mRNA_4102 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133750
Unique NamemRNA_4102
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A835Z233_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z233_9STRA)

HSP 1 Score: 427 bits (1098), Expect = 1.750e-149
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 1
Query:    1 REAFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLGGDDDASSDGESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSGIGPSGFSFGAPVSAAAGFSFG 807
            REAFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLGGDDDASSDGESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSGIGPSGFSFGAPVSAAAGFSFG
Sbjct:    1 REAFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLGGDDDASSDGESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSGIGPSGFSFGAPVSAAAGFSFG 269          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A835Z9Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q0_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.810e-43
Identity = 142/186 (76.34%), Postives = 148/186 (79.57%), Query Frame = 1
Query:  235 EAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGA---GFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSG----IGPSGFSFG 771
            EAE   ERAKVR AFAAL++     SIAAAQF ELFE LGTTYNEEAHTKTL RLQDG+GRVP DAF++WY+EWLLG  XXXXXXXXXXXXXXXXXXXXXXXXXX     GFGDMFKA AGEWKCEACLVRN P A KC SCETP  G  A AXX XXXXXXXXXXXXXXX      IGPSGF FG
Sbjct:  127 EAEXXXERAKVRGAFAALNEGXXXXSIAAAQFAELFEALGTTYNEEAHTKTLRRLQDGAGRVPLDAFLDWYIEWLLGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQGFGDMFKAVAGEWKCEACLVRNPPTAVKCVSCETPGPGAAAEAXXXXXXXXXXXXXXXXXXXXXXXXIGPSGFHFG 312          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A835ZBV9_9STRA (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV9_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.480e-38
Identity = 111/142 (78.17%), Postives = 115/142 (80.99%), Query Frame = 1
Query:  349 LGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSG--IGPSGFSF 768
            LGTTYNEEAHTKTL RLQD +GRV  DAF +WYVEWLLGGD       XXXXXXXXXXXXXXXXXX GAGFGDMFKAAAGEWKC+ACLVRNAPGA KCASCETPAAG  A  XX XXXXXXXXXX     +G  I PSGFSF
Sbjct:    1 LGTTYNEEAHTKTLQRLQDAAGRVHLDAFTDWYVEWLLGGDDEASSDGXXXXXXXXXXXXXXXXXX-GAGFGDMFKAAAGEWKCDACLVRNAPGATKCASCETPAAGAVAXXXXXXXXXXXXXXXGHASTAGGSISPSGFSF 141          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A7S4E7X3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7X3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.560e-31
Identity = 116/259 (44.79%), Postives = 151/259 (58.30%), Query Frame = 1
