mRNA_4208 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A0A835Z4B7_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B7_9STRA) HSP 1 Score: 298 bits (763), Expect = 3.880e-102 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
Query: 1 QSTQAPTNEIRKEAEASLRACEASAGFSDALLAIVSSDAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 468
QSTQAPTNEIRKEAEASLRACEASAGFSDALLAIVSSDAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR
Sbjct: 1 QSTQAPTNEIRKEAEASLRACEASAGFSDALLAIVSSDAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 156
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI) HSP 1 Score: 104 bits (260), Expect = 3.870e-23 Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 1
Query: 4 STQAPTNEIRKEAEASLRACEASAGFSDALLAIVSSDA-PSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 468
STQ+P E+RK AE L+ACE G++ L AI ++ A P+ R AVILLK +VR W+ +RG V+ EK +RE L G +E + V QLAVL K+AR DWP +WP LFP L+ +L+ P QR +L + VLKEL KR
Sbjct: 25 STQSPVPEVRKPAEQLLKACEELPGYTSVLAAIATTHAAPTDARATAVILLKNMVRVRWR-SRGGRGAVVGDGEKAALREVLAG-AGMEEPEERVVSQLAVLMGKIARVDWPGQWPQLFPNLVASLLSGSP----RRQRMSLCGTNEVLKELSMKR 174
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A8IAG8_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IAG8_CHLRE) HSP 1 Score: 96.3 bits (238), Expect = 3.440e-20 Identity = 62/151 (41.06%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 25 EIRKEAEASLRACEASAGFSDALLAIVSS-DAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGG--LEQRRALFVIHHVLKELETKR 468
E++K+AEA +++ ++ AGFS AL IV + +A + R +A + LK + +WK G + + S EEK +R L G +P+ DN +AVQ+A++ +KVAR D+P +WP LF LL V +GG L RR ++HHVLKEL +KR
Sbjct: 26 EVQKQAEAYIQSLDSRAGFSSALAEIVGNREADHSARYLASVHLKNSIHRNWKKRVGTSTGI-SPEEKAHLRSRLSGLIPQD--DNQIAVQVALVYAKVARFDYPADWPGLFADLLANV------NGGSALTVRRVYLILHHVLKELSSKR 167
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A0A061SEL5_9CHLO (Importin beta-2 subunit family protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SEL5_9CHLO) HSP 1 Score: 93.2 bits (230), Expect = 4.770e-20 Identity = 65/149 (43.62%), Postives = 87/149 (58.39%), Query Frame = 1
Query: 31 RKEAEASLRACEASAGFSDALLAIVSS-DAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGG--LEQRRALFVIHHVLKELETKR 468
RK AE ++ E GF LL IVS+ +A +VR +A + LK + W+ R +S EEKQ +R LL + E +N +A Q+AV+ SK+ARHD+PREWP LF LLN V GG L QRR V+H++LKEL +KR
Sbjct: 35 RKLAEKTIAQLEWCPGFCSRLLEIVSAKNAEHSVRWLASLQLKNTISWLWRPRRNTGG--MSVEEKQHIRVQLLNCLA--EENNQIATQIAVVFSKIARHDYPREWPSLFSDLLNGV------QGGNLLLQRRIYLVLHYILKELSSKR 173
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A0A835WH05_9CHLO (Importin N-terminal domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WH05_9CHLO) HSP 1 Score: 95.9 bits (237), Expect = 4.790e-20 Identity = 62/151 (41.06%), Postives = 93/151 (61.59%), Query Frame = 1
Query: 25 EIRKEAEASLRACEASAGFSDALLAIVSS-DAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGG--LEQRRALFVIHHVLKELETKR 468
E++K+AEA +++ ++ AGFS AL IV + +A + R +A + LK + +WK GA+ + EEK +R L +P++ DN +AVQ+A++ +KVAR D+P EWP LF LL V +GG L RR ++HHVLKEL +KR
Sbjct: 26 EVQKQAEAYIQSLDSRAGFSSALAEIVGNREADHSARYLASVHLKNSIHRNWKKRVGASTGI-GPEEKAHLRSRLSSLIPQE--DNQIAVQVALVYAKVARFDYPAEWPGLFSDLLANV------NGGSALTVRRVYLILHHVLKELSSKR 167
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A0A067CRD5_SAPPC (Importin N-terminal domain-containing protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRD5_SAPPC) HSP 1 Score: 94.4 bits (233), Expect = 1.620e-19 Identity = 61/151 (40.40%), Postives = 88/151 (58.28%), Query Frame = 1
Query: 16 PTNEIRKEAEASLRACEASAGFSDALLAIVSSDAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 468
P E+R EA+L+ C GF+ L ++ A RL+A + LK V SW TRG+ ++S+EEK +VR LL +E + VA QLAV +++AR D+P+EWPDLF L +++ P L+Q RAL V+ V+KEL T+R
Sbjct: 25 PYEEVRVAGEATLQQCMKLPGFACLCLEVLKQPVGDATRLMAALSLKNAVASSW-ITRGSRQFMISAEEKLQVRRGLLQHT--EETNKAVATQLAVTIARIARSDFPKEWPDLFGILRDLIQQGSP----LQQMRALRVLKSVVKELATRR 168
