mRNA_408 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|54894
Unique NamemRNA_408
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A835ZIS8_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS8_9STRA)

HSP 1 Score: 638 bits (1645), Expect = 1.060e-230
Identity = 314/321 (97.82%), Postives = 315/321 (98.13%), Query Frame = 1 
Query:    1 LVWWVGWAAGLAGASTSGPQVMPACVAPSSSRELQTCGGVSEALAGVRRRDRQRLGVLGEQAESAAHHGTNHKLLAAVNGNILSGLQPAVSRDLAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASGWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVALRRVCLWVESLVALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE 963
            LVWWVGWAAGLAGASTSGPQVMPACVAPS  RELQTCGGVSEALAGVRRRDR+RLGVLGEQAESAA HGTNHKLLAAVNGNILSGLQPAVSRDLAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPAS WGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVALRRVCLW ESL ALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE
Sbjct:    3 LVWWVGWAAGLAGASTSGPQVMPACVAPS--RELQTCGGVSEALAGVRRRDRERLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPAVSRDLAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE 321
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A835Z453_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z453_9STRA)

HSP 1 Score: 251 bits (641), Expect = 1.240e-80
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = -1 
Query:  391 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPSTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY 774
            MQAKVTIMGP+LEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPP TSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY
Sbjct:    1 MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY 128
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A836C6W3_9STRA (Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W3_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.500e-78
Identity = 134/140 (95.71%), Postives = 135/140 (96.43%), Query Frame = -1 
Query:  355 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPSTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYVNPDIIEISRGS 774
            MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMS TVVHR   ITPNKASASDCPP TSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYVNPDIIEISRG+
Sbjct:    1 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSRTVVHRPPPITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYVNPDIIEISRGT 140
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A836CMW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW0_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.580e-41
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 LVWWVGWAAGLAGASTSGPQVMPACVAPSSSRELQTCGGVSEALAGVRRRDRQRLGVLGEQAESAAHHGTNHKLLAAVNGNILSGLQPA 267
            LVWWVGWAAGLAGASTSGPQVMPACVAPS  RELQTCGGVSEALAGVRRRDRQRLGVLGEQAESAA HGTNHKLLAAVNGNILSGLQPA
Sbjct:    3 LVWWVGWAAGLAGASTSGPQVMPACVAPS--RELQTCGGVSEALAGVRRRDRQRLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPA 89
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A835ZCT2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT2_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.510e-37
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = -1 
Query:  817 LYFYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSYKTLHPQTDPS 1032
            LYFYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQS KTL PQTDPS
Sbjct:  280 LYFYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS 351
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A835ZBP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.030e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 2 
Query:   89 VRENFKRVVVSRKPWLACGGGTGSGLACLESKRSRLHTTAPTTSYSQR 232
            +RENFKRVVVSRKPWLACGGGTGSGLACLESKRSRLH TAPTTSYSQR
