mRNA_4370 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347337
Unique NamemRNA_4370
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|347337 vs. uniprot
Match: A0A835ZFI5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI5_9STRA)

HSP 1 Score: 392 bits (1007), Expect = 8.960e-136
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1 
Query:    1 MERIVGRLNSANRTSTKAAVAVACAGAGAVLSLMGYRLSRAQARRAAAVEERLALVSLVDTLRAENDILAQQRRALERAIADARAAAAAAEFTHAAERAELLSNAAALEATRAALRDTIEKLSAELATMQGRQAQLLQQIAALQQRPAKGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPEPPMSPNSRHRLSQQLITDELEILAANPAPPAGRKASGGGFDQQQLERLKASTAAQREAASVAGMGGGSHRGSRGG 792
            MERIVGRLNSANRTSTKAAVAVACAGAGAVLSLMGYRLSRAQARRAAAVEERLALVSLVDTLRAENDILAQQRRALERAIADARAAAAAAEFTHAAERAELLSNAAALEATRAALRDTIEKLSAELATMQGRQAQLLQQIAALQQRPAKGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPEPPMSPNSRHRLSQQLITDELEILAANPAPPAGRKASGGGFDQQQLERLKASTAAQREAASVAGMGGGSHRGSRGG
Sbjct:    1 MERIVGRLNSANRTSTKAAVAVACAGAGAVLSLMGYRLSRAQARRAAAVEERLALVSLVDTLRAENDILAQQRRALERAIADARAAAAAAEFTHAAERAELLSNAAALEATRAALRDTIEKLSAELATMQGRQAQLLQQIAALQQRPAKGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPEPPMSPNSRHRLSQQLITDELEILAANPAPPAGRKASGGGFDQQQLERLKASTAAQREAASVAGMGGGSHRGSRGG 264
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BLAST of jgi.p|Trimin1|347337 vs. uniprot
Match: A0A835YP80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP80_9STRA)

HSP 1 Score: 920 bits (2379), Expect = 0.000e+0
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 1 
Query:    1 MVGSQLQFRTGQPAATKRSDGSIEEPDSSPQIFAFAETAKAIIKLAPAAWLRGDAQQRRRIAQQLVGVSCERRCPRDVARAALDAVVKVVRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAVAAVLRLYRSRVAWQWEFQQFDRDESRASPDLLGMGRAIEHFTDTLFTGTHGELLAQFLYLNIADERLSVAATLSAETTQRLVEARRDYAHVAAXXXXXXXXXXXXXXVRQYGYGALARCAVLGRGALGTRPLAKLLRTRLDAAXXXXXXXXXGRRAAAGEPDPALRARLCALAWGALAAGAQLRRAALTSALAASAPAGYCMTQVRGGAAPRRRRRSAVCGVRAVXXXXXXXXXXXKQDLVARDVVTRVVAALGARDVLEAVLEEASARAPPASGGGGQPWADPAAATLLCALAGALRRARRCRRTAAALETALCVVADCSNAQAREAVAAAAVAHRLGCALDSGDLEALKDAFPEGGAGLQAAELIFDQATRDCRWELALLAGLAHGAVGSRSGGNDGGSGAAASAVHAAAQCVLEQYASCAWQGAAPIAAERAVAWLLRRSHV 1722
            MVGSQLQFRTGQPAATKRSDGSIEEPDSSPQIFAFAETAKAIIKLAPAAWLRGDAQQRRRIAQQLVGVSCERRCPRDVARAALDAVVKVVRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAVAAVLRLYRSRVAWQWEFQQFDRDESRASPDLLGMGRAIEHFTDTLFTGTHGELLAQFLYLNIADERLSVAATLSAETTQRLVEARRDYAHVAAXXXXXXXXXXXXXXVRQYGYGALARCAVLGRGALGTRPLAKLLRTRLDAAXXXXXXXXXGRRAAAGEPDPALRARLCALAWGALAAGAQLRRAALTSALAASAPAGYCMTQVRGGAAPRRRRRSAVCGVRAVXXXXXXXXXXXKQDLVARDVVTRVVAALGARDVLEAVLEEASARAPPASGGGGQPWADPAAATLLCALAGALRRARRCRRTAAALETALCVVADCSNAQAREAVAAAAVAHRLGCALDSGDLEALKDAFPEGGAGLQAAELIFDQATRDCRWELALLAGLAHGAVGSRSGGNDGGSGAAASAVHAAAQCVLEQYASCAWQGAAPIAAERAVAWLLRRSHV
