mRNA_4186 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162256
Unique NamemRNA_4186
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: A0A835Z5Q9_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q9_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.810e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 MGTWALQVAHNAITVYVCITVYVSATKCDFPTTGALAATTCSEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSNRIRNAQRARGKATKAAP 453
            MGTWALQVAHNAITVYVCITVYVSATKCDFPTTGALAATTCSEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSNRIRNAQRARGKATKAAP
Sbjct:    1 MGTWALQVAHNAITVYVCITVYVSATKCDFPTTGALAATTCSEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSNRIRNAQRARGKATKAAP 151
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: A0A835YKU0_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.840e-47
Identity = 85/119 (71.43%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:   97 TGALAATTCSEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSNRIRNAQRARGKATKAAP 453
            T +  A T SEEEDGILR H R HG RKW+  A SLG    RRTA AC  RW+ QLDPTINK PWTQQEEAVLA AYQQLG G W EIAKLLPGRT+ QV NRIRNA  AR KATKAAP
Sbjct:    2 TASERANTWSEEEDGILREHARLHGTRKWDLVADSLGP---RRTAKACGQRWYCQLDPTINKGPWTQQEEAVLAGAYQQLGDGKWREIAKLLPGRTALQVYNRIRNAPGARVKATKAAP 117
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: A0A2R5FYY8_9STRA (Transcription factor MYB118 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.510e-21
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  124 SEEEDGILRRHEREHGARKWNTAAASL--GHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSN 402
            S+ ED  +R   +EHG ++W+T A  L   +    RT   C  RWH  LDPTI KDPWT +EEA++AKA+Q+LG+  W+EI+KLLPGRT   + N
Sbjct:   18 SQREDDAIRTLVKEHGTKRWSTIATRLISDYRIDCRTGKQCRERWHNHLDPTIRKDPWTAEEEAIMAKAHQRLGN-RWSEISKLLPGRTDNAIKN 111
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: A0A7S0SQE8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQE8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.310e-19
Identity = 45/100 (45.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:  124 SEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSNRIRNAQR 423
            ++EED ++     EHG R W    A L      RT   C  RWH QLDP INK PWT+ EE++L  A+  LG+  W EIAK LPGRT   + N   +A+R
Sbjct:   22 TQEEDNLMMALVSEHGTRHWGLIGAKLNG----RTGKQCRERWHNQLDPAINKTPWTEHEESLLLAAHNDLGN-RWAEIAKRLPGRTDNAIKNHWNSAKR 116
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: A0A7S4JA45_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JA45_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-18
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:  124 SEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSNRIRNAQR 423
            S +ED  +     EHG R W+T AA L      RT   C  RWH  LDP INK  WT +E+  L +A+  LG+  W EIAK+LPGRT  Q+ NR  +A R
Sbjct:   68 SADEDTKIAALVEEHGTRSWSTIAAQLPS----RTGKQCRERWHNHLDPIINKGEWTVEEDRKLLEAHHALGN-RWAEIAKMLPGRTDNQIKNRWNSALR 162
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: F0YL28_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL28_AURAN)

HSP 1 Score: 84.0 bits (206), Expect = 3.580e-17
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  130 EEDGILRRHEREHGARKWNTAAASLGHLGH--RRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSN 402
            +ED  +R+   ++G R W+  A  +    +   RT   C  RWH  LDP INK+ WT++EE ++A A++ LG   W+EIAKLLPGRT   V N
Sbjct:   13 QEDNAIRQLVMKYGTRSWSVIAEHIVQDFNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKN 105
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: F0YL55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL55_AURAN)

HSP 1 Score: 82.0 bits (201), Expect = 3.880e-17
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  124 SEEEDGILRRHEREHGARKWNTAAASL--GHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSN 402
            S++ED  ++     +G R W+  A  +   +    RT   C  RWH  LDP INKD WT  EE V+A A++ LG+  W+EIAKLLPGRT   V N
Sbjct:   10 SQQEDSAIKDLVMRYGTRSWSVIAEHIVSDYNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGN-KWSEIAKLLPGRTDNHVKN 103
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: A0A7S1EGS6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EGS6_HEMAN)

