Trimin1|162331|e_gw1.20.244.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|162331
Unique NameTrimin1|162331|e_gw1.20.244.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length105
Homology
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BLAST of jgi.p|Trimin1|162331 vs. uniprot
Match: A0A835Z6Y0_9STRA (LisH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y0_9STRA)

HSP 1 Score: 199 bits (507), Expect = 9.720e-65
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 
Query:    1 MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 105
            MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG
Sbjct:    1 MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 105
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BLAST of jgi.p|Trimin1|162331 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.440e-16
Identity = 53/105 (50.48%), Postives = 66/105 (62.86%), Query Frame = 0 
Query:    8 HAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAELVQHHHGPP-AMKALVA------NRQISELPLTQRQLRNLVADFLRAQGLLQSLAVFLPESG 105
            H +   E   SLH+++  LR +FR TGV+ D+TARLRRQFV EL +   G P A +A VA       R  S + L +R L +LV D L + GLLQSLAVFLPESG
Sbjct:   39 HEQQPNEGGASLHDVKRALRDNFRATGVIDDVTARLRRQFVLELRRKGLGVPGAQEAAVAAGTCRRRRSPSGISLQERVLHSLVVDHLASNGLLQSLAVFLPESG 143
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162331 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z6Y0_9STRA9.720e-65100.00LisH domain-containing protein (Fragment) n=1 Tax=... [more]
D8LGY8_ECTSI7.440e-1650.48LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006594LIS1 homology motifPFAMPF16045LisH_2coord: 83..105
e-value: 1.2E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR39063ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOGcoord: 12..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:563926..564240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162331mRNA_4105Tribonema minus UTEX_B_3156 mRNAContig_20 563926..564240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|162331|e_gw1.20.244.1 ID=Trimin1|162331|e_gw1.20.244.1|Name=jgi.p|Trimin1|162331|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=105bp
MQELLQQHAEGEGEDELSLHELRDRLRTSFRETGVLADITARLRRQFVAE
LVQHHHGPPAMKALVANRQISELPLTQRQLRNLVADFLRAQGLLQSLAVF
LPESG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH