mRNA_425 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|346586
Unique NamemRNA_425
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A836CEV0_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV0_9STRA)

HSP 1 Score: 375 bits (963), Expect = 6.600e-129
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK 747
            MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK
Sbjct:    1 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK 204
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A836C887_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C887_9STRA)

HSP 1 Score: 289 bits (739), Expect = 6.370e-95
Identity = 158/204 (77.45%), Postives = 179/204 (87.75%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK 747
            MGNKVSLE ELIN++LT+KQMQR+S KC K EA+AK +VK++IQKGNMEGAKI AQNAIREKNQ+LNYLRL+SRIDAV++RLETA+R KQ++KSM+GVVKGM+ AL +MDVERIS TMDQFEKQFEDMDVVAGYMENSMG TTAMSTP DQVD LIQMVADEHGLEV S+LDDAG+VG  VP A    A   D L+QRLADLRK
Sbjct:    1 MGNKVSLETELINLKLTAKQMQRSSTKCNKAEAAAKAKVKVAIQKGNMEGAKIAAQNAIREKNQSLNYLRLASRIDAVAARLETAVRMKQVDKSMQGVVKGMRKALKTMDVERISKTMDQFEKQFEDMDVVAGYMENSMGATTAMSTPADQVDQLIQMVADEHGLEVASQLDDAGKVGAAVPQAGPAAA---DDLSQRLADLRK 201
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A7S3JWC9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWC9_9STRA)

HSP 1 Score: 249 bits (635), Expect = 3.880e-79
Identity = 139/204 (68.14%), Postives = 164/204 (80.39%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK 747
            MGNKVSL++ELIN+++TS+QM  ASKKCEK   +AKN+VK +I+KGNMEGA+I AQNAIREKNQALNYLR++SRIDAV+ RLETAIRT  M+K+M  VVKGM SAL SMDVE+IS TMD FEKQFEDMDV AGYMENSM  +TA +TP DQVD+LI  VADEH L++   LDDAG V T VP  Q+Q   + D LA RL  LR+
Sbjct:    1 MGNKVSLQDELINLKITSRQMTSASKKCEKGARTAKNQVKKAIEKGNMEGARIYAQNAIREKNQALNYLRMASRIDAVAQRLETAIRTNDMSKAMGNVVKGMSSALKSMDVEKISKTMDAFEKQFEDMDVRAGYMENSMNASTASATPEDQVDSLISEVADEHQLDLSFALDDAGAVSTKVPQEQKQSEGKED-LASRLDALRR 203
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: D7FUT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUT2_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.570e-74
Identity = 139/208 (66.83%), Postives = 158/208 (75.96%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPA----AQQQPAQEVDALAQRLADLRK 747
            MGNKVSLE ELIN+RLTSKQ QR + KC KNE +AK +++ +I+ GN+EGA+I  QNAIREKNQ+LN LRLSSRIDAV+SRLETAIR KQ+NKSME            MDVERIS TMD FE+QFEDMDV AGYMEN+MG +TAMSTP +QVD LIQMVADE GLE+G +LDDAG V   VPA    A    A E D LA RLA LRK
