST of jgi.p|Trimin1|143512 vs. uniprot
Match: A0A836CIX9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.040e-18
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQHVDEGGNSCNA 123
            CEVNGCTKQAV RSGSTEFCVMH GGDRCQHVDEGGNSCNA
Sbjct:    1 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQHVDEGGNSCNA 41
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BLAST of jgi.p|Trimin1|143512 vs. uniprot
Match: A0A836CDE9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.110e-10
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQH 93
            CEVNGCTKQAV RSGSTEFCVMH GGDRCQH
Sbjct:    7 CEVNGCTKQAVLRSGSTEFCVMHGGGDRCQH 37
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143512 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CC28_9STRA2.060e-30100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CIX9_9STRA4.040e-1895.12Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CDE9_9STRA2.110e-1093.55Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_46contigContig_46:83226..84085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143512|gw1.46.92.1
Hectar predicted targeting categoryother localisation
TranscriptId143834
TrackFilteredModels1
ProteinId143512
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143512gene_4557Tribonema minus UTEX_B_3156 geneContig_46 83226..84085 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4557_1exon_4557_1Tribonema minus UTEX_B_3156 exonContig_46 83226..83677 +
exon_4557_2exon_4557_2Tribonema minus UTEX_B_3156 exonContig_46 83689..84085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4557CDS_4557Tribonema minus UTEX_B_3156 CDSContig_46 83226..83677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143512Trimin1|143512|gw1.46.92.1Tribonema minus UTEX_B_3156 polypeptideContig_46 83226..84085 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4557 ID=mRNA_4557|Name=jgi.p|Trimin1|143512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=849bp|location=Sequence derived from alignment at Contig_46:83226..84085+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGAAGTCAACGGATGCACCAAGCAGGCCGTGCGTCGCAGCGGCAGCAC
TGAGTTCTGTGTCATGCACGAGGGCGGCGATCGCTGCCAGCACGTCGACG
AAGGAGGCAACTCTTGCAATGCATGTGCTAAAATCAGTAACAGCGGAAAC
GGTGTGGTTCATATGTGCATCAAGCATGGCGGTGGCAACCGCTGCCAGCA
TGTAGACGAAGAAGGTAATTCTTGCAGGGCATCTGCTTTAACCAGCAGGA
CCGGATCCGGTGCCGTTGGTATGTGCATCAAGCATGGCGGTGGTGATCGC
TGCCAGCACGTCGACGAAGGAGGCAATTCTTGCAGGGCATCTGCTGTGAC
CAGCAAGAGCGAATCTGGTGCCGTTGGTATGTGCTTCAAGCATGGCGGCG
GCGATCGCTGCCAGCACACATTGACAATGGACACATCTCTTGCAAAGCAT
CCCAAGAGTGGATCCGGTACCGCTGGTATGTGCATCAAGCATGGTGGCGG
CGATCGCTGCCACCATACTGACGAAGGAGGCAACTCTTGCAGGTCATCTG
CTGTTGCCAGTAAGATGGGATCCGGCGCAATCGGCATGTGTGTGAAGCAC
GGCGGTGGCAACCGCTGCCAGCATGTTGATGAAGAAGACAACTCTTGCAG
AGCGTCTGCTGTAACCAGCAAGAGCGGATCCGGCTTGGTCGGTATGAGCA
GAAAGCACGGTGGCGGCGATCGTTGCCAGCACGTCGACGAAGATGGCATT
TATTGTGGGACATCTGCTGAACACAGCAAGACGGGTACTGGTGTCACTGG
CATGTGCAGGACGCACGGTGGTGGCAATCGCTGCCAGATCCACGGATGC