HSP 1 Score: 81.6 bits (200), Expect = 4.950e-17
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 1 
Query:  124 SEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSN 402
            S EED ++ +  +EHG RKW   A+ L      R+   C  R+  QLDP+I KDPWT+ E+  ++ A ++ G+  WTEIAKLLPGRT   + N
Sbjct:    5 SSEEDELILKLVQEHGLRKWAIVASQLKG----RSGKQCRERFKNQLDPSIRKDPWTEDEDRAISVAQKKFGN-RWTEIAKLLPGRTDNGIKN 92
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: A0A7S0XYK2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XYK2_HEMAN)

HSP 1 Score: 81.6 bits (200), Expect = 6.370e-17
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:  124 SEEEDGILRRHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSN 402
            ++EED ++ +  +EHG RKW   A  L      R+   C  R+  QLDP I KDPWT +E+  ++ A ++ G+  WTEIAKLLPGRT   + N
Sbjct:   41 TQEEDDLIVKLVKEHGLRKWAIVAGQLSG----RSGKQCRERYKNQLDPAIRKDPWTDEEDRQISIAQRKFGN-RWTEIAKLLPGRTDNSIKN 128
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BLAST of jgi.p|Trimin1|162256 vs. uniprot
Match: E9HSG4_DAPPU (Uncharacterized protein (Fragment) n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9HSG4_DAPPU)

HSP 1 Score: 80.1 bits (196), Expect = 6.870e-17
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  130 EEDGILRRHEREHGARKWNTAAASL-GHLGHRRTATACSNRWHYQLDPTINKDPWTQQEEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSN 402
            +ED ++ +    +G +KW   A  L G +G +     C  RWH  LDP INK PWT++E+ +LA A++Q G+  W +IAKLLPGRT   + N
Sbjct:    1 QEDDLVVQLVHRYGPKKWTQIAKHLNGRIGKQ-----CRERWHNHLDPNINKSPWTEEEDRLLANAHEQYGN-QWAKIAKLLPGRTDNAIKN 86
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162256 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5Q9_9STRA1.810e-107100.00Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YKU0_9STRA1.840e-4771.43Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A2R5FYY8_9STRA4.510e-2149.47Transcription factor MYB118 n=1 Tax=Hondaea fermen... [more]
A0A7S0SQE8_9STRA8.310e-1945.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S4JA45_9EUKA1.270e-1846.00Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
F0YL28_AURAN3.580e-1743.01Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YL55_AURAN3.880e-1744.21Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1EGS6_HEMAN4.950e-1744.09Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0XYK2_HEMAN6.370e-1743.01Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
E9HSG4_DAPPU6.870e-1742.39Uncharacterized protein (Fragment) n=1 Tax=Daphnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:1139415..1139870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162256|e_gw1.20.266.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
KEGG koko:K09420,ko:K21769
GOsGO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001101,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006275,GO:0006355,GO:0006357,GO:0008150,GO:0008285,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009623,GO:0009719,GO:0009725,GO:0009751,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0014070,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032465,GO:0032502,GO:0032875,GO:0042127,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046677,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051302,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:0097159,GO:0140110,GO:1901181,GO:1901363,GO:1901700,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
DescriptionMyb-related protein
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,37PMK@33090|Viridiplantae,3G7Z4@35493|Streptophyta
Evalue1.77e-18
Seed ortholog13333.ERM98598
Hectar predicted targeting categoryother localisation
TranscriptId162578
TrackFilteredModels1
ProteinId162256
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162256gene_4186Tribonema minus UTEX_B_3156 geneContig_20 1139415..1139870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4186_1exon_4186_1Tribonema minus UTEX_B_3156 exonContig_20 1139415..1139870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4186CDS_4186Tribonema minus UTEX_B_3156 CDSContig_20 1139415..1139870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162256Trimin1|162256|e_gw1.20.266.1Tribonema minus UTEX_B_3156 polypeptideContig_20 1139415..1139870 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4186 ID=mRNA_4186|Name=jgi.p|Trimin1|162256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_20:1139415..1139870- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACTTGGGCGCTGCAAGTTGCACACAATGCCATCACTGTGTATGT
ATGTATCACTGTGTATGTATCAGCCACTAAATGTGACTTCCCTACCACTG
GTGCTCTTGCAGCCACCACGTGCTCCGAAGAGGAGGATGGCATCCTGCGG
AGGCACGAGCGCGAGCATGGCGCAAGAAAATGGAACACCGCTGCGGCCTC
TCTAGGGCACCTAGGGCACCGACGTACAGCAACCGCATGCAGTAACCGCT
GGCACTATCAACTGGACCCCACCATCAACAAGGATCCATGGACGCAGCAG
GAGGAGGCGGTCCTCGCCAAGGCATACCAGCAGCTCGGCCATGGCCATTG
GACCGAGATCGCGAAGCTGCTGCCTGGGCGCACTTCGGAACAAGTCTCCA
ATCGCATCAGGAATGCACAGAGGGCAAGGGGCAAGGCTACAAAAGCCGCG
CCTTGA
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protein sequence of jgi.p|Trimin1|162256