Query:    1 REAFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLGGDDDASSDGESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLG-GDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSGIGPSGFSFGA 774
            R AF+ +D A  GS +   RF +L + +G  ++ +       ++ DG G++ R+AF  +YV  +   D   +SD   +E EREEER   REAF  + D  +   + +++F  L E LGTTY EE H +TL +L  G G V RDAF+EWYV+W+LG GD  XXXXXXXXXXX              A +  +  A  G WKCE C VRN   A+KCA+CETP           XXXXXXXXXXXXXXX  +GP GFSFG+
Sbjct:   49 RSAFDDVDAATSGS-LPVDRFEDLLDAVGEGFHGDELEAQRAKVDDGSGKITREAFARYYVALVENAD---ASDDSGDEEEREEERGNAREAFDTVADGKT--EVPSSKFQALMEALGTTYCEEEHRRTLRKLAPG-GTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAA------ATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETP--------NPAXXXXXXXXXXXXXXXXSVGPGGFSFGS 286          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A662XY18_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY18_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.210e-30
Identity = 100/249 (40.16%), Postives = 124/249 (49.80%), Query Frame = 1
Query:   16 ALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLGGDDD----------------------------ASSDGES--EEAEREEERAKVREAFAALDDATSGSS-IAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLG---GDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETP 660
            A DDA     I    FP LF+ LG+TY+EEAH KTL+RL   G    RD F+ WYV++L   D+                             A SDG+   ++AER+EE  KVR+AF ++  AT G+  I    FP+LF+ LG TY+EEAH  TL +L  G G+V    F+ WYV+WL G    DXXXXXXX                    A     F    G WKC  C+V N P A KC SCETP
Sbjct:  614 ASDDA---DYIDVKHFPRLFKALGSTYSEEAHAKTLERLDKDGKVYERD-FIPWYVDYLFNDDESDEDEEASKSAAPKKQVSHAYGQNDENQFAESDGDETDDDAERKEEEDKVRKAFRSI--ATDGADYIEVEHFPKLFKTLGATYSEEAHVNTLQKLDKG-GKVYERDFISWYVDWLFGDGDSDXXXXXXXDSAATTGTKKTDMKSKEEIAAAL-SKFMPKEGSWKCAVCMVSNGPDATKCTSCETP 854          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A8J2SJ63_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ63_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.660e-30
Identity = 116/259 (44.79%), Postives = 151/259 (58.30%), Query Frame = 1
Query:    1 REAFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLGGDDDASSDGESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLG-GDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSGIGPSGFSFGA 774
            R AF+ +D A  GS +   RF +L + +G  ++ +       ++ DG G++ R+AF  +YV  +   D   +SD   +E EREEER   REAF  + D  +   + +++F  L E LGTTY EE H +TL +L  G G V RDAF+EWYV+W+LG GD  XXXXXXXXXXX              A +  +  A  G WKCE C VRN   A+KCA+CETP           XXXXXXXXXXXXXXX  +GP GFSFG+