Sbjct:    1 MGNKVSLENELINLRLTSKQQQRGAIKCTKNENAAKAKLREAIKAGNIEGARIYGQNAIREKNQSLNCLRLSSRIDAVASRLETAIRMKQVNKSMEXXXXXXXXXXXXMDVERISKTMDSFEQQFEDMDVRAGYMENAMGDSTAMSTPQEQVDGLIQMVADEAGLELGEQLDDAGPVSNKVPAKPAAAPAAAAGEEDELANRLAALRK 208
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A7S2L033_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L033_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.110e-73
Identity = 125/203 (61.58%), Postives = 167/203 (82.27%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLR 744
            MGNK+SLE+ELIN+R+TSK M R+S KC+K+E +A +R+K +I++GN EGA+I AQ+AIREKNQA+N+LR++SRIDAV++RLETAIR   +NKSM+GVVKGM   +ASM++E +S TMD+FE+QFED+DV +GYME +M TTTA  TP DQVD+LI+ VADE+ LE+G    +AG VGTTVP+  ++ A + D LA RLA+LR
Sbjct:    1 MGNKISLEDELINLRITSKSMNRSSVKCKKSEKAALDRLKKAIKQGNTEGARIYAQDAIREKNQAVNHLRMASRIDAVAARLETAIRMDTVNKSMQGVVKGMSKGMASMNIEEMSKTMDKFEQQFEDLDVKSGYMEEAMNTTTATQTPADQVDHLIKYVADENQLELGDAFLEAGPVGTTVPSQPEKVAADKDDLAARLANLR 203
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A7S1Z7S6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z7S6_TRICV)

HSP 1 Score: 225 bits (574), Expect = 6.840e-70
Identity = 122/204 (59.80%), Postives = 159/204 (77.94%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEV-DALAQRLADLR 744
            MGNK+SLE+ELIN+R+TSKQMQR++KKCEKNE +A  ++K +I++GN EGA+I  Q+AIREKNQALN +R++SRIDAVSSR+ETA+R  Q+  SM+GVVKGM+  L SM++E++S+TMD+FE QFED+DV   YME +M  TTA STP +QVD LI MVADE+ LE+G    +AG VG   P  +Q   + V D L  RLA+LR
Sbjct:    1 MGNKISLEDELINLRITSKQMQRSAKKCEKNEKAALEKLKKAIKQGNAEGARIYGQDAIREKNQALNCIRMASRIDAVSSRIETAVRMNQVTSSMKGVVKGMEKGLQSMNIEQLSATMDKFESQFEDLDVKTQYMEGAMNATTATSTPAEQVDELITMVADENNLELGDAFAEAGPVGKKAPEVKQPEKESVQDDLEARLANLR 204
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A6U5G2I4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5G2I4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 8.050e-69
Identity = 120/205 (58.54%), Postives = 161/205 (78.54%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQE--VDALAQRLADLR 744
            MGNKVSLEEELIN+R+ SKQMQR+SKKCEKNE +A  ++K +IQ+GN EGA+I AQ+AIREKNQAL++L+++SRIDA ++R+ETA+R   + K M GV KG+  +LASMD+E+IS+ MD+FE+QFED+DV   YME SM  TTA STP  QVD+L++MVAD++ LE+G    +AG VG   P  +Q+ A++   D+L  RLA+LR
Sbjct:    1 MGNKVSLEEELINLRIVSKQMQRSSKKCEKNEKAATQKLKKAIQQGNSEGARIYAQDAIREKNQALSHLKMASRIDACANRVETAVRMDTVTKGMMGVTKGLDKSLASMDIEKISALMDKFEQQFEDLDVKTQYMEGSMNATTATSTPAGQVDDLVRMVADQNNLELGEAFIEAGPVGKKTPQLKQETAEDPVADSLEARLANLR 205
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A2D4BK45_PYTIN (Charged multivesicular body protein 1b-2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK45_PYTIN)