Sbjct:    1 MVGSQLQFRTGQPAATKRSDGSIEEPDSSPQIFAFAETAKAIIKLAPAAWLRGDAQQRRRIAQQLVGVSCERRCPRDVARAALDAVVKVVRAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAVAAVLRLYRSRVAWQWEFQQFDRDESRASPDLLGMGRAIEHFTDTLFTGTHGELLAQFLYLNIADERLSVAATLSAETTQRLVEARRDYAHVAAXXXXXXXXXXXXXXVRQYGYGALARCAVLGRGALGTRPLAKLLRTRLDAAXXXXXXXXXGRRAAAGEPDPALRARLCALAWGALAAGAQLRRAALTSALAASAPAGYCMTQVRGGAAPRRRRRSAVCGVRAVXXXXXXXXXXXKQDLVARDVVTRVVAALGARDVLEAVLEEASARAPPASGGGGQPWADPAAATLLCALAGALRRARRCRRTAAALETALCVVADCSNAQAREAVAAAAVAHRLGCALDSGDLEALKDAFPEGGAGLQAAELIFDQATRDCRWELALLAGLAHGAVGSRSGGNDGGSGAAASAVHAAAQCVLEQYASCAWQGAAPIAAERAVAWLLRRSHV 574
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347337 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZFI5_9STRA8.960e-136100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|347337 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YP80_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:1454301..1455095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347337|estExt_Genemark1.C_Ctg_100173
Hectar predicted targeting categoryother localisation
TranscriptId347659
TrackFilteredModels1
ProteinId347337
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347337gene_4370Tribonema minus UTEX_B_3156 geneContig_10 1454301..1455095 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4370_1exon_4370_1Tribonema minus UTEX_B_3156 exonContig_10 1454301..1455095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4370CDS_4370Tribonema minus UTEX_B_3156 CDSContig_10 1454301..1455095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347337Trimin1|347337|estExt_Genemark1.C_Ctg_100173Tribonema minus UTEX_B_3156 polypeptideContig_10 1454301..1455095 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4370 ID=mRNA_4370|Name=jgi.p|Trimin1|347337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_10:1454301..1455095+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCATCGTCGGAAGGCTGAACAGCGCCAACAGGACAAGCACCAA
GGCAGCAGTCGCGGTCGCATGCGCAGGCGCAGGCGCCGTCCTCTCGCTGA
TGGGCTACAGGCTCTCAAGAGCCCAGGCCCGGCGCGCCGCAGCAGTCGAA
GAGCGCCTCGCCCTGGTGTCCCTCGTGGACACGCTGCGCGCCGAGAACGA
CATACTGGCGCAGCAGAGGCGCGCGCTGGAGAGGGCCATTGCAGACGCGC
GCGCCGCCGCCGCCGCCGCGGAGTTTACGCACGCCGCGGAGAGGGCGGAG
CTGCTGAGCAATGCTGCGGCGCTGGAGGCGACGAGGGCAGCGCTCAGGGA
CACAATCGAGAAGCTGAGCGCTGAGCTGGCGACCATGCAGGGGCGCCAGG
CGCAGCTGCTGCAGCAGATCGCGGCGCTGCAGCAGCGGCCCGCCAAGGGT
GACGCTGCTGCAGCGGCGGCGGCAGCAGCGGAGGCGGCAGCGGTGGCAGA
GGCGGCAGCAGCAGCGGAGGCGGCGGCGGCAGCAGAGGCGGCGGCGGCGG
CAGCGGCGCAGCCGGAGCCTCCCATGAGCCCCAACTCGCGGCACAGGCTG
TCGCAGCAGCTGATTACGGATGAGCTGGAGATTCTTGCGGCGAATCCAGC
GCCGCCGGCTGGGCGCAAGGCGTCGGGCGGCGGTTTCGACCAGCAGCAGC
TGGAGCGCCTCAAGGCGAGCACCGCCGCGCAGCGCGAGGCGGCGAGCGTG
GCGGGGATGGGGGGGGGCTCGCACAGGGGGTCGAGGGGGGGGTAA
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protein sequence of jgi.p|Trimin1|347337