Sbjct:  889 RSAFDDVDAATSGS-LPVDRFEDLLDAVGEGFHGDELEAQRAKVDDGSGKITREAFARYYVALVENAD---ASDDSGDEEEREEERGNAREAFDTVADGKT--EVPSSKFQALMEALGTTYCEEEHRRTLRKLAPG-GTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAA------ATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETP--------NPAXXXXXXXXXXXXXXXXSVGPGGFSFGS 1126          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A1Z5KBE2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBE2_FISSO)

HSP 1 Score: 122 bits (306), Expect = 9.000e-28
Identity = 81/227 (35.68%), Postives = 113/227 (49.78%), Query Frame = 1
Query:    4 EAFEALDDAGGGSSIAAARFPELFEQLGTT-YNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLGGDDDASSDGESEEAEREE-ERAKVREAFAALDDATSG-SSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAGGK 675
            EAF+ +D    G  +   +  +L E LG   Y +E   +T    +D  G + R AF++WYV+ L GGDD           +REE ERA+ +  F  L    +G  SI+   FP+L E LGTTY EE H +T+ +L+D SG +  +AF+ WY++WL GGD                          G G+G++FKA  G WKC  C+V N     KC +CE    G K
Sbjct:  690 EAFDTIDSDKKGI-LPLNKMEDLIENLGEGFYGDELAKQTKLVDKDDKGHLERQAFIDWYVQLLSGGDDXXXXXXXXXXXQREERERAQAK--FQELSSIRNGVRSISEMDFPKLIESLGTTYCEEEHRRTIRKLKDSSGIITENAFVSWYIDWLFGGDESDVEDSEEEEDEVDGVVTNELVAT-GTGWGNIFKAEEGSWKCSVCMVLNPGETGKCKACEAVRPGTK 912          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A7S3ZVY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVY8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.500e-26
Identity = 100/261 (38.31%), Postives = 134/261 (51.34%), Query Frame = 1
Query:    1 REAFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGRVPRDAFMEWYVEWLLG-GDDDASSDGESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLG-GDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETP--AAGGKAAAXXGXXXXXXXXXXXXXXXSGIGPSGFSFG 771
            R AF+ +D +G    +   RF +L + +G  ++ +       ++ DG GR+ R+AF  +YV      G+DD+           +      REAF  + D    +S+ +++F  L E LGTTY EE H +TL +L  G G V RDAF+EWYV+W+LG GD  XXXXXXXXXXX              A +  +  A  G WKCE C VRN   A+KCA+CETP  AA  KAAA                    +GP GFSFG
Sbjct:   49 RSAFDEVDSSG---VVPVDRFEDLLDSVGEGFHGDELEAQRAKVDDGSGRITREAFARYYVALCANVGEDDSDXXXXXXXXXSQ----SAREAFDTVAD--GATSVPSSKFQALMEALGTTYCEEEHRRTLRKLAPG-GTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAA------ATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETPNPAAPQKAAASGNAVSAP----------GSVGPGGFSFG 283          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A7S2L9X9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L9X9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.520e-26
Identity = 107/240 (44.58%), Postives = 140/240 (58.33%), Query Frame = 1
Query:    7 AFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQ-DGGGRVPRDAFMEWYVEWLLGGDDDASSDG--------ESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLG-GDXXXXXXXXXXXXXXXXXXXXXXXXXXGA---------GFGDMFKAAAGEWKCEACLVRNAPGAAKCASCETPAAG 669