HSP 1 Score: 221 bits (564), Expect = 2.360e-68
Identity = 119/201 (59.20%), Postives = 159/201 (79.10%), Query Frame = 1 
Query:  145 KVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK 747
            K  LE+EL NM+ T+K + R +KKCEKN+A+ K ++K +I++GNMEGA+I AQN IREKNQ+L+YL+L+SRIDAV+SR++TAI   Q+  +M GVVKGM + +ASM+VE+ISSTMDQFEK FED+DV + YME +M   T++STP DQVD+LIQMVAD++GL+V  +LD AGRV T +P+A  Q  +  D L+ RLA LRK
Sbjct:    7 KDKLEDELFNMKFTAKNLLRCAKKCEKNQAAQKTKLKKAIEQGNMEGARIYAQNVIREKNQSLSYLQLASRIDAVASRVQTAIAMGQLKTNMRGVVKGMDTVMASMNVEKISSTMDQFEKHFEDLDVRSAYMEGAMSNGTSISTPVDQVDDLIQMVADDNGLKVAGQLDSAGRVVTDLPSAAVQEKKAEDELSMRLAALRK 207
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A8J2SVV2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVV2_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.490e-68
Identity = 125/204 (61.27%), Postives = 152/204 (74.51%), Query Frame = 1 
Query:  136 MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK 747
            MG +VSL+EELINM++TSKQM  ASKKCEKNE   +  VK +I+KGN EGA+I AQNAIREKN  LNYLR+S+RIDAV+ RL+T ++ + M KS+  V KG+ SAL SM+VE+IS  MD FEKQFED+DV A YME++MG TTA +TP DQVD LI  VADEH L+V   LDDAG+VG T PA  + P      LA RL  LR+
Sbjct:    1 MGQRVSLQEELINMKITSKQMVSASKKCEKNEKKYRKDVKKAIEKGNAEGARIYAQNAIREKNSGLNYLRMSARIDAVAQRLDTVVKNQAMQKSIVKVNKGLSSALKSMNVEKISKEMDAFEKQFEDIDVRAKYMEDAMGNTTASATPEDQVDALISQVADEHQLDVSFALDDAGQVGHTAPAQAEDP------LASRLEALRR 198
[Close]
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Match: A0A8K1CUU3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUU3_PYTOL)

HSP 1 Score: 221 bits (563), Expect = 3.340e-68
Identity = 120/201 (59.70%), Postives = 158/201 (78.61%), Query Frame = 1 
Query:  145 KVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEGAKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVKGMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPDQVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLADLRK 747
            K  LE+EL NM+ T+K + R +KKCEKN+A+ K ++K +I++GNMEGA+I AQN IREKNQAL+YL+L+SRIDAV+SR++TAI   Q+ ++M GVVKGM + +ASM+VE+IS TMDQFE+QFED+DV A YME +M   T+M+TP DQVD+LIQMVADE+GL+V  +LD AG VGT +P A     +  D L+ RLA LRK
Sbjct:    7 KNKLEDELFNMKFTAKSLIRNAKKCEKNQAAQKIKLKKAIEQGNMEGARIYAQNVIREKNQALSYLQLASRIDAVASRVQTAIAMGQLKQNMSGVVKGMDTVMASMNVEKISRTMDQFEQQFEDLDVRAAYMEGAMSNGTSMTTPVDQVDDLIQMVADENGLKVAGQLDSAGMVGTELPTAAAAEKKSQDDLSMRLAALRK 207
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346586 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CEV0_9STRA6.600e-129100.00Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836C887_9STRA6.370e-9577.45Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3JWC9_9STRA3.880e-7968.14Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