Sbjct:  181 LRENFKRVVVSRKPWLACGGGTGSGLACLESKRSRLHATAPTTSYSQR 228
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A835ZJ73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ73_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.710e-7
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = -1 
Query:  613 MQAKVTIMGPELEIVAIYVNPDIIKISRG-SHWAPGADARKKGYITKQSIASLMS 774
            MQAKVTIMGPELEIVAI+VNPDII+ISRG S  + G   RK         AS MS
Sbjct:    1 MQAKVTIMGPELEIVAIFVNPDIIEISRGRSFGSIGEQGRKLLEAVATEYASRMS 55
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BLAST of jgi.p|Trimin1|54894 vs. uniprot
Match: A0A835Z7U0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.150e-6
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:  358 MQAKVTMMGPELEIVAIYVNPDIIEISRG 444
            MQAKVT+MGPELEIVAIYVNPDIIEISRG
Sbjct:    1 MQAKVTIMGPELEIVAIYVNPDIIEISRG 29
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|54894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZIS8_9STRA1.060e-23097.82Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z453_9STRA1.240e-8098.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C6W3_9STRA1.500e-7895.71Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A836CMW0_9STRA1.580e-4196.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCT2_9STRA1.510e-3797.22Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZBP5_9STRA2.030e-2195.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZJ73_9STRA2.710e-763.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7U0_9STRA6.150e-696.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1325941..1326972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|54894|CE54893_112
Hectar predicted targeting categoryother localisation
TranscriptId55216
TrackFilteredModels1
ProteinId54894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54894gene_408Tribonema minus UTEX_B_3156 geneContig_3 1325941..1326972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_408_1exon_408_1Tribonema minus UTEX_B_3156 exonContig_3 1325941..1326972 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_408UTR3_408Tribonema minus UTEX_B_3156 three_prime_UTRContig_3 1325941..1326006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_408CDS_408Tribonema minus UTEX_B_3156 CDSContig_3 1326007..1326909 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_408UTR5_408Tribonema minus UTEX_B_3156 five_prime_UTRContig_3 1326910..1326972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|54894Trimin1|54894|CE54893_112Tribonema minus UTEX_B_3156 polypeptideContig_3 1326007..1326909 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_408 ID=mRNA_408|Name=jgi.p|Trimin1|54894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1032bp|location=Sequence derived from alignment at Contig_3:1325941..1326972- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGTTTGGTGGGTGGGCTGGGCTGCAGGGCTTGCAGGAGCTAGCACCAG
CGGCCCTCAGGTGATGCCAGCGTGCGTAGCCCCTTCAAGTTCGAGAGAAC
TTCAAACGTGTGGTGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGAGGAGG
GACAGGCAGCGGCTTGGCGTGCTTGGAGAGCAAGCGGAGTCGGCTGCACA
CCACGGCACCAACCACAAGTTACTCGCAGCGGTAAATGGCAATATCTTGT
CAGGCTTGCAGCCTGCGGTGAGCCGTGACCTCGCTCATCAAGGAGGCGAT
GCTTTACTTAGTTATATAGCCTTTCTCTCTAGCGTCAGCGCCTGGCGCCC
AGTGACTCCCTCTGCTTATCTCTATGATATCGGGGTTCACGTAGATAGCC
ACAATCTCCAGTTCAGGGCCCATCATGGTGACCTTGGCCTGCATGAAAAC
TTTGAGATGGAGTCTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTCTGTCT
GTGGGGGGAGAGTCTTGCAGCTTTGTTTGGTATCCCTGCTAGTGGATGGG
GGACAGTCGCTTGCGGATGCTTTGTTGGGGGTGATATGGGAGGCCCGGTG
AACCACCGTCCCGCTCATCAAGGAGGCGATGCTTTGCTTAGTTATATAGC
CTTTCTTTCTAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCTGCTTATC
TTTATGATATCGGGGTTCACGTAGATAGCCACAATCTCCAGTTCAGGGCC
CATTATGGTGACCTTGGCCTGCATGAAAACTTTGAGATGGAGTCTGCGTG