            AF+ +D  G G  +A++ F  L E LG  +  +   K L  +  +  G + R +F+ WYV  + G +DD   DG          E AER EE  K+  AFA L+D  +  SI  A F +L E +GT Y EEAH +T+ +L D SG + +DAF  WY++WL G GD XXXXXXXXXXXXXXXXXXXXXXXXX            +G +F   AG WKC++C+V+N P  A C +CETP  G
Sbjct:  221 AFDDIDTDGKGE-VASSLFGLLLESLGEGFYGDELDKQLSLVDPESTGIICRSSFIGWYVHLVEGCEDDEGKDGVDDSSSLDTDERAERAEELEKISVAFAELNDGKNVQSIKTADFGQLMEAMGTAYCEEAHRRTVKKL-DNSGIITQDAFTGWYIDWLFGDGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWGGIFATEAGSWKCDSCMVKNKPDVADCVACETPRPG 458          
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Match: A0A7S4HSE8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSE8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.010e-23
Identity = 70/196 (35.71%), Postives = 97/196 (49.49%), Query Frame = 1
Query:  214 SSDGESEEAEREEERAKVREAFAALDDATSGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYVEWLLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXGAGFGDMFKAAAGE---WKCEACLVRNAPGAAKCASCETPAAGGKAAAXXGXXXXXXXXXXXXXXXSGIGPSGFSFGAPVSAAA 792
            ++D E  E E+ EER K  EAFA++  ++ G +I    FP+L E +GTTY EE H +TL +L    G+V +D F+EWY++WL G +                            G+GD FK+  G+   WKC+ C+VRN P   KCA+CE    G +  A                    IG  GF+FGAP +AAA
Sbjct:  749 TADREEMEEEKAEEREKALEAFASM--SSDGEAIPKEDFPKLIEGMGTTYCEEEHRRTLRKLAGPDGKVRKDEFVEWYLDWLFGDEDEDEEYSDKEDEEEPGEGTREGSVASNKGWGDAFKSTEGKEGSWKCDVCMVRNDPDLVKCAACEMVRPGHEEEANA------KEGGGAGAAAGAIGAGGFTFGAPPAAAA 936          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133750 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A835Z233_9STRA1.750e-149100.00RanBP2-type domain-containing protein (Fragment) n... [more]
A0A835Z9Q0_9STRA1.810e-4376.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBV9_9STRA2.480e-3878.17RanBP2-type domain-containing protein (Fragment) n... [more]
A0A7S4E7X3_9STRA1.560e-3144.79Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A662XY18_9STRA4.210e-3040.16Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A8J2SJ63_9STRA7.660e-3044.79Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A1Z5KBE2_FISSO9.000e-2835.68Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3ZVY8_9STRA1.500e-2638.31Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S2L9X9_9STRA2.520e-2644.58Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4HSE8_9STRA3.010e-2335.71Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:542342..546298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133750|gw1.20.58.1
Max annot lvl2836|Bacillariophyta
EggNOG OGs2DARA@1|root,2S5GD@2759|Eukaryota,2XGHJ@2836|Bacillariophyta