D7FUT2_ECTSI1.570e-7466.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2L033_9STRA1.110e-7361.58Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1Z7S6_TRICV6.840e-7059.80Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U5G2I4_9STRA8.050e-6958.54Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A2D4BK45_PYTIN2.360e-6859.20Charged multivesicular body protein 1b-2 n=1 Tax=P... [more]
A0A8J2SVV2_9STRA2.490e-6861.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CUU3_PYTOL3.340e-6859.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1452861..1458467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|346586|estExt_Genemark1.C_Ctg_3_t10420
BRITEko00000,ko00001,ko00002,ko03000,ko04131,ko04147
KEGG ModuleM00412
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG koko:K12197,ko:K16230
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005815,GO:0005856,GO:0006323,GO:0006355,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007076,GO:0007080,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010824,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016363,GO:0016458,GO:0016787,GO:0019058,GO:0019068,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0019941,GO:0021549,GO:0022037,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030117,GO:0030163,GO:0030261,GO:0030496,GO:0030902,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032509,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034399,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042058,GO:0042059,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045177,GO:0045184,GO:0045324,GO:0045786,GO:0045892,GO:0045934,GO:0046605,GO:0046755,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048285,GO:0048475,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070013,GO:0070507,GO:0070727,GO:0070925,GO:0071103,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0090169,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:0140096,GO:1901184,GO:1901185,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1902115,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904896,GO:1904903,GO:2000112,GO:2000113,GO:2001141
Preferred nameCHMP1A
Descriptionvacuolar transport
COG categoryN
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5491@1|root,KOG3232@2759|Eukaryota
Evalue1.19e-76
Seed ortholog2880.D7FUT2
Hectar predicted targeting categoryother localisation
