mRNA_4136 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155673
Unique NamemRNA_4136
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835ZBX7_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX7_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.710e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1
Query:    1 HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384
            HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA
Sbjct:    1 HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 128          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835Z250_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z250_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.580e-40
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1
Query:  100 QQRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384
            QQR+ HLT  WQSN D  HR+KILSR+V+YLQQRKPNARPEWI++VP  A+RLE+SLYR AATFAEYNDM TL ARLQQLALRLG+ A+QAKLQA
Sbjct:   50 QQRVPHLTGGWQSNNDIPHRKKILSRIVVYLQQRKPNARPEWIKKVPLMAKRLEDSLYRNAATFAEYNDMNTLRARLQQLALRLGNKAQQAKLQA 144          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835Z470_9STRA (KIX_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z470_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.050e-31
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1
Query:  103 QRMTHLTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLG 354
            QR+  LT  WQS+ D  HRRKILSR+VLYL QR+PNA PEW+ +VP  A+RLE++LYR AA+FAEYNDM TL ARLQQLALRLG
Sbjct:    1 QRVAPLTGGWQSDDDVPHRRKILSRIVLYLHQRRPNAHPEWVEKVPLMAKRLEDALYRDAASFAEYNDMSTLRARLQQLALRLG 84          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A835Z5N2_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.360e-27
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1
Query:  118 LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384
            LT RWQ+N D  HR+KILSR+++YL+Q + N RPEWI++VP  AQRLE++LYR AA+FAEYNDM TL  RLQ LA RL H A   + Q+
Sbjct:    8 LTGRWQANDDMPHRKKILSRILVYLRQHRRNVRPEWIKKVPLMAQRLEDTLYRDAASFAEYNDMNTLRTRLQALASRLSHIAPSGRRQS 96          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A836CHH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.380e-24
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  154 HRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384
            HRRKILSR+V+YLQQR PN R EW++++P  A+RLE+SLYR AA+FAEYNDM TL ARLQ LA RL H AR  K QA
Sbjct:    3 HRRKILSRIVMYLQQRNPNGRLEWVKKIPLMAKRLEDSLYRNAASFAEYNDMNTLRARLQALASRLSHKARHHKQQA 79          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: D8LPT8_ECTSI (KIX_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT8_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.340e-23
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  130 WQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQ 369
            WQSN D   R++ILS++V YLQQRKPNARPEWI++VP  A+RLE+SLYR A +F EY D  TL  RLQQLA RLG NA+Q
Sbjct:   54 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEDSLYRNAKSFQEYKDHATLRQRLQQLAARLGTNAQQ 133          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.270e-22
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  130 WQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNARQAKLQA 384
            WQSN D   R++ILS++V YLQQRKPNARPEWI++VP  A+RLE SLYR A +F EY D  TL  RLQQLA RLG NA+Q + +A
Sbjct:  441 WQSNNDIPSRKEILSKIVTYLQQRKPNARPEWIQKVPLMAKRLEESLYRNAKSFKEYKDHATLRQRLQQLAARLGTNAQQNRAKA 525          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: K0QZC1_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZC1_THAOC)

HSP 1 Score: 87.0 bits (214), Expect = 1.730e-17
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   79 QHSAERNQQRMTH-LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLG 354
            QH    +QQR    L   WQS++D   RRK+++++V  L+QRKPNA  EW+ ++P+ A+RLE SLYR AA+F  YND+ TL ARLQQLA+ +G
Sbjct:   64 QHQVRAHQQRHPQPLNGGWQSDKDVDDRRKMIAKIVQLLRQRKPNAPAEWLNKLPQMAKRLEESLYRSAASFDAYNDISTLKARLQQLAMNIG 156          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: B7FZQ7_PHATC (Histone acetyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZQ7_PHATC)