GAGCTGGGTGGCCCTAAGACGGGTCTGTCTGTGGGTGGAGAGTCTTGTAG
CTTTGTTTGGTATCCCTGCTAGTATGTGGGGGACAGTCGCTTGCGGGTGC
TTTGTTGGGGGTGATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTGCATG
CTACATCCAAGAGTGAGAACAAGGCGACACACCTACAACATGGCATTTCC
ACAGCCACGAGTGGAATATAATAAAAGTACAA
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protein sequence of jgi.p|Trimin1|54894

>Trimin1|54894|CE54893_112 ID=Trimin1|54894|CE54893_112|Name=jgi.p|Trimin1|54894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=301bp
MPACVAPSSSRELQTCGGVSEALAGVRRRDRQRLGVLGEQAESAAHHGTN
HKLLAAVNGNILSGLQPAVSRDLAHQGGDALLSYIAFLSSVSAWRPVTPS
AYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGES
LAALFGIPASGWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSS
VSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVA
LRRVCLWVESLVALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE
*
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mRNA from alignment at Contig_3:1325941..1326972-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_408 ID=mRNA_408|Name=jgi.p|Trimin1|54894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1032bp|location=Sequence derived from alignment at Contig_3:1325941..1326972- (Tribonema minus UTEX_B_3156 )
CTGGTTTGGTGGGTGGGCTGGGCTGCAGGGCTTGCAGGAGCTAGCACCAG
CGGCCCTCAGGTGATGCCAGCGTGCGTAGCCCCTTCAAGTTCGAGAGAAC
TTCAAACGTGTGGTGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGAGGAGG
GACAGGCAGCGGCTTGGCGTGCTTGGAGAGCAAGCGGAGTCGGCTGCACA
CCACGGCACCAACCACAAGTTACTCGCAGCGGTAAATGGCAATATCTTGT
CAGGCTTGCAGCCTGCGGTGAGCCGTGACCTCGCTCATCAAGGAGGCGAT
GCTTTACTTAGTTATATAGCCTTTCTCTCTAGCGTCAGCGCCTGGCGCCC
AGTGACTCCCTCTGCTTATCTCTATGATATCGGGGTTCACGTAGATAGCC
ACAATCTCCAGTTCAGGGCCCATCATGGTGACCTTGGCCTGCATGAAAAC
TTTGAGATGGAGTCTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTCTGTCT
GTGGGGGGAGAGTCTTGCAGCTTTGTTTGGTATCCCTGCTAGTGGATGGG
GGACAGTCGCTTGCGGATGCTTTGTTGGGGGTGATATGGGAGGCCCGGTG
AACCACCGTCCCGCTCATCAAGGAGGCGATGCTTTGCTTAGTTATATAGC
CTTTCTTTCTAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCTGCTTATC
TTTATGATATCGGGGTTCACGTAGATAGCCACAATCTCCAGTTCAGGGCC
CATTATGGTGACCTTGGCCTGCATGAAAACTTTGAGATGGAGTCTGCGTG
GAGCTGGGTGGCCCTAAGACGGGTCTGTCTGTGGGTGGAGAGTCTTGTAG
CTTTGTTTGGTATCCCTGCTAGTATGTGGGGGACAGTCGCTTGCGGGTGC
TTTGTTGGGGGTGATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTGCATG
CTACATCCAAGAGTGAGAACAAGGCGACACACCTACAACATGGCATTTCC
ACAGCCACGAGTGGAATATAATAAAAGTACAA
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Coding sequence (CDS) from alignment at Contig_3:1325941..1326972-

>mRNA_408 ID=mRNA_408|Name=jgi.p|Trimin1|54894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=903bp|location=Sequence derived from alignment at Contig_3:1325941..1326972- (Tribonema minus UTEX_B_3156 )
ATGCCAGCGTGCGTAGCCCCTTCAAGTTCGAGAGAACTTCAAACGTGTGG
TGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGAGGAGGGACAGGCAGCGGC
TTGGCGTGCTTGGAGAGCAAGCGGAGTCGGCTGCACACCACGGCACCAAC
CACAAGTTACTCGCAGCGGTAAATGGCAATATCTTGTCAGGCTTGCAGCC
TGCGGTGAGCCGTGACCTCGCTCATCAAGGAGGCGATGCTTTACTTAGTT
ATATAGCCTTTCTCTCTAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCT
GCTTATCTCTATGATATCGGGGTTCACGTAGATAGCCACAATCTCCAGTT
CAGGGCCCATCATGGTGACCTTGGCCTGCATGAAAACTTTGAGATGGAGT
CTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTCTGTCTGTGGGGGGAGAGT
CTTGCAGCTTTGTTTGGTATCCCTGCTAGTGGATGGGGGACAGTCGCTTG
CGGATGCTTTGTTGGGGGTGATATGGGAGGCCCGGTGAACCACCGTCCCG
CTCATCAAGGAGGCGATGCTTTGCTTAGTTATATAGCCTTTCTTTCTAGC
GTCAGCGCCTGGCGCCCAGTGACTCCCTCTGCTTATCTTTATGATATCGG
GGTTCACGTAGATAGCCACAATCTCCAGTTCAGGGCCCATTATGGTGACC
TTGGCCTGCATGAAAACTTTGAGATGGAGTCTGCGTGGAGCTGGGTGGCC
CTAAGACGGGTCTGTCTGTGGGTGGAGAGTCTTGTAGCTTTGTTTGGTAT
CCCTGCTAGTATGTGGGGGACAGTCGCTTGCGGGTGCTTTGTTGGGGGTG
ATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTGCATGCTACATCCAAGAG
TGA
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