Evalue1.45e-27
Seed ortholog2850.Phatr43752
Hectar predicted targeting categoryother localisation
TranscriptId134072
TrackFilteredModels1
ProteinId133750
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133750gene_4102Tribonema minus UTEX_B_3156 geneContig_20 542342..546298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133750Trimin1|133750|gw1.20.58.1Tribonema minus UTEX_B_3156 polypeptideContig_20 542342..546298 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4102_2exon_4102_2Tribonema minus UTEX_B_3156 exonContig_20 542342..542914 -
exon_4102_1exon_4102_1Tribonema minus UTEX_B_3156 exonContig_20 546065..546298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4102CDS_4102Tribonema minus UTEX_B_3156 CDSContig_20 546065..546298 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4102 ID=mRNA_4102|Name=jgi.p|Trimin1|133750|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=807bp|location=Sequence derived from alignment at Contig_20:542342..546298- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGAGGCATTCGAGGCTTTGGACGATGCCGGCGGCGGCAGCAGCATCGC
AGCGGCGCGGTTCCCGGAGCTGTTCGAGCAGCTGGGCACCACGTACAACG
AGGAGGCGCACACCAAGACGCTGCAACGGCTGCAGGACGGCGGCGGCAGG
GTGCCGCGCGACGCCTTCATGGAGTGGTACGTGGAATGGCTACTCGGCGG
CGACGACGACGCGAGCAGCGATGGCGAGAGCGAGGAGGCGGAGCGGGAGG
AGGAGAGGGCCAAGGTCAGAGAGGCGTTTGCCGCGCTGGACGATGCCACA
AGCGGCAGCAGCATCGCGGCGGCGCAGTTTCCGGAGCTGTTTGAGCAGCT
GGGCACCACGTACAATGAGGAGGCGCATACCAAGACGCTGCTGCGGCTGC
AGGACGGCAGCGGCAGGGTGCCGCGCGATGCGTTTATGGAGTGGTACGTG
GAGTGGCTGCTCGGCGGCGACGACGACGCCAGCAGCGATGGCGGCAGCAC
GACTGCAGGCGACACCGGCGGCAGCAGCGGCGGCGCTGCAGCCGCGGCGG
GAGCAGGGTTTGGGGACATGTTCAAAGCGGCGGCGGGGGAGTGGAAGTGC
GAGGCGTGCCTCGTGCGCAACGCACCGGGCGCTGCCAAGTGCGCTTCGTG
TGAGACGCCAGCTGCGGGGGGTAAGGCTGCAGCAGCGGCAGGGGCAGCGT
CAGGGGCAGGGGCTGCCAGGACTGCATCTGCAGCAGGAAGTGGAATCGGT
CCATCCGGGTTCAGCTTTGGCGCTCCGGTTTCGGCGGCAGCCGGGTTCAG
CTTTGGT
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protein sequence of jgi.p|Trimin1|133750

>Trimin1|133750|gw1.20.58.1 ID=Trimin1|133750|gw1.20.58.1|Name=jgi.p|Trimin1|133750|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=269bp
REAFEALDDAGGGSSIAAARFPELFEQLGTTYNEEAHTKTLQRLQDGGGR
VPRDAFMEWYVEWLLGGDDDASSDGESEEAEREEERAKVREAFAALDDAT
SGSSIAAAQFPELFEQLGTTYNEEAHTKTLLRLQDGSGRVPRDAFMEWYV
EWLLGGDDDASSDGGSTTAGDTGGSSGGAAAAAGAGFGDMFKAAAGEWKC
EACLVRNAPGAAKCASCETPAAGGKAAAAAGAASGAGAARTASAAGSGIG
PSGFSFGAPVSAAAGFSFG
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mRNA from alignment at Contig_20:542342..546298-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4102 ID=mRNA_4102|Name=jgi.p|Trimin1|133750|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3957bp|location=Sequence derived from alignment at Contig_20:542342..546298- (Tribonema minus UTEX_B_3156 )
