mRNA_4136 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835ZBX7_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX7_9STRA) HSP 1 Score: 236 bits (602), Expect = 1.710e-78 Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 Query: 1 HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384 HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA Sbjct: 1 HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 128
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835Z250_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z250_9STRA) HSP 1 Score: 140 bits (352), Expect = 3.580e-40 Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1 Query: 100 QQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384 QQR+ HLT WQSN D HR+KILSR+V+YLQQRKPNARPEWI++VP A+RLE+SLYR AATFAEYNDM TL ARLQQLALRLG+ A+QAKLQA Sbjct: 50 QQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 144
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835Z470_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z470_9STRA) HSP 1 Score: 114 bits (286), Expect = 6.050e-31 Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 Query: 103 QRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLG 354 QR+ LT WQS+ D HRRKILSR+VLYL QR+PNA PEW+ +VP A+RLE++LYR AA+FAEYNDM TL ARLQQLALRLG Sbjct: 1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 84
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835Z5N2_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N2_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.360e-27 Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1 Query: 118 LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384 LT RWQ+N D HR+KILSR+++YL+Q + N RPEWI++VP AQRLE++LYR AA+FAEYNDM TL RLQ LA RL H A + Q+ Sbjct: 8 LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQS 96
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A836CHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH1_9STRA) HSP 1 Score: 103 bits (256), Expect = 9.380e-24 Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1 Query: 154 HRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384 HRRKILSR+V+YLQQR PN R EW++++P A+RLE+SLYR AA+FAEYNDM TL ARLQ LA RL H AR K QA Sbjct: 3 HRRKILSRIVMYLQQRNPNGRLEWVKKIPLMAKRLEDSLYRNAASFAEYNDMNTLRARLQALASRLSHKARHHKQQA 79
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: D8LPT8_ECTSI (KIX_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT8_ECTSI) HSP 1 Score: 101 bits (251), Expect = 2.340e-23 Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 Query: 130 WQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQ 369 WQSN D R++ILS++V YLQQRKPNARPEWI++VP A+RLE+SLYR A +F EY D TL RLQQLA RLG NA+Q Sbjct: 54 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEDSLYRNAKSFQEYKDHATLRQRLQQLAARLGTNAQQ 133
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.270e-22 Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 130 WQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384 WQSN D R++ILS++V YLQQRKPNARPEWI++VP A+RLE SLYR A +F EY D TL RLQQLA RLG NA+Q + +A Sbjct: 441 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEESLYRNAKSFKEYKDHATLRQRLQQLAARLGTNAQQNRAKA 525
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: K0QZC1_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZC1_THAOC) HSP 1 Score: 87.0 bits (214), Expect = 1.730e-17 Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1 Query: 79 QHSAERNQQRMTH-LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLG 354 QH +QQR L WQS++D RRK+++++V L+QRKPNA EW+ ++P+ A+RLE SLYR AA+F YND+ TL ARLQQLA+ +G Sbjct: 64 QHQVRAHQQRHPQPLNGGWQSDKDVDDRRKMIAKIVQLLRQRKPNAPAEWLNKLPQMAKRLEESLYRSAASFDAYNDISTLKARLQQLAMNIG 156
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: B7FZQ7_PHATC (Histone acetyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZQ7_PHATC) HSP 1 Score: 86.7 bits (213), Expect = 3.100e-17 Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1 Query: 118 LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNAR 366 L WQS++D RRK+++++V LQQRKPNA EW++++P+ A+RLE SLYR A +F EYND TL RLQQLA+ +G + Sbjct: 99 LNGGWQSDKDYQERRKMIAKIVHLLQQRKPNAPQEWLKKLPQMAKRLEESLYRTATSFEEYNDANTLKHRLQQLAVNIGQKTK 181
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A448Z166_9STRA (Histone acetyltransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z166_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.110e-17 Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1 Query: 118 LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNAR---QAKLQA 384 L WQS+QD RRK+++++V L+ RKPNA P+W++++P+ A+RLE SLYR A +F EYND TL RLQQLA +G R QA++QA Sbjct: 109 LNGGWQSDQDYNERRKMIAKIVHLLKLRKPNAPPDWLKKLPQMAKRLEESLYRSAKSFEEYNDASTLKQRLQQLAHNIGMKTRKIQQAQMQA 200 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4136 ID=mRNA_4136|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_20:765373..765756- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CACAGACGAACGCACGCGCCGCAAAGGCCACCATCGGCGTCAGCAAGGAGback to top protein sequence of jgi.p|Trimin1|155673 >Trimin1|155673|gw1.20.289.1 ID=Trimin1|155673|gw1.20.289.1|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRback to top mRNA from alignment at Contig_20:765373..765756- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4136 ID=mRNA_4136|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_20:765373..765756- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_20:765373..765756- >mRNA_4136 ID=mRNA_4136|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_20:765373..765756- (Tribonema minus UTEX_B_3156 )back to top |