mRNA_4105 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162331
Unique NamemRNA_4105
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|162331 vs. uniprot
Match: A0A835Z6Y0_9STRA (LisH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y0_9STRA)

HSP 1 Score: 199 bits (507), Expect = 9.720e-65
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    1 MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 315
            MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG
Sbjct:    1 MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 105
[Close]
BLAST of jgi.p|Trimin1|162331 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.440e-16
Identity = 53/105 (50.48%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:   22 HAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPP-AMKALVA------NRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 315
            H +   E   SLH+++  LR +FR TGV+ D+TARLRRQFV EL +   G P A +A VA       R  S + L +R L +LV D L + GLLQSLAVFLPESG
Sbjct:   39 HEQQPNEGGASLHDVKRALRDNFRATGVIDDVTARLRRQFVLELRRKGLGVPGAQEAAVAAGTCRRRRSPSGISLQERVLHSLVVDHLASNGLLQSLAVFLPESG 143
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162331 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z6Y0_9STRA9.720e-65100.00LisH domain-containing protein (Fragment) n=1 Tax=... [more]
D8LGY8_ECTSI7.440e-1650.48LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:563926..564240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162331|e_gw1.20.244.1
Max annot lvl4776|Peronosporales
EggNOG OGs2BCIU@1|root,2S109@2759|Eukaryota,3QFEN@4776|Peronosporales
Evalue4.37e-07
Seed ortholog164328.Phyra95832
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLIS1 homology motif protein
Ec32 orthologEc-14_001410.1
TranscriptId162653
TrackFilteredModels1
ProteinId162331
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162331gene_4105Tribonema minus UTEX_B_3156 geneContig_20 563926..564240 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4105_1exon_4105_1Tribonema minus UTEX_B_3156 exonContig_20 563926..564240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4105CDS_4105Tribonema minus UTEX_B_3156 CDSContig_20 563926..564240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162331Trimin1|162331|e_gw1.20.244.1Tribonema minus UTEX_B_3156 polypeptideContig_20 563926..564240 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4105 ID=mRNA_4105|Name=jgi.p|Trimin1|162331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_20:563926..564240- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGAGCTGCTCCAGCAGCACGCGGAGGGGGAGGGGGAGGATGAGCT
CTCTTTGCACGAGCTGCGGGACAGGCTCCGCACCAGCTTCAGGGAGACGG
GAGTGCTGGCGGATATCACCGCAAGGCTGCGCAGGCAGTTCGTGGCGGAG
TTGGTGCAGCACCACCATGGGCCACCCGCCATGAAGGCGCTGGTGGCAAA
CAGGCAGATCAGCGAGCTGCCGCTCACCCAGCGCCAGCTGCGCAACCTGG
TGGCAGACTTCCTGAGAGCGCAGGGCCTGCTGCAGAGCCTCGCAGTGTTC
CTGCCCGAGAGCGGC
back to top

protein sequence of jgi.p|Trimin1|162331

>Trimin1|162331|e_gw1.20.244.1 ID=Trimin1|162331|e_gw1.20.244.1|Name=jgi.p|Trimin1|162331|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAE
LVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVF
LPESG
back to top

mRNA from alignment at Contig_20:563926..564240-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4105 ID=mRNA_4105|Name=jgi.p|Trimin1|162331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=315bp|location=Sequence derived from alignment at Contig_20:563926..564240- (Tribonema minus UTEX_B_3156 )
ATGCAGGAGCTGCTCCAGCAGCACGCGGAGGGGGAGGGGGAGGATGAGCT
CTCTTTGCACGAGCTGCGGGACAGGCTCCGCACCAGCTTCAGGGAGACGG
GAGTGCTGGCGGATATCACCGCAAGGCTGCGCAGGCAGTTCGTGGCGGAG
TTGGTGCAGCACCACCATGGGCCACCCGCCATGAAGGCGCTGGTGGCAAA
CAGGCAGATCAGCGAGCTGCCGCTCACCCAGCGCCAGCTGCGCAACCTGG
TGGCAGACTTCCTGAGAGCGCAGGGCCTGCTGCAGAGCCTCGCAGTGTTC
CTGCCCGAGAGCGGC
back to top

Coding sequence (CDS) from alignment at Contig_20:563926..564240-

>mRNA_4105 ID=mRNA_4105|Name=jgi.p|Trimin1|162331|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=315bp|location=Sequence derived from alignment at Contig_20:563926..564240- (Tribonema minus UTEX_B_3156 )
ATGCAGGAGCTGCTCCAGCAGCACGCGGAGGGGGAGGGGGAGGATGAGCT
CTCTTTGCACGAGCTGCGGGACAGGCTCCGCACCAGCTTCAGGGAGACGG
GAGTGCTGGCGGATATCACCGCAAGGCTGCGCAGGCAGTTCGTGGCGGAG
TTGGTGCAGCACCACCATGGGCCACCCGCCATGAAGGCGCTGGTGGCAAA
CAGGCAGATCAGCGAGCTGCCGCTCACCCAGCGCCAGCTGCGCAACCTGG
TGGCAGACTTCCTGAGAGCGCAGGGCCTGCTGCAGAGCCTCGCAGTGTTC
CTGCCCGAGAGCGGC
back to top