mRNA_4009 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: A0A835ZB36_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB36_9STRA) HSP 1 Score: 388 bits (997), Expect = 6.410e-135 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEGPGGGARLLEDGSGGAAHVTLSPMDXXXXXXXXXXXXXXXXXXXXRKAANLAELNRYFNAATEAAKSALDSGALAPELADISKLAAAAEGGPLDLPLPLTSLHFAKGTPGFRDKLKRKLEETGGMQC 732
RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEGPGGGARLLEDGSGGAAHVTLSPMDXXXXXXXXXXXXXXXXXXXXRKAANLAELNRYFNAATEAAKSALDSGALAPELADISKLAAAAEGGPLDLPLPLTSLHFAKGTPGFRDKLKRKLEETGGMQC
Sbjct: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEGPGGGARLLEDGSGGAAHVTLSPMDXXXXXXXXXXXXXXXXXXXXRKAANLAELNRYFNAATEAAKSALDSGALAPELADISKLAAAAEGGPLDLPLPLTSLHFAKGTPGFRDKLKRKLEETGGMQC 244
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: F0YL28_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL28_AURAN) HSP 1 Score: 177 bits (448), Expect = 4.040e-52 Identity = 107/214 (50.00%), Postives = 124/214 (57.94%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLG-NRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEGPGGGARLLEDGSGGAAHVTLSPMDXXXXXXXXXXXXXXXXXXXXRKAANLAELNRYFNAATEAAKSALDSGALAPELADISKLAAAAEGGPLDLP 639
RRVWT +ED AIR LV++YGTRSWSVIA+HI +DF+I GR+GKQCRERWHNHLDPHINK AWTEEEERIM++AH+ LG N+ SFMRRNVRRLNREVN+G + G P D RKAANLAEL RYF AA EAA L + D++K+A E PLD P
Sbjct: 7 RRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQDFNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREVNDGQPNHQHV------GIVAKQARPSDSFQAPPKRGRS---------RKAANLAELQRYFTAAAEAASEVLHEDTSSDNREDLAKIAEV-EIKPLDSP 204
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: A0A7S1XJ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ32_9STRA) HSP 1 Score: 174 bits (441), Expect = 2.950e-50 Identity = 102/188 (54.26%), Postives = 114/188 (60.64%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEG-PGGGARLLEDGSGGAAHVTLSPMDXXXXXXXXXXXXXXXXXXXXRKAANLAELNRYFNAATEAAKSALD 561
RRVWTKEED AIR LV ++GTRSWSVIA+ I DF+I GR+GKQCRERWHNHLDP INK AWT EEE+IM EAH++LGN+ SFMRRNVRRLNREV+EG PG L GGA S + RKAANLAEL RYF AA EAAK L+
Sbjct: 53 RRVWTKEEDHAIRELVAKHGTRSWSVIAERIVTDFNITGRTGKQCRERWHNHLDPTINKGAWTPEEEQIMVEAHKELGNKWSEIAKRLPGRTDNHVKNHWYSFMRRNVRRLNREVSEGIPGLDPSLAP---GGARPKNGSGKNGAAVGPDGKPEEKPKKGRSSRKAANLAELQRYFTAAIEAAKEVLE 237
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: F0YL55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL55_AURAN) HSP 1 Score: 159 bits (401), Expect = 5.510e-46 Identity = 72/118 (61.02%), Postives = 91/118 (77.12%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEG 354
RRVW+++ED AI+ LV++YGTRSWSVIA+HI D++I+GR+GKQCRERWHNHLDPHINK+AWT +EER+M++AH+ LGN+ SFMRRNVRRLNREVN+G
Sbjct: 6 RRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSDYNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREVNDG 123
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: W7T303_9STRA (Myb-like dna-binding domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T303_9STRA) HSP 1 Score: 153 bits (386), Expect = 8.870e-39 Identity = 98/119 (82.35%), Postives = 108/119 (90.76%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKD--FSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNE 351
RRVW+K+ED++IR LV +GTRSWSVIA+ IA D SI GR+GKQCRERWHNHLDP+INKNAWTEEEERIMSEAHR+LGN+XXXXXXXXXXXXXXXXXXXX SFMRRNVRRLNREV E
Sbjct: 90 RRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKXXXXXXXXXXXXXXXXXXXXYSFMRRNVRRLNREVAE 208
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: D7G1V7_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V7_ECTSI) HSP 1 Score: 127 bits (320), Expect = 8.530e-31 Identity = 62/119 (52.10%), Postives = 79/119 (66.39%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEGP 357
