mRNA_4033 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A835Z8J8_9STRA (Flagellar associated protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J8_9STRA) HSP 1 Score: 468 bits (1203), Expect = 1.320e-166 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 3 Query: 6 MHGIHSLGVLPCIILCARAFSSHTASRTAVKMSTAAADLVGLTPFCLRQFTDSTYPGTKITHPPDDFNARVNEYLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 698 MHGIHSLGVLPCIILCARAFSSHTASRTAVKMSTAAADLVGLTPFCLRQFTDSTYPGTKITHPPDDFNARVNEYLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK Sbjct: 1 MHGIHSLGVLPCIILCARAFSSHTASRTAVKMSTAAADLVGLTPFCLRQFTDSTYPGTKITHPPDDFNARVNEYLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 231
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A835YXC5_9STRA (Flagellar associated protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC5_9STRA) HSP 1 Score: 229 bits (585), Expect = 5.480e-73 Identity = 115/187 (61.50%), Postives = 135/187 (72.19%), Query Frame = 3 Query: 135 PFCLRQFTDSTYPGTKITHPPDDFNARVNEYLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAII 695 PFCLRQF D +Y GTKI + P+ +N++ H+GYA FCKH+FM NF G+EG+IV IT ENE LLR+ Y+AR P EL VL R+FPRGSVP P A LD+ILYS +QIRKE AA ED S P WG+V IKAQ VD E+PMQPITMLRNALGR +GGSGV L+A Y ESV FWS HA + Sbjct: 16 PFCLRQFNDESYTGTKIHYSPEQCEEEINKHFQKNPTTHDGYASFCKHIFMPNFMGVEGAIVRITPENEALLRSGYQARTPKELAVLARWFPRGSVPPPPARYLDVILYSRDQIRKENAAMGEDCGSDAP-WGVVSIKAQDVDREVPMQPITMLRNALGRDQGGSGVPLDADAYRESVAFWSEHATL 201
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: D7FP80_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP80_ECTSI) HSP 1 Score: 223 bits (567), Expect = 1.470e-69 Identity = 117/222 (52.70%), Postives = 146/222 (65.77%), Query Frame = 3 Query: 36 PCIILCARAFSSHTASRTAVKMSTAAADLVGLTPFCLRQFTDSTYPGTKITHPPDDFNARVNE-YLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 698 PC + A S T MS + + + F +RQFTD +Y GTK+ + P +F +VNE + A GGKL EGYA FCKH+F+ NFAG++ S V IT ENE LL YEAR ELP+L R+F G+V P A LDIILYS EQIRKE AA ++ E WGI+ +K+Q VD+EIPMQPITM+RNALG+ EGGSGV L +KY +SVEFW HA +K Sbjct: 30 PCPLGFPAAASRRGYKSTTTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVAGYEARTAKELPILSRWFESGTVETPEAKFLDIILYSREQIRKETAAMGKEKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKEEGGSGVPLEREKYMQSVEFWRDHAPVK 251
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A7S3Y2J4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2J4_HETAK) HSP 1 Score: 219 bits (559), Expect = 1.690e-68 Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 3 Query: 87 TAVKMSTAAADLVGLTPFCLRQFTDSTYPGTKITHPPDDFNARVNE-YLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 698 T ++M+++ ++V + PFC+RQFTD Y GTKI + PDDF ++N+ + AG L +GYA FCKHLF+ NFAG+ GSI IT EN LL++ YEAR ELPVL+R+F VP LDIILYS EQIRKE A ED S P WGIV +KAQ ++YEIPMQPITM+RNALG +GGSGV L+A Y+ SV FW+ HA IK Sbjct: 38 TTLRMASSEREIV-IDPFCMRQFTDDAYTGTKINYDPDDFEVKINDLFSAGQAPLVDGYAPFCKHLFVPNFAGVVGSIAAITEENIHLLKSGYEARTEKELPVLVRWFSAEDVPQSETEFLDIILYSREQIRKENEAMGEDSGSDAP-WGIVSVKAQDINYEIPMQPITMMRNALGADQGGSGVTLDADAYAASVAFWTDHATIK 240