TranscriptId346908
TrackFilteredModels1
ProteinId346586
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346586gene_425Tribonema minus UTEX_B_3156 geneContig_3 1452861..1458467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346586Trimin1|346586|estExt_Genemark1.C_Ctg_3_t10420Tribonema minus UTEX_B_3156 polypeptideContig_3 1453105..1458082 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_425_6exon_425_6Tribonema minus UTEX_B_3156 exonContig_3 1452861..1453266 -
exon_425_5exon_425_5Tribonema minus UTEX_B_3156 exonContig_3 1454598..1454690 -
exon_425_4exon_425_4Tribonema minus UTEX_B_3156 exonContig_3 1456701..1456868 -
exon_425_3exon_425_3Tribonema minus UTEX_B_3156 exonContig_3 1457398..1457545 -
exon_425_2exon_425_2Tribonema minus UTEX_B_3156 exonContig_3 1458039..1458117 -
exon_425_1exon_425_1Tribonema minus UTEX_B_3156 exonContig_3 1458368..1458467 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_425UTR3_425Tribonema minus UTEX_B_3156 three_prime_UTRContig_3 1452861..1453104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_425CDS_425Tribonema minus UTEX_B_3156 CDSContig_3 1458039..1458082 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_425UTR5_425Tribonema minus UTEX_B_3156 five_prime_UTRContig_3 1458368..1458467 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_425 ID=mRNA_425|Name=jgi.p|Trimin1|346586|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=994bp|location=Sequence derived from alignment at Contig_3:1452861..1458467- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGTAGCTAGCCCACGTGAGTCGGGGTTGCTGCGTTTGACAGACGGCAC
ATCGAGGGCTTTCGTCGACGGAGCGGTCCCGCCTTTCACCAGGACACAAG
GGTCTCACTAGCACTGCGGAGCACATCACGTGACCATGGGCAACAAGGTT
TCACTCGAGGAGGAGCTTATCAACATGAGGTTGACATCCAAGCAGATGCA
GCGCGCCAGTAAAAAGTGCGAAAAGAATGAGGCATCTGCCAAAAATCGTG
TCAAGCTGTCCATACAGAAGGGGAATATGGAGGGGGCGAAGATTGAGGCG
CAAAATGCTATTCGGGAGAAAAATCAGGCGCTCAATTACTTGCGGTTATC
GAGTCGCATAGATGCGGTCTCATCGCGGTTGGAGACCGCGATACGCACCA
AGCAGATGAACAAGAGCATGGAGGGGGTGGTGAAGGGCATGAAGAGCGCG
CTGGCGAGCATGGACGTGGAGCGCATCAGCTCCACCATGGATCAGTTTGA
GAAGCAGTTTGAGGACATGGACGTTGTGGCGGGGTACATGGAGAACTCCA
TGGGGACAACAACCGCCATGAGCACGCCGCCAGACCAGGTCGACAACCTC
ATACAGATGGTGGCAGACGAACACGGCCTGGAGGTCGGTTCCAAGCTCGA
CGACGCTGGCAGAGTCGGCACGACCGTGCCCGCTGCTCAGCAACAGCCTG
CACAGGAAGTTGACGCTCTTGCGCAGCGACTGGCGGATCTCAGGAAATAG
CACCTGGGGGTCTGCGCGCGTGCAACTAGGGTTGGGACTAGGGTTGAGGT
TTAATAGAACCCTGGGTCTGAGTCCGAAGCTTGCGCGCGTGTGCGCGGGG
GGGGGGGGCGGGGGGGGCTGGTTGGTATATTGTAGGTTTATTAGGTGGTG
CTGGTGTAGTGGCGGCTGAGGATGGTTGTTAGCACGCGCAGATATTGTTC