AGGGAGGCATTCGAGGCTTTGGACGATGCCGGCGGCGGCAGCAGCATCGC AGCGGCGCGGTTCCCGGAGCTGTTCGAGCAGCTGGGCACCACGTACAACG AGGAGGCGCACACCAAGACGCTGCAACGGCTGCAGGACGGCGGCGGCAGG GTGCCGCGCGACGCCTTCATGGAGTGGTACGTGGAATGGCTACTCGGCGG CGACGACGACGCGAGCAGCGATGGCGAGAGCGAGGTCGGCAGCGGCGGTG GCGGTGGCGGCGGCGGCAGCGCGGCTGCAGCGGGAGCAGGGTTTGGGGAC ATGTTCAAAGCGGCGGCGGGGGAGTGGAAGTGCGGGGTGTGCCTCGTGCG CAACGCGCCGGGCGCTGCCAAGTGTGCTTCGTGTGAGACGCTTGCGCCAG GGGCTGAGGCTGCACCTGCGGCAGGGGAGGGTGCGCGGCCAGCAGATGCT GCTGCAGCTGCAGGGAGCATAGGCCCGTCGGGTTTCAGCTTTGGCGCGCC GGCGGCGCCTGCTGCGGCAGGTGGGACTGTCGGTAGTTTGCATGTTTGCT TAGCATTGATGGTGATCGCATGAATGTGATTGGGTGAATTTGGGGGGTGG GACTAGGGTATACAGTTCACTGTGGTATGTAACGGTGCCTTGGTCTTCTT TGCCTGTGTGTAGATGGGTTCAAGAGCAAGCAGCGCAGCGGCACAAGCGG CCGCGATGGCCTTGGCAGTTGCATTGATCGCAGCGCGGGCATGCGCGCTT ACATGGAGACTGTCGCCTTTGAGCAACGTGGCTGTCAAGCATGGTCATGG TAAAGCGTTCATCTGTAACAGAGTGCTCTGCACAAGAGTCCATTGCGAAG GCATTGATGGCATGGTGAACTTCAATAACATGCAGAATGCAACTGCGGTT ATATGGCAGAGCACTGTCTTCAATCCTGGTGGGGGAATGCATCAGTAAAT GGGAGTATTTAGTGTTGAAAGCCCTAAACTATACAATGATACATCAGATG CAGACACTTTGACCGCCTGGGTGTGAGTCAGCAGCACCCTATTTTAAAAT CCGTGCATCCTAATGGTATGCCATCTATTGCAATAGGTATCGTCGCATCA AACAGAAAAGCTACCTGTGTGTACAACTTGCAGCATCACTAAATGGCGGC AGCGCTCATCTACATTTTTGTTACATGCGTCCTGTCAGTACAGTGATTTC ATCACTGCGGTGAAGTGCATTTCCAGCGCGAGGACTTGCGCACGCGCGGC GCTCACGCTGCCAAGTTCAACTTCAATCTTGAAGCTACGCACAAGCGCGC GCGCTGCTTTCTCGATGCCGCACTCAATGTGCGCTTTGACTGCTGCTTTG CAGGTACCTCCGCGGCATCCGGCAACCGCGGCTTCTCATTTGGTGCAGCG ATGAGCACTGCGGCAGCGAGCAGCAGCCCCGGAGCGCAGGCAGCCACGCA GCAGCCCGCAGTACAGGGCGGGTTCACTTTTGCTCCGCAGAAGGCTGCTG CGCGCGGAGGCTTCTTCTTCGGCGCAGCGGCTGCGGCGGCGGACGGCAGC ACCGCCGCCGGCAGTGGCACTGCCGCCAACGGCGGCGACAGCGGCAGCGG CAGCGGCGGCGGCGGGCCGGATATTACGGAAGAGTTTTCCCCTGAGGCCG ATGACGGCGGCTCTGACGATGAGGAGGCAGAGCGGGAGGAGGAGAGGGCC AAAGTCAGGGAGGCATTTGCAGCGCTGGACGATGCCACGGGCGGTAGCAG CATCGCGGCGGCGCGGTTCCCGGAGCTGTTTGAGCAGCTGGGCACCACGT ACAATGAGGAGGCGCATACCAAGACGCTGCTGCAGCTGCAGGACGGCGGC GGCAGGGTGCCGCGCGACGCCTTCATGGAGTGGTACGTGGAATGGCTACT CGGCGGCGACGACGACGCGAGCAGCGATGGCGAGAGCGAGGTCGGCAGCG GCGGTGGCGGTGGCGGTGGCGGCGGCGGCAGCGCGGCCGCAGCGGGAGCA GGGTTTGGGGACATGTTCAAAGCGGCAGCGGGGGAGTGGAAGTGTGGGGC GTGCCTCGTGCGCAACGCGCCGGGCGCTGCCAAGTGTGCTTCGTGTGAGA CGCTTGCGCCAGGGGCTGAGGCTGCAACTGCGGCAGGGGAGGGTGCGCGG CCAGCAGATGCTGCTGCAGCTGCAGGGAGCATAGGCCCGTCGGGATTCAG CTTCGGCGCGCCGGCGGCGCCTGCTGCGGCAGGTGGGACTGTCGGTAGTT TGCATGTTTGCTTAGCATTGATGGTGATCGCATGAATGTGATTGGGTGAA TTTTGGGGGGTGGGACTAGTACATACAGCCCACTGTGGTATGTAACGGTG CCTTGGTCTTCTTTGCCTGTGTGTAGATGGGTTCAAGAGCAAGCAGCGCA GCGGCACAAGCGGCCACGATGGCCTTGACAGTTGCATTGATCGCAGCGCG GGCATGCGCGCTTACATGGAGACTGTCGCCTTTGAGCAACGTGGCTGTCA CCAGCATGGTCATGGTAAAGCGTTGATCTGTAACAGAGTGCTCTGCACAA