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A7S4FA99_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FA99_CHRCT) HSP 1 Score: 212 bits (540), Expect = 3.650e-66 Identity = 117/201 (58.21%), Postives = 134/201 (66.67%), Query Frame = 3 Query: 99 MSTAAADLVGLTPFCLRQFTDSTYPGTKITHPPDDFNARV-NEYLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPA-APTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAII 695 MS A+ L PFCLRQF D Y GTK+ H DF R+ + AG L +GYA FCKHLF+ NF +PIT ENE LLRT Y+AR ELPVL R+FP +VPAP A LDIILYS EQIRKE A D EP WGI+ +KAQ VDYE+PMQPITM+RNALG+SEGGSGV L +KY+ESV FW HA I Sbjct: 1 MSAASTRKFCLDPFCLRQFDDPKYSGTKVAHDKADFLERIIAAHDAGNAPLVDGYAPFCKHLFVPNFTPATTPYLPITPENEGLLRTAYDARTEQELPVLTRWFPAETVPAPPIAKFLDIILYSREQIRKEAEAMGRTDDQTEP-WGIISVKAQDVDYELPMQPITMMRNALGKSEGGSGVPLVREKYNESVNFWKQHAPI 200
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A7S1TVC6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVC6_9STRA) HSP 1 Score: 206 bits (525), Expect = 3.630e-63 Identity = 114/209 (54.55%), Postives = 139/209 (66.51%), Query Frame = 3 Query: 84 RTAVKMSTAAADLVGLTPFCLRQFTDST--YPGTKITHPPDDFNARVNE-YLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSV-PAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 698 RT+ +M+ A+ + L F LRQF D Y GTK++ +F A++NE Y AGG L +GYA FCKH+F+ NFAG++ S +PIT ENE LLR+ YEAR ELPVL RYFP +V P LDIILYS EQI KE A WGI+ +KAQ VDYE+PMQPITM+RNALGR +GGSGV L +KY ESV FWS +A IK Sbjct: 45 RTSTRMAMASTHELVLDEFALRQFNDRDPGYTGTKVSFDEAEFEAKINEAYDAGGKALVDGYAPFCKHIFVPNFAGVKASTLPITPENEHLLRSSYEARTEQELPVLSRYFPLAAVGEPPECKYLDIILYSREQIAKEAADMDRAAPDTTAPWGIISVKAQDVDYELPMQPITMMRNALGRDQGGSGVELVREKYDESVAFWSGNAPIK 253
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A7S4I9S5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I9S5_9EUKA) HSP 1 Score: 205 bits (522), Expect = 4.450e-63 Identity = 115/228 (50.44%), Postives = 147/228 (64.47%), Query Frame = 3 Query: 39 CIIL----CARAFSSHTASRTAVKMSTAAADLVGLTPFCLRQFTDSTYPGTKITHPPDDFNARVNE-YLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAP-AAPTLDIILYSGEQIRKERAA--RQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 698 C++L C A + + A+ MSTA L PF +RQF D Y GT+I H F A++NE Y +G L +GYA FCKH+F+ NF + +++PIT ENE LLR+ YEAR EL VL+R+FP +VP P A LDIILYS EQI KE A R E D P WGI+ +KAQ VDYE+PMQPITM+RN LG+ EGGSGV ++ ++Y+ SV FWS HA +K Sbjct: 1 CMLLRAGGCGAARGAALRPQIALLMSTAKVPTFNLDPFAMRQFDDPNYTGTRIDHDKTGFAAKINELYDSGDYPLVDGYAPFCKHIFVPNFTPAQLNVLPITKENEHLLRSGYEARTEQELEVLVRWFPVDAVPRPPVAKYLDIILYSREQINKEATAMGRDEHDDGGSP-WGIISVKAQDVDYELPMQPITMMRNTLGKEEGGSGVPMDRERYTASVAFWSGHAPLK 227
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A0L0GAW9_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAW9_9EUKA) HSP 1 Score: 203 bits (516), Expect = 2.880e-62 Identity = 105/188 (55.85%), Postives = 122/188 (64.89%), Query Frame = 3 Query: 138 FCLRQFTDSTYPGTKITHPPDDFNARVNE-YLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 698 F +RQF D Y GT+I P +F A+VNE Y +G L +GYA FCKHLF+ NF G++ ITA+N LL+T YEAR ELPVL+R+F V AP A LDIILYS EQI KE A WGI+ +K Q DYE+PMQPITMLRNALGR EGGSGV L +KYSESV FW HA K Sbjct: 33 FAMRQFDDPNYTGTRIKFDPSEFEAKVNEFYTSGEATLKDGYAPFCKHLFIPNFCGVKCGYARITADNRSLLQTEYEARSEKELPVLVRFFKTEDVTAPDATHLDIILYSKEQIIKENEAMGNPGKIMSAPWGIISVKGQTKDYELPMQPITMLRNALGRDEGGSGVKLEREKYSESVNFWKEHASFK 220