>Trimin1|162256|e_gw1.20.266.1 ID=Trimin1|162256|e_gw1.20.266.1|Name=jgi.p|Trimin1|162256|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=152bp
MGTWALQVAHNAITVYVCITVYVSATKCDFPTTGALAATTCSEEEDGILR
RHEREHGARKWNTAAASLGHLGHRRTATACSNRWHYQLDPTINKDPWTQQ
EEAVLAKAYQQLGHGHWTEIAKLLPGRTSEQVSNRIRNAQRARGKATKAA
P*
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mRNA from alignment at Contig_20:1139415..1139870-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4186 ID=mRNA_4186|Name=jgi.p|Trimin1|162256|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=456bp|location=Sequence derived from alignment at Contig_20:1139415..1139870- (Tribonema minus UTEX_B_3156 )
ATGGGCACTTGGGCGCTGCAAGTTGCACACAATGCCATCACTGTGTATGT
ATGTATCACTGTGTATGTATCAGCCACTAAATGTGACTTCCCTACCACTG
GTGCTCTTGCAGCCACCACGTGCTCCGAAGAGGAGGATGGCATCCTGCGG
AGGCACGAGCGCGAGCATGGCGCAAGAAAATGGAACACCGCTGCGGCCTC
TCTAGGGCACCTAGGGCACCGACGTACAGCAACCGCATGCAGTAACCGCT
GGCACTATCAACTGGACCCCACCATCAACAAGGATCCATGGACGCAGCAG
GAGGAGGCGGTCCTCGCCAAGGCATACCAGCAGCTCGGCCATGGCCATTG
GACCGAGATCGCGAAGCTGCTGCCTGGGCGCACTTCGGAACAAGTCTCCA
ATCGCATCAGGAATGCACAGAGGGCAAGGGGCAAGGCTACAAAAGCCGCG
CCTTGA
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Coding sequence (CDS) from alignment at Contig_20:1139415..1139870-

>mRNA_4186 ID=mRNA_4186|Name=jgi.p|Trimin1|162256|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=456bp|location=Sequence derived from alignment at Contig_20:1139415..1139870- (Tribonema minus UTEX_B_3156 )
ATGGGCACTTGGGCGCTGCAAGTTGCACACAATGCCATCACTGTGTATGT
ATGTATCACTGTGTATGTATCAGCCACTAAATGTGACTTCCCTACCACTG
GTGCTCTTGCAGCCACCACGTGCTCCGAAGAGGAGGATGGCATCCTGCGG
AGGCACGAGCGCGAGCATGGCGCAAGAAAATGGAACACCGCTGCGGCCTC
TCTAGGGCACCTAGGGCACCGACGTACAGCAACCGCATGCAGTAACCGCT
GGCACTATCAACTGGACCCCACCATCAACAAGGATCCATGGACGCAGCAG
GAGGAGGCGGTCCTCGCCAAGGCATACCAGCAGCTCGGCCATGGCCATTG
GACCGAGATCGCGAAGCTGCTGCCTGGGCGCACTTCGGAACAAGTCTCCA
ATCGCATCAGGAATGCACAGAGGGCAAGGGGCAAGGCTACAAAAGCCGCG
CCTTGA
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