GAGTCCATTGCGAAGGCATTGATGGCATGGTGAACTTCAATAACATTGCG GCATGCAACTGCGGTTATATGGTTGAGCCCTGTCTTCAATCCTGGTGGGG GAATGCACCAGTAAATGGGAGTATACAGTGTTGAAAGCCCTAAACTACAC GATGATATATCAGATGCAGACACTTTGACCGCCTGGGTGTGAGTCAGCAG CACCCTAATTCAAAATCCGTGCATCCTGATGGTCTGCCACCTATTGCAAT AGGTATTGTCGCATCAAACAGAAAAGCTACGCTGTGTGTACAACATGCAG CATCACTAAATGGCGGCAGCGCTCATCTACATTTTTGTTACATGCGTCCT GTCAGTACAGTGATTTCGTCACCGCGGTGAAGTGCATCTCCAGCGCGAGG ACTTGCGCACGCGCGGCGCTCACGCTGCCAAGTTCAACTTCAATGTTGAA GCTACGCACAAGCGCGCGCGCTGCTTTCTCGATGCCGCACTCAATGTGCG CTTTGACTGCTGCCTTGCAGGTACCTCCGCGGCATCCGGCAACCGCGGCT TCTCATTTGGTGCAGCGATGAGCACTGCGGCAGCGAGCAACAGCCCCGGA GCGCAGGCAGCCACGCAGCAGCCCGCAGTACAGGGCGGGTTAACTTTTGC TCCGCAGCAGGCTGCCGCGCGCGGAGGCTTCTCCTTCGGCGCAGCGGCTT CAGCGGCGGACGGCAGCGCCGCCGCTGGCAGTGGCACTACAGCCAGCGGC GGCGACGGCGGCGCTGGCAGCGGTGGGCTGGACGTTACGGAAGAGTTCTC TCCTGAAGCCGATGACGGCGGCTCTGACGACGAGGAGGCGGAGCGGGAGG AGGAGAGGGCCAAGGTCAGAGAGGCGTTTGCCGCGCTGGACGATGCCACA AGCGGCAGCAGCATCGCGGCGGCGCAGTTTCCGGAGCTGTTTGAGCAGCT GGGCACCACGTACAATGAGGAGGCGCATACCAAGACGCTGCTGCGGCTGC AGGACGGCAGCGGCAGGGTGCCGCGCGATGCGTTTATGGAGTGGTACGTG GAGTGGCTGCTCGGCGGCGACGACGACGCCAGCAGCGATGGCGGCAGCAC GACTGCAGGCGACACCGGCGGCAGCAGCGGCGGCGCTGCAGCCGCGGCGG GAGCAGGGTTTGGGGACATGTTCAAAGCGGCGGCGGGGGAGTGGAAGTGC GAGGCGTGCCTCGTGCGCAACGCACCGGGCGCTGCCAAGTGCGCTTCGTG TGAGACGCCAGCTGCGGGGGGTAAGGCTGCAGCAGCGGCAGGGGCAGCGT CAGGGGCAGGGGCTGCCAGGACTGCATCTGCAGCAGGAAGTGGAATCGGT CCATCCGGGTTCAGCTTTGGCGCTCCGGTTTCGGCGGCAGCCGGGTTCAG CTTTGGT
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Coding sequence (CDS) from alignment at Contig_20:542342..546298-

>mRNA_4102 ID=mRNA_4102|Name=jgi.p|Trimin1|133750|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=807bp|location=Sequence derived from alignment at Contig_20:542342..546298- (Tribonema minus UTEX_B_3156 )
AGGGAGGCATTCGAGGCTTTGGACGATGCCGGCGGCGGCAGCAGCATCGC
AGCGGCGCGGTTCCCGGAGCTGTTCGAGCAGCTGGGCACCACGTACAACG
AGGAGGCGCACACCAAGACGCTGCAACGGCTGCAGGACGGCGGCGGCAGG
GTGCCGCGCGACGCCTTCATGGAGTGGTACGTGGAATGGCTACTCGGCGG
CGACGACGACGCGAGCAGCGATGGCGAGAGCGAGGAGGCGGAGCGGGAGG
AGGAGAGGGCCAAGGTCAGAGAGGCGTTTGCCGCGCTGGACGATGCCACA
AGCGGCAGCAGCATCGCGGCGGCGCAGTTTCCGGAGCTGTTTGAGCAGCT
GGGCACCACGTACAATGAGGAGGCGCATACCAAGACGCTGCTGCGGCTGC
AGGACGGCAGCGGCAGGGTGCCGCGCGATGCGTTTATGGAGTGGTACGTG
GAGTGGCTGCTCGGCGGCGACGACGACGCCAGCAGCGATGGCGGCAGCAC
GACTGCAGGCGACACCGGCGGCAGCAGCGGCGGCGCTGCAGCCGCGGCGG
GAGCAGGGTTTGGGGACATGTTCAAAGCGGCGGCGGGGGAGTGGAAGTGC
GAGGCGTGCCTCGTGCGCAACGCACCGGGCGCTGCCAAGTGCGCTTCGTG
TGAGACGCCAGCTGCGGGGGGTAAGGCTGCAGCAGCGGCAGGGGCAGCGT
CAGGGGCAGGGGCTGCCAGGACTGCATCTGCAGCAGGAAGTGGAATCGGT
CCATCCGGGTTCAGCTTTGGCGCTCCGGTTTCGGCGGCAGCCGGGTTCAG
CTTTGGT
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