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: UPI000873A512 (importin-11 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000873A512) HSP 1 Score: 93.6 bits (231), Expect = 3.010e-19 Identity = 64/146 (43.84%), Postives = 81/146 (55.48%), Query Frame = 1
Query: 34 KEAEASLRACEASAGFSDALLAIVSSDAPSA-VRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 468
K AE LR E GF L I+S+ + VR +AV+ +K + W R A +S EEK +R LL E + +AVQ AVL SKVAR DWPREWP+LFP LL V +P GL Q RAL +HHV+K + +KR
Sbjct: 26 KPAEGKLREWETQPGFYTVLFNIISNHSMDVNVRWMAVLYMKNGIDKYW---RKNAPNAISEEEKLNIRHGLLCNF--SEPISQIAVQRAVLVSKVARFDWPREWPNLFPTLLQAVESP----DGLVQHRALLTLHHVVKAIASKR 162
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A0A8J4B300_9CHLO (Importin N-terminal domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B300_9CHLO) HSP 1 Score: 93.6 bits (231), Expect = 3.060e-19 Identity = 60/149 (40.27%), Postives = 91/149 (61.07%), Query Frame = 1
Query: 25 EIRKEAEASLRACEASAGFSDALLAIVSS-DAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 468
E++K+AEA +++ ++ GFS AL IVS+ DA + R +A + LK + +WK AA +S EEK +R L +P+ DN +AVQ+A++ +K+AR D+P EWP LF L+ + + P L RR ++HHVLKEL +KR
Sbjct: 26 EVQKQAEAYIQSLDSRPGFSSALAEIVSTRDADHSARYLASVHLKNSIHRNWKKRISHAA--ISPEEKAHLRAKLSQLIPQD--DNQIAVQVALVYAKIARFDYPSEWPGLFSDLMRNLGSGNP----LSVRRVYLILHHVLKELSSKR 166
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A0A1V9YZ41_9STRA (Importin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZ41_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 4.100e-19 Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 1
Query: 16 PTNEIRKEAEASLRACEASAGFSDALLAIVSSDAPSAVRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 468
P E+R EA+L+ C GF+ + ++ A RL+A + LK V SW RG+ +S++EK +VR LL + +E + VA QLAV +++ARHD+P+EWPDLF AL +I+ P L+Q RAL V+ V+KEL T+R
Sbjct: 25 PYPEVRVGGEATLQQCMKLPGFACLCMELLQQPLADATRLMAALSLKNAVTNSW-VVRGSRQFSISADEKVQVRLRLLQHM--EEPNKAVATQLAVTVARIARHDFPKEWPDLFGALRDIIQQGSP----LQQARALRVLKAVVKELATRR 168
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Match: A0A653D6I5_CALMS (Importin N-terminal domain-containing protein n=2 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653D6I5_CALMS) HSP 1 Score: 92.4 bits (228), Expect = 7.600e-19 Identity = 62/148 (41.89%), Postives = 83/148 (56.08%), Query Frame = 1
Query: 28 IRKEAEASLRACEASAGFSDALLAIVSSDAPSA-VRLVAVILLKGLVRGSWKATRGAAARVLSSEEKQRVREFLLGPVPRQEGDNGVAVQLAVLSSKVARHDWPREWPDLFPALLNIVLTPRPPDGGLEQRRALFVIHHVLKELETKR 468
+ K AE LR E GF LL ++S VR +AV+ LK V W R A +S +EK +R+ LL +E N +AVQ AVL SKVAR DWPREWP++FP LL + +P G+ Q R+L +HHV+K + +KR
Sbjct: 22 VLKPAETKLREWETQPGFYAVLLNVLSDFTMDVNVRFMAVLCLKNGVDRYW---RKNAPNAISEQEKSTIRQGLLCNF--EEPVNQIAVQRAVLISKVARLDWPREWPNVFPVLLQGIESP----NGMVQHRSLLTLHHVVKAVSSKR 160 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142495 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4208 ID=mRNA_4208|Name=jgi.p|Trimin1|142495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_20:1279709..1282065+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGAGCACCCAGGCACCCACGAATGAAATTCGCAAGGAAGCCGAGGCCTCback to top protein sequence of jgi.p|Trimin1|142495 >Trimin1|142495|gw1.20.136.1 ID=Trimin1|142495|gw1.20.136.1|Name=jgi.p|Trimin1|142495|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp QSTQAPTNEIRKEAEASLRACEASAGFSDALLAIVSSDAPSAVRLVAVILback to top mRNA from alignment at Contig_20:1279709..1282065+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4208 ID=mRNA_4208|Name=jgi.p|Trimin1|142495|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2357bp|location=Sequence derived from alignment at Contig_20:1279709..1282065+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:1279709..1282065+ >mRNA_4208 ID=mRNA_4208|Name=jgi.p|Trimin1|142495|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_20:1279709..1282065+ (Tribonema minus UTEX_B_3156 )back to top |