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protein sequence of jgi.p|Trimin1|143512

>Trimin1|143512|gw1.46.92.1 ID=Trimin1|143512|gw1.46.92.1|Name=jgi.p|Trimin1|143512|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=283bp
CEVNGCTKQAVRRSGSTEFCVMHEGGDRCQHVDEGGNSCNACAKISNSGN
GVVHMCIKHGGGNRCQHVDEEGNSCRASALTSRTGSGAVGMCIKHGGGDR
CQHVDEGGNSCRASAVTSKSESGAVGMCFKHGGGDRCQHTLTMDTSLAKH
PKSGSGTAGMCIKHGGGDRCHHTDEGGNSCRSSAVASKMGSGAIGMCVKH
GGGNRCQHVDEEDNSCRASAVTSKSGSGLVGMSRKHGGGDRCQHVDEDGI
YCGTSAEHSKTGTGVTGMCRTHGGGNRCQIHGC
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mRNA from alignment at Contig_46:83226..84085+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4557 ID=mRNA_4557|Name=jgi.p|Trimin1|143512|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=860bp|location=Sequence derived from alignment at Contig_46:83226..84085+ (Tribonema minus UTEX_B_3156 )
TGCGAAGTCAACGGATGCACCAAGCAGGCCGTGCGTCGCAGCGGCAGCAC
TGAGTTCTGTGTCATGCACGAGGGCGGCGATCGCTGCCAGCACGTCGACG
AAGGAGGCAACTCTTGCAATGCATGTGCTAAAATCAGTAACAGCGGAAAC
GGTGTGGTTCATATGTGCATCAAGCATGGCGGTGGCAACCGCTGCCAGCA
TGTAGACGAAGAAGGTAATTCTTGCAGGGCATCTGCTTTAACCAGCAGGA
CCGGATCCGGTGCCGTTGGTATGTGCATCAAGCATGGCGGTGGTGATCGC
TGCCAGCACGTCGACGAAGGAGGCAATTCTTGCAGGGCATCTGCTGTGAC
CAGCAAGAGCGAATCTGGTGCCGTTGGTATGTGCTTCAAGCATGGCGGCG
GCGATCGCTGCCAGCACACATTGACAATGGACACATCTCTTGCAAAGCAT
CCGTGCAGAGTAGCAAGAGTGGATCCGGTACCGCTGGTATGTGCATCAAG
CATGGTGGCGGCGATCGCTGCCACCATACTGACGAAGGAGGCAACTCTTG
CAGGTCATCTGCTGTTGCCAGTAAGATGGGATCCGGCGCAATCGGCATGT
GTGTGAAGCACGGCGGTGGCAACCGCTGCCAGCATGTTGATGAAGAAGAC
AACTCTTGCAGAGCGTCTGCTGTAACCAGCAAGAGCGGATCCGGCTTGGT
CGGTATGAGCAGAAAGCACGGTGGCGGCGATCGTTGCCAGCACGTCGACG
AAGATGGCATTTATTGTGGGACATCTGCTGAACACAGCAAGACGGGTACT
GGTGTCACTGGCATGTGCAGGACGCACGGTGGTGGCAATCGCTGCCAGAT
CCACGGATGC
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Coding sequence (CDS) from alignment at Contig_46:83226..84085+

>mRNA_4557 ID=mRNA_4557|Name=jgi.p|Trimin1|143512|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=849bp|location=Sequence derived from alignment at Contig_46:83226..84085+ (Tribonema minus UTEX_B_3156 )
TGCGAAGTCAACGGATGCACCAAGCAGGCCGTGCGTCGCAGCGGCAGCAC
TGAGTTCTGTGTCATGCACGAGGGCGGCGATCGCTGCCAGCACGTCGACG
AAGGAGGCAACTCTTGCAATGCATGTGCTAAAATCAGTAACAGCGGAAAC
GGTGTGGTTCATATGTGCATCAAGCATGGCGGTGGCAACCGCTGCCAGCA
TGTAGACGAAGAAGGTAATTCTTGCAGGGCATCTGCTTTAACCAGCAGGA
CCGGATCCGGTGCCGTTGGTATGTGCATCAAGCATGGCGGTGGTGATCGC
TGCCAGCACGTCGACGAAGGAGGCAATTCTTGCAGGGCATCTGCTGTGAC
CAGCAAGAGCGAATCTGGTGCCGTTGGTATGTGCTTCAAGCATGGCGGCG
GCGATCGCTGCCAGCACACATTGACAATGGACACATCTCTTGCAAAGCAT
CCCAAGAGTGGATCCGGTACCGCTGGTATGTGCATCAAGCATGGTGGCGG
CGATCGCTGCCACCATACTGACGAAGGAGGCAACTCTTGCAGGTCATCTG
CTGTTGCCAGTAAGATGGGATCCGGCGCAATCGGCATGTGTGTGAAGCAC
GGCGGTGGCAACCGCTGCCAGCATGTTGATGAAGAAGACAACTCTTGCAG
AGCGTCTGCTGTAACCAGCAAGAGCGGATCCGGCTTGGTCGGTATGAGCA
GAAAGCACGGTGGCGGCGATCGTTGCCAGCACGTCGACGAAGATGGCATT
TATTGTGGGACATCTGCTGAACACAGCAAGACGGGTACTGGTGTCACTGG
CATGTGCAGGACGCACGGTGGTGGCAATCGCTGCCAGATCCACGGATGC
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