RRVW++EED+AIR LV ++GTRSW+ I +H+A D+SI GRSGKQCRERWHNHLDP I K WT EEE ++++ ++GNR S MRRNVR L+REV+ P
Sbjct: 17 RRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRTLSREVSGPP 135
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: A0A2R5FYY8_9STRA (Transcription factor MYB118 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY8_9STRA) HSP 1 Score: 125 bits (313), Expect = 4.480e-29 Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNEG 354
RR W++ ED+AIR LV ++GT+ WS IA + D+ I R+GKQCRERWHNHLDP I K+ WT EEE IM++AH++LGNR S MRRNVRRLN+EV +G
Sbjct: 14 RRAWSQREDDAIRTLVKEHGTKRWSTIATRLISDYRIDCRTGKQCRERWHNHLDPTIRKDPWTAEEEAIMAKAHQRLGNRWSEISKLLPGRTDNAIKNHWYSMMRRNVRRLNKEVLDG 131
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: A0A7S2SND5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SND5_9STRA) HSP 1 Score: 121 bits (304), Expect = 3.700e-28 Identity = 97/264 (36.74%), Postives = 128/264 (48.48%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREV----NEGPGGGARLLEDGSGGAAH---------VT-----------LSPMDXXXXXXXXXXXXXXXXXXXXRKAANLAELNRYFNAATEAAKSAL-DSGALAPE-LADISKLAAAAEGGPLDLPLPLTSLHFAKGTPGFRDKLKRKLEE 714
RRVW+ EEDEAIR LV + GT+ WS IA + + ++I GR+GKQCRERWHNHLDP I K W+E EE+ ++EAH++LGNR S MRRNVRRL +EV + PG +D GG VT +SP D RKAA+LAEL Y EAA + + A P+ + ++ LA A + +D P L + + FR+KL+ KL E
Sbjct: 43 RRVWSNEEDEAIRTLVGEQGTKKWSWIATELRQRYNIDGRTGKQCRERWHNHLDPEIKKCPWSESEEQALAEAHQKLGNRWSEISKLLPGRTDNAIKNHWYSTMRRNVRRLTKEVWSHRDMTPG------DDTQGGKKRRKKRCKDELVTPHNYKPVKKRKISP-DEAFVKKVAHKGKKMKKERVGRKAASLAELQDYVKTTAEAAAEVMAEMNAGQPDDIENVELLAKAGDEAVVD-PTGLAA-KVLSNSQEFREKLRLKLVE 297
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: A0A0V0Q997_PSEPJ (Homeodomain protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q997_PSEPJ) HSP 1 Score: 119 bits (299), Expect = 3.740e-27 Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNR 339
RR WT EED+AI LV +YG + W+++A + +D++++ RSGKQCRERWHNHLDP INK+ WTEEEE+++ EAHRQ GN+ S +RR++RR+N+
Sbjct: 9 RRAWTSEEDKAIIELVQKYGIKKWTIVAKKMQEDYNLKDRSGKQCRERWHNHLDPSINKSEWTEEEEKVIFEAHRQFGNKWAEIAKLLPGRTDNSIKNHFYSTLRRSLRRINK 121
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Match: G0QWF7_ICHMG (Myb protein, putative (Fragment) n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QWF7_ICHMG) HSP 1 Score: 110 bits (275), Expect = 1.350e-26 Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query: 1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHLDPHINKNAWTEEEERIMSEAHRQLGNRXXXXXXXXXXXXXXXXXXXXXSFMRRNVRRLNREVNE 351
RR W +ED+ I+ LV YG + W+VIA + + +S++GRSGKQCRERWHNHLDP INK WT +EE+I+ EAH+Q GN+ S +RR++RR+N+ + +
Sbjct: 4 RRSWDNQEDKVIKELVALYGVKKWTVIAQKMEQIYSLKGRSGKQCRERWHNHLDPGINKLPWTNKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHFYSKLRRSLRRINKLLGD 120 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142336 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4009 ID=mRNA_4009|Name=jgi.p|Trimin1|142336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_15:1314025..1316301+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGGCGTGTATGGACTAAGGAGGAGGACGAGGCTATACGGGGCCTGGTGCTback to top protein sequence of jgi.p|Trimin1|142336 >Trimin1|142336|gw1.15.183.1 ID=Trimin1|142336|gw1.15.183.1|Name=jgi.p|Trimin1|142336|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHback to top mRNA from alignment at Contig_15:1314025..1316301+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4009 ID=mRNA_4009|Name=jgi.p|Trimin1|142336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2277bp|location=Sequence derived from alignment at Contig_15:1314025..1316301+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_15:1314025..1316301+ >mRNA_4009 ID=mRNA_4009|Name=jgi.p|Trimin1|142336|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_15:1314025..1316301+ (Tribonema minus UTEX_B_3156 )back to top |