ACCCACCTGGTGTGGTTGGAGCAGTGTGTAAATGTGTACAAAAC
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protein sequence of jgi.p|Trimin1|346586

>Trimin1|346586|estExt_Genemark1.C_Ctg_3_t10420 ID=Trimin1|346586|estExt_Genemark1.C_Ctg_3_t10420|Name=jgi.p|Trimin1|346586|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=205bp
MGNKVSLEEELINMRLTSKQMQRASKKCEKNEASAKNRVKLSIQKGNMEG
AKIEAQNAIREKNQALNYLRLSSRIDAVSSRLETAIRTKQMNKSMEGVVK
GMKSALASMDVERISSTMDQFEKQFEDMDVVAGYMENSMGTTTAMSTPPD
QVDNLIQMVADEHGLEVGSKLDDAGRVGTTVPAAQQQPAQEVDALAQRLA
DLRK*
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mRNA from alignment at Contig_3:1452861..1458467-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_425 ID=mRNA_425|Name=jgi.p|Trimin1|346586|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5607bp|location=Sequence derived from alignment at Contig_3:1452861..1458467- (Tribonema minus UTEX_B_3156 )
GGCGTAGCTAGCCCACGTGAGTCGGGGTTGCTGCGTTTGACAGACGGCAC
ATCGAGGGCTTTCGTCGACGGAGCGGTCCCGCCTTTCACCAGGACACAAG
GTGACAGACTTGATTACGCCAGAATTTTCTCCTTGTGTTCTGCTTGCCTG
CAGCTGCCCTGGCGCGCGTACTCACAGCACAAGCTGTTGCGCAACGCCCG
GCATCACTAGCACATACATCTCACTTTTCGCTTGTTGCGGGTCGAGTGTT
CTCAAGGTCACCAACATGAACTTGCCTCTGATCAAATCTTGCGACAACTT
TCACGGACCTCAATTCTGCCGGCTTTGCTGTACTTCTGCCGTTGCTGCAG
GGTCTCACTAGCACTGCGGAGCACATCACGTGACCATGGGCAACAAGGTT
TCACTCGAGGAGGAGCTTATCAACATGAGGTACAAGACCATTTTTCTCAA
TTGCCATAATGAAGCAATCATTCTTGCTTTCTGGCTAGCATGAAATTTTT
AGCCTTTCTCACAGTCCTCCCCATATACTGCAGATAAAGCAACGCGTCAA
ATCATTTCAAGCGAGCCAATCATTGTCCAGAGCAACCCGTGCATCTTGGT
CTGATTTCACAGTCACTTGTATTGCATGACACCTGCAAGGACATTGGTGG
CTAGCTGTGCGTTATGCCTGCCATCGCCCGTCATAAGGAGCCCTGAGACA
CCCATGTACTCTTGAGTCCTGTCAACCTGTGTGTAGTTGCAGTCAGTGTC
GTCGCAATCAAGATGCTCGACGCAGGTTCAGGATACCTTTATTCCCTGCA
GGCCTTCATGCACGAATTTGCGGTAACGTTGTTGTCCGCTTGATCTGCCG
CTAAGTCAGGAATGAAGCTGATTTGACAGCGACAAATGATTGTCGCGATC
TCTACTGTGCTGATGCTCGCAGGTTGACATCCAAGCAGATGCAGCGCGCC
AGTAAAAAGTGCGAAAAGAATGAGGCATCTGCCAAAAATCGTGTCAAGCT
GTCCATACAGAAGGGGAATATGGAGGGGGCGAAGATTGAGGCGCAAAATG
CTATTCGGGAGAAAAATCAGGTGGGATTCACTCAGGTTGTGAAGTACTTA
TGTGGACACCAATGAAGTCGGAGCGTACAGTCTGACATGCTACGACCGCC
GATACGTCATTTTCCTCAAGTAATGCAGTGTTTGAGCTCGTAGGACCTGA
CGTTTAGCCCTAGACACCTGATATTGCTCCTGAGCGATGCGCTTCAGAGT
TCAATGGAGGGTGAAGCGGAATCTATTTCTTTAAGAGTCATATCGCCAAT
CTATGCTTGAGGCTCAAGTTGCGTGCATGCGTACACGCGTCATCTGGTAA
CACTGGATCCAAAGCGGGTCAGCAGCGACGCCCCTGCCTTCTGCAATTCA
CGGATCTGATGGCCGCGGCGGGTCACAAATAATGGTATTGGCCTGTCACC
GTTCACCAATTGTATTGAAATCTGGCTCCTTTTGCATAGGCTTATGCAGC
CGCTCAACCACTTGCATGATACACAACACGTTACCTATTGCATGTTAGGC
ATTCACTAAATCGAACTTGGACCTTGGCGCCTCCTGCTGAGGCATGCAGG
CGCTCAATTACTTGCGGTTATCGAGTCGCATAGATGCGGTCTCATCGCGG