>Trimin1|347337|estExt_Genemark1.C_Ctg_100173 ID=Trimin1|347337|estExt_Genemark1.C_Ctg_100173|Name=jgi.p|Trimin1|347337|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
MERIVGRLNSANRTSTKAAVAVACAGAGAVLSLMGYRLSRAQARRAAAVE
ERLALVSLVDTLRAENDILAQQRRALERAIADARAAAAAAEFTHAAERAE
LLSNAAALEATRAALRDTIEKLSAELATMQGRQAQLLQQIAALQQRPAKG
DAAAAAAAAAEAAAVAEAAAAAEAAAAAEAAAAAAAQPEPPMSPNSRHRL
SQQLITDELEILAANPAPPAGRKASGGGFDQQQLERLKASTAAQREAASV
AGMGGGSHRGSRGG*
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mRNA from alignment at Contig_10:1454301..1455095+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4370 ID=mRNA_4370|Name=jgi.p|Trimin1|347337|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_10:1454301..1455095+ (Tribonema minus UTEX_B_3156 )
ATGGAGCGCATCGTCGGAAGGCTGAACAGCGCCAACAGGACAAGCACCAA
GGCAGCAGTCGCGGTCGCATGCGCAGGCGCAGGCGCCGTCCTCTCGCTGA
TGGGCTACAGGCTCTCAAGAGCCCAGGCCCGGCGCGCCGCAGCAGTCGAA
GAGCGCCTCGCCCTGGTGTCCCTCGTGGACACGCTGCGCGCCGAGAACGA
CATACTGGCGCAGCAGAGGCGCGCGCTGGAGAGGGCCATTGCAGACGCGC
GCGCCGCCGCCGCCGCCGCGGAGTTTACGCACGCCGCGGAGAGGGCGGAG
CTGCTGAGCAATGCTGCGGCGCTGGAGGCGACGAGGGCAGCGCTCAGGGA
CACAATCGAGAAGCTGAGCGCTGAGCTGGCGACCATGCAGGGGCGCCAGG
CGCAGCTGCTGCAGCAGATCGCGGCGCTGCAGCAGCGGCCCGCCAAGGGT
GACGCTGCTGCAGCGGCGGCGGCAGCAGCGGAGGCGGCAGCGGTGGCAGA
GGCGGCAGCAGCAGCGGAGGCGGCGGCGGCAGCAGAGGCGGCGGCGGCGG
CAGCGGCGCAGCCGGAGCCTCCCATGAGCCCCAACTCGCGGCACAGGCTG
TCGCAGCAGCTGATTACGGATGAGCTGGAGATTCTTGCGGCGAATCCAGC
GCCGCCGGCTGGGCGCAAGGCGTCGGGCGGCGGTTTCGACCAGCAGCAGC
TGGAGCGCCTCAAGGCGAGCACCGCCGCGCAGCGCGAGGCGGCGAGCGTG
GCGGGGATGGGGGGGGGCTCGCACAGGGGGTCGAGGGGGGGGTAA
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Coding sequence (CDS) from alignment at Contig_10:1454301..1455095+

>mRNA_4370 ID=mRNA_4370|Name=jgi.p|Trimin1|347337|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=795bp|location=Sequence derived from alignment at Contig_10:1454301..1455095+ (Tribonema minus UTEX_B_3156 )
ATGGAGCGCATCGTCGGAAGGCTGAACAGCGCCAACAGGACAAGCACCAA
GGCAGCAGTCGCGGTCGCATGCGCAGGCGCAGGCGCCGTCCTCTCGCTGA
TGGGCTACAGGCTCTCAAGAGCCCAGGCCCGGCGCGCCGCAGCAGTCGAA
GAGCGCCTCGCCCTGGTGTCCCTCGTGGACACGCTGCGCGCCGAGAACGA
CATACTGGCGCAGCAGAGGCGCGCGCTGGAGAGGGCCATTGCAGACGCGC
GCGCCGCCGCCGCCGCCGCGGAGTTTACGCACGCCGCGGAGAGGGCGGAG
CTGCTGAGCAATGCTGCGGCGCTGGAGGCGACGAGGGCAGCGCTCAGGGA
CACAATCGAGAAGCTGAGCGCTGAGCTGGCGACCATGCAGGGGCGCCAGG
CGCAGCTGCTGCAGCAGATCGCGGCGCTGCAGCAGCGGCCCGCCAAGGGT
GACGCTGCTGCAGCGGCGGCGGCAGCAGCGGAGGCGGCAGCGGTGGCAGA
GGCGGCAGCAGCAGCGGAGGCGGCGGCGGCAGCAGAGGCGGCGGCGGCGG
CAGCGGCGCAGCCGGAGCCTCCCATGAGCCCCAACTCGCGGCACAGGCTG
TCGCAGCAGCTGATTACGGATGAGCTGGAGATTCTTGCGGCGAATCCAGC
GCCGCCGGCTGGGCGCAAGGCGTCGGGCGGCGGTTTCGACCAGCAGCAGC
TGGAGCGCCTCAAGGCGAGCACCGCCGCGCAGCGCGAGGCGGCGAGCGTG
GCGGGGATGGGGGGGGGCTCGCACAGGGGGTCGAGGGGGGGGTAA
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