HSP 1 Score: 86.7 bits (213), Expect = 3.100e-17
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  118 LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNAR 366
            L   WQS++D   RRK+++++V  LQQRKPNA  EW++++P+ A+RLE SLYR A +F EYND  TL  RLQQLA+ +G   +
Sbjct:   99 LNGGWQSDKDYQERRKMIAKIVHLLQQRKPNAPQEWLKKLPQMAKRLEESLYRTATSFEEYNDANTLKHRLQQLAVNIGQKTK 181          
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Match: A0A448Z166_9STRA (Histone acetyltransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z166_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.110e-17
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  118 LTSRWQSNQDRAHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEYNDMKTLHARLQQLALRLGHNAR---QAKLQA 384
            L   WQS+QD   RRK+++++V  L+ RKPNA P+W++++P+ A+RLE SLYR A +F EYND  TL  RLQQLA  +G   R   QA++QA
Sbjct:  109 LNGGWQSDQDYNERRKMIAKIVHLLKLRKPNAPPDWLKKLPQMAKRLEESLYRSAKSFEEYNDASTLKQRLQQLAHNIGMKTRKIQQAQMQA 200          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155673 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835ZBX7_9STRA1.710e-78100.00KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z250_9STRA3.580e-4076.84KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z470_9STRA6.050e-3170.24KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A835Z5N2_9STRA1.360e-2760.67KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CHH1_9STRA9.380e-2468.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPT8_ECTSI2.340e-2366.25KIX_2 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KPY4_9PHAE1.270e-2263.53Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
K0QZC1_THAOC1.730e-1751.61Histone acetyltransferase n=1 Tax=Thalassiosira oc... [more]
B7FZQ7_PHATC3.100e-1751.81Histone acetyltransferase n=1 Tax=Phaeodactylum tr... [more]
A0A448Z166_9STRA3.110e-1751.09Histone acetyltransferase n=1 Tax=Pseudo-nitzschia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:765373..765756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155673|gw1.20.289.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CNEQ@1|root,2QVQU@2759|Eukaryota
Evalue3.83e-24
Seed ortholog2880.D8LPT8
Hectar predicted targeting categoryother localisation
TranscriptId155995
TrackFilteredModels1
ProteinId155673
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155673gene_4136Tribonema minus UTEX_B_3156 geneContig_20 765373..765756 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4136_1exon_4136_1Tribonema minus UTEX_B_3156 exonContig_20 765373..765756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4136CDS_4136Tribonema minus UTEX_B_3156 CDSContig_20 765373..765756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155673Trimin1|155673|gw1.20.289.1Tribonema minus UTEX_B_3156 polypeptideContig_20 765373..765756 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4136 ID=mRNA_4136|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_20:765373..765756- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACAGACGAACGCACGCGCCGCAAAGGCCACCATCGGCGTCAGCAAGGAG
CGCTGCCGCAGAGCAGGTGGCGGCCAGGCAGCACAGCGCGGAGAGGAATC
AACAGCGCATGACGCACTTGACCAGCAGGTGGCAGTCGAACCAGGACAGG
GCGCACCGCAGGAAGATCCTGTCGCGCGTCGTCCTGTACCTGCAGCAGCG
CAAGCCAAATGCGCGCCCGGAGTGGATTAGGGAGGTGCCGCGGACGGCGC
AGCGCCTGGAGAATTCGCTGTACCGCAAAGCCGCGACTTTCGCCGAGTAC
AACGACATGAAGACGCTGCACGCGCGCCTGCAGCAGCTTGCGCTGCGCCT
CGGCCACAACGCGCGGCAGGCCAAGCTGCAGGCC
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protein sequence of jgi.p|Trimin1|155673

>Trimin1|155673|gw1.20.289.1 ID=Trimin1|155673|gw1.20.289.1|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
HRRTHAPQRPPSASARSAAAEQVAARQHSAERNQQRMTHLTSRWQSNQDR
AHRRKILSRVVLYLQQRKPNARPEWIREVPRTAQRLENSLYRKAATFAEY
NDMKTLHARLQQLALRLGHNARQAKLQA
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mRNA from alignment at Contig_20:765373..765756-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4136 ID=mRNA_4136|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_20:765373..765756- (Tribonema minus UTEX_B_3156 )
CACAGACGAACGCACGCGCCGCAAAGGCCACCATCGGCGTCAGCAAGGAG CGCTGCCGCAGAGCAGGTGGCGGCCAGGCAGCACAGCGCGGAGAGGAATC AACAGCGCATGACGCACTTGACCAGCAGGTGGCAGTCGAACCAGGACAGG GCGCACCGCAGGAAGATCCTGTCGCGCGTCGTCCTGTACCTGCAGCAGCG CAAGCCAAATGCGCGCCCGGAGTGGATTAGGGAGGTGCCGCGGACGGCGC AGCGCCTGGAGAATTCGCTGTACCGCAAAGCCGCGACTTTCGCCGAGTAC AACGACATGAAGACGCTGCACGCGCGCCTGCAGCAGCTTGCGCTGCGCCT CGGCCACAACGCGCGGCAGGCCAAGCTGCAGGCC
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Coding sequence (CDS) from alignment at Contig_20:765373..765756-

>mRNA_4136 ID=mRNA_4136|Name=jgi.p|Trimin1|155673|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_20:765373..765756- (Tribonema minus UTEX_B_3156 )
CACAGACGAACGCACGCGCCGCAAAGGCCACCATCGGCGTCAGCAAGGAG
CGCTGCCGCAGAGCAGGTGGCGGCCAGGCAGCACAGCGCGGAGAGGAATC
AACAGCGCATGACGCACTTGACCAGCAGGTGGCAGTCGAACCAGGACAGG
GCGCACCGCAGGAAGATCCTGTCGCGCGTCGTCCTGTACCTGCAGCAGCG
CAAGCCAAATGCGCGCCCGGAGTGGATTAGGGAGGTGCCGCGGACGGCGC
AGCGCCTGGAGAATTCGCTGTACCGCAAAGCCGCGACTTTCGCCGAGTAC
AACGACATGAAGACGCTGCACGCGCGCCTGCAGCAGCTTGCGCTGCGCCT
CGGCCACAACGCGCGGCAGGCCAAGCTGCAGGCC
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