TTGGAGACCGCGATACGCACCAAGCAGATGAACAAGAGCATGGAGGGGGT
GGTGAAGGGCATGAAGAGCGCGCTGGCGAGCATGGACGTGGAGCGCATCA
GCTCCACCATGGATCAGGTGAGCGTCAACTTCAACTCCATACTTCAATTC
CAACTTCACACTACATCGCGCTCCCTGCAGCAGTCAAAGTCAAATTGCAT
TTTTGCTGAACTTCACACTACAGCGCCCTCCCTGCAGTAGTCAAAGTCAA
TGGCATTTTTGCTGAAGTTCACACTACATCGCGCTCCCTGCAGTACCGTA
GTGTCGCTATTTAAGCTGGCCGGACACCTAATCAAAGTGATATTTGGCCC
CAAAACTATTTAAGGCTGGGTAATACATTCGCTGGATTCAATATAAGCCG
ACCCGCAGTTGGTGTGCGTGTAGCTGCACAAGTTGGTGCGTGTAGCTAGC
TGCCTGCGCGCTGAACTGAAGTTGCTGTTGCTGCCTGCACGAGTGGCTCA
GGGTGCCCTCTTGAAGGTATCTGTGATGCAATGCTGCGCTCCAACGTCTG
CAGCCCACTTCTGAGCCTGTTTCAGCTTCGTGCGCAGCCGCGCCGAAAAA
ACATGCAAAACTCAACAACAACTTGAACTAAACGCTGTTTCTGTATCGCG
CGCCCATGTGGGCCTGTTGTGTGGCCTGTAAGGGGTGGCTTATAGAGGTC
AACGTAACATAAGCCTGGGGATACAAAGGCTTGATTCGATTTGCTTGTCC
GACGTAAACAAATGCCTGTTTTAATTAGGTGACCGGCCAGCTTAGATAGC
GACATGACGGTAGTCAAAGTCAAATGGCATTTTTCTGAGGAGGAGCTGCA
GTACGCGCACCACGCAGCTCAGGCTTGTGGTCGTGTGCGTATGCGACCAT
TTGCGCAGCGGGGAATGTCGCGCTTTGCTGTGGCATGCCCTGCACGGCAA
TCTTCTGCTGAGTGTACAACTGTGCTGAAGTCGATTTGTGGGCTACAGGG
CACAGATGCGCTGCGTGCGTTTTGCGGTTTGCGTTTTGCTGTCCCAGCAG
GTTTAACCCTAACCCTAACTCTATTGCCTGCGCTCTCTGTGTTGGGGGGT
GGTGCGGGGCCTCGCCATGGGGGCTGTACAAGCGCCAAGTGGCAACATCA
GTACCTCATGTGCTCTAGTTGTGTTTTTGCAGTTCACTGGCCATTGCAGG
AATGAGGTGTGGCTTGTGAGTGTCCTGTAATTCTGTGTCCTCTCTGGGTC
TGTGGGTAGGGCAGTGTTGCCATGGCCCGTGACATTCAGCTTCGTCAGAG
TACACTTAGGGTTAGGTTCCCCACTTAGGGTTAGGGAACCTAACCCTAAC
CCTACCCCTAACATAGGGTTCAGCTCCGTCAGATAACACTTGTGACGTAA
GCATGCCCAGTTTGGCAGCCTTTGTCTCTGGCTGCACTAGTAGCTTGCGC
CGGAGTACGCGCACAAGCCTCCCAGTTCTGACTCTGGAGTTCTGCAACTA
GTTCCGGGGCCGATGGCTAGGGCTGTAATAGCCGGAACCTTCGGAACTAA
AAAACAAGCGCAAACGTCACAAAGCACGTCTGCCAGTACCGTAAGCTTGC
TGCAGCAGCTCACACGCCTGGTTTAAGCGCAAATTCAGGTGTTGCCTTGA
AGTGTAAGTAGGGTCGCGACTACTTTAGCCTGCAACCCTAGGTGTAGGGT
TAGGGTTACACCAAACACCCTAGCTTTAAGGGTAGGTAGGGCTAGGGTTA
TGTTGCCGACAATAAGTAGGGTTATGTTAGAAGTGTGTTGCTGGTCACTT
GAACTATGAGGCGCATCTAGTTGAACCGCTAGTGCCCCCACGGAAGTGGA
AAAAAGGCTGTGCAGACAGCATTGATGTGGTAACCATGGGGACCGCAATG
TACTTCCGGAGGTTCCGTGGAGTTCAGGGAGTTCCGAGAGGAGCCAGCCT
TCCCAGAACTTGAACTTGGAGGCCTAAGAGGTTTGTGCGTGTTCTCTGGC
TTGCGCTGCCATGCTTTGGTAGTGGTACAGTATTTTCGTTCTCATGTATC
GCTGATGACGTCATTTTCGTAATCGTGGCATTGTGCCTAAATCACCGTGC
CACCGTGCTGCGCGTCAACCCTTGCAGTTTGAGAAGCAGTTTGAGGACAT
GGACGTTGTGGCGGGGTACATGGAGAACTCCATGGGGACAACAACCGCCA
TGAGCACGCCGCCAGACCAGGTGAGCGCTGTCACTGAGCACTGCCACTTG
AAGAGGATCATGTTGAGGTGTTCACCTGCAAGTCACTGTAGGTGAGTCAG
TTGCGTCGGGACAACAACGGCCATGAGCACGCCGCCGGATCAGGTGAGCG
CCATCGCTGAGCACTGCCACCTGTCAAAAATGTTGAAGTTTTTCACCTAG
AAGTTGAAGTTTATTGTCATTTGTTCAAGTTTTTCACCTTAGTTGCGTCG