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A7S4A4J5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4J5_9STRA) HSP 1 Score: 199 bits (506), Expect = 8.270e-61 Identity = 109/191 (57.07%), Postives = 132/191 (69.11%), Query Frame = 3 Query: 135 PFCLRQFTDSTYPGTKITHPPDDFNARVNE-YLAGGGK--LHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAIIK 698 PFCLRQF ++ + P DF RVNE Y A GG+ L +GYA FCKH+F++NF +G++ IT ENE LLR+ Y AR EL VL R+FP+ S+ AP A LD+ILYS EQIR E AA ED S P WGIV +KAQ VD E+PMQPITM+RNALG EGGSGVAL+A KY ESV +W+ HA I+ Sbjct: 27 PFCLRQFDKTSGKAPFLDVPVADFEKRVNELYEAAGGEACLVDGYAPFCKHVFVENFVNAKGAVAAITPENEHLLRSGYSARTEKELAVLSRWFPKESIAAPTAKYLDLILYSREQIRIENAAMGEDSGSDAP-WGIVSVKAQDVDSELPMQPITMMRNALGADEGGSGVALDAAKYRESVAYWAGHAPIQ 216
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Match: A0A7S2UWN7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWN7_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.710e-60 Identity = 99/186 (53.23%), Postives = 124/186 (66.67%), Query Frame = 3 Query: 138 FCLRQFTDSTYPGTKITHPPDDFNARVNEYLAGGGKLHEGYAEFCKHLFMKNFAGIEGSIVPITAENEPLLRTCYEARRPAELPVLLRYFPRGSVPAPAAPTLDIILYSGEQIRKERAARQEDDTSWEPQWGIVGIKAQAVDYEIPMQPITMLRNALGRSEGGSGVALNAQKYSESVEFWSAHAII 695 FC+RQF D Y GT + + F +VNEY G L +GYA FCKHLF+ NFAG+E SIV IT EN L+++ Y+AR EL VL+R+ P+ V A LDIILYS EQI KE A ++ + WGI+ +KAQ VD+EIPMQPITM+RNALG+ GGSGV L+ KY+ESV FW +H I Sbjct: 76 FCIRQFDDDNYTGTNVYYDKQQFQDKVNEYHDNGTPLVDGYAPFCKHLFVPNFAGVERSIVAITEENRHLIQSEYQARTDKELLVLVRWIPKDKVEPSQASFLDIILYSREQINKENEAMGQEKPDTDAPWGIISVKAQDVDHEIPMQPITMMRNALGKEHGGSGVELSRDKYTESVNFWQSHVTI 261 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347777 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4033 ID=mRNA_4033|Name=jgi.p|Trimin1|347777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=719bp|location=Sequence derived from alignment at Contig_15:1494640..1496543- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACGACATGCACGGTATACACAGCCTGGGCGTGCTACCCTGCATCATTCTGback to top protein sequence of jgi.p|Trimin1|347777 >Trimin1|347777|estExt_Genemark1.C_Ctg_150175 ID=Trimin1|347777|estExt_Genemark1.C_Ctg_150175|Name=jgi.p|Trimin1|347777|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp MHGIHSLGVLPCIILCARAFSSHTASRTAVKMSTAAADLVGLTPFCLRQFback to top mRNA from alignment at Contig_15:1494640..1496543- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4033 ID=mRNA_4033|Name=jgi.p|Trimin1|347777|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1904bp|location=Sequence derived from alignment at Contig_15:1494640..1496543- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_15:1494640..1496543- >mRNA_4033 ID=mRNA_4033|Name=jgi.p|Trimin1|347777|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=696bp|location=Sequence derived from alignment at Contig_15:1494640..1496543- (Tribonema minus UTEX_B_3156 )back to top |