GGATGACAACGGCCGTGAGCACGCTGCCGGACCAGGTGAGCGCTGTCACT
TGACGTCAAAAATGTTGAAGTGTGCGCCTCAGTTGTGTTGCAGCGAGCAA
TGTGGTAAATGGCGCTCTACGCACGCCAAGTCTAAAATGTTGAAAGTGTT
TCACCTCAGTTGTGTCTGGACAAGAATGGCCATGAGCATGCTGCCGGACC
AGGTGAGCGCTGTCACTGAGCACTGCATCCAAAGTCTAAACTGTTGAAGT
TTTGGACCCTAGCTGTGTTGCAGCGAGCAACATGGCAACTGGCGCTCTAT
CGCACCCAAGGTCTGAAATGGTGAAGTTGATTGCCCTAGTTGCGTCGCAG
CCAGCGTGGCGACTGGCGCTCTATTGCAGCGATCGGCGCGCCACGACAAG
TCAGCACTGCCAGACATACTTTCACTGTTTGAAGTAGAGCTTGGGTTTTG
TGCCGGGTGAAGTTGAACCGTGCAACGCGGTGGCTGGCACTCTACTACAG
CCATGCGCACGCCGCCGGACCACGTGAATACTGTTGCCAAGCACTGTCAC
TCAAGGTCCTGCCATCTTGAAGTTCAGTTTTTTTTGCCACCACACTCCAC
CACGGCAATGAACGTGCCTACCGCCGGACCAGGCGAGCACTGCCGTCCCA
CTCCTGAGTAGTAAGCCGGCTTGAAGCGATGATCCTCAGTTGTGTTTGCT
GTGGCGCAGCTTAGTAGCTGACGCTCTAATGCAGCGGGAAGCATGCATAT
GGTCGCACCAGATGAGCACTCCCAATAACCACCGTTTGCCACTGACATCT
GCAAGCCCTAGGCCGTCTGACCAGCCTACCCCCCACACTGCCAACAAATG
TGCCTGGCTGAGAGCCCCTTTTCGTGCGCGCGCAAACACGTGAGCGCTGC
TTTTATTTCTTCATCTGCCGTATATAGGTATATTGAGGTGCACCTTTGAA
TTAGCTGCATGGATGTCACCTTTGTGAGGTGTTGCAGCGGCCTTCACCCC
CCACGCTCTGGCATATCTAGACTGAACACGCATATACTCACCCACCTGCG
TCTGAACGCTGCTGCGCAACACGCCCCCCCCCCCCCCCCCCCACCCCTCA
GGTCGACAACCTCATACAGATGGTGGCAGACGAACACGGCCTGGAGGTCG
GTTCCAAGCTCGACGACGCTGGCAGAGTCGGCACGACCGTGCCCGCTGCT
CAGCAACAGCCTGCACAGGAAGTTGACGCTCTTGCGCAGCGACTGGCGGA
TCTCAGGAAATAGCACCTGGGGGTCTGCGCGCGTGCAACTAGGGTTGGGA
CTAGGGTTGAGGTTTAATAGAACCCTGGGTCTGAGTCCGAAGCTTGCGCG
CGTGTGCGCGGGGGGGGGGGGCGGGGGGGGCTGGTTGGTATATTGTAGGT
TTATTAGGTGGTGCTGGTGTAGTGGCGGCTGAGGATGGTTGTTAGCACGC
GCAGATATTGTTCACCCACCTGGTGTGGTTGGAGCAGTGTGTAAATGTGT
ACAAAAC
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Coding sequence (CDS) from alignment at Contig_3:1452861..1458467-

>mRNA_425 ID=mRNA_425|Name=jgi.p|Trimin1|346586|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=615bp|location=Sequence derived from alignment at Contig_3:1452861..1458467- (Tribonema minus UTEX_B_3156 )
ATGGGCAACAAGGTTTCACTCGAGGAGGAGCTTATCAACATGAGGTTGAC
ATCCAAGCAGATGCAGCGCGCCAGTAAAAAGTGCGAAAAGAATGAGGCAT
CTGCCAAAAATCGTGTCAAGCTGTCCATACAGAAGGGGAATATGGAGGGG
GCGAAGATTGAGGCGCAAAATGCTATTCGGGAGAAAAATCAGGCGCTCAA
TTACTTGCGGTTATCGAGTCGCATAGATGCGGTCTCATCGCGGTTGGAGA
CCGCGATACGCACCAAGCAGATGAACAAGAGCATGGAGGGGGTGGTGAAG
GGCATGAAGAGCGCGCTGGCGAGCATGGACGTGGAGCGCATCAGCTCCAC
CATGGATCAGTTTGAGAAGCAGTTTGAGGACATGGACGTTGTGGCGGGGT
ACATGGAGAACTCCATGGGGACAACAACCGCCATGAGCACGCCGCCAGAC
CAGGTCGACAACCTCATACAGATGGTGGCAGACGAACACGGCCTGGAGGT
CGGTTCCAAGCTCGACGACGCTGGCAGAGTCGGCACGACCGTGCCCGCTG
CTCAGCAACAGCCTGCACAGGAAGTTGACGCTCTTGCGCAGCGACTGGCG
GATCTCAGGAAATAG
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