mRNA_3907 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A836CKW3_9STRA (C2H2 zinc finger protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKW3_9STRA) HSP 1 Score: 421 bits (1082), Expect = 2.930e-147 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 1 Query: 1 MPAFHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGNIDNFVKLARLSQLLLEYMLHVQSYQDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHPQEKAPEXXXXXXXXXXXXXXXXPEAEDSSIAEGAMRLAELVAKRKAELVSALPRAAAA 786 MPAFHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGNIDNFVKLARLSQLLLEYMLHVQSYQDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHPQEKAPEXXXXXXXXXXXXXXXXPEAEDSSIAEGAMRLAELVAKRKAELVSALPRAAAA Sbjct: 1 MPAFHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGNIDNFVKLARLSQLLLEYMLHVQSYQDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHPQEKAPEXXXXXXXXXXXXXXXXPEAEDSSIAEGAMRLAELVAKRKAELVSALPRAAAA 262
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: D8LDB0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB0_ECTSI) HSP 1 Score: 131 bits (329), Expect = 5.150e-32 Identity = 87/245 (35.51%), Postives = 127/245 (51.84%), Query Frame = 1 Query: 7 AFHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKV----VPDGNIDNF-VKLARLSQLLLEYMLHVQSYQDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDG-----------------------------TQQPPXXXXXXXA-------APVSATGAPDAA--IAHTCAECGKVFATSEYLDKHMARRHP 612 AF+FRQR G ++W KLA++DVDEVV+EVD+A LQ +LD+ F +V +P +D+ VKL RLSQL +EY+LHVQ Q+ + ++L T S K + ++RE ++++ +++TCQ +LRQYGID +++ L VAG G + PP A A VS GA + +A C CGK F++ ++L KHM RRHP Sbjct: 16 AFYFRQRHGKLDWKKLARIDVDEVVREVDIAVLQDLLDEVAFCEVSAEDIPPTGVDDLSVKLIRLSQLTIEYLLHVQECQEGYIQGLVRQLETANNNNQRLKAYAELSAKDGRRMKRESVQHKHVLNTCQSVLRQYGIDPRAIWESLPAEVAGAGGCSGPGAQPKDPRSCLPAAGMPSCGSHKPSAPPPPVEDSGVAQGGHNCGAAVSGGGASTSGTPVARVCGACGKAFSSEQFLRKHMDRRHP 260
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A7S2VWI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWI1_9STRA) HSP 1 Score: 101 bits (252), Expect = 8.110e-22 Identity = 61/161 (37.89%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 10 FHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGNIDNFVK---LA----RLSQLLLEYMLHVQSYQDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPP 471 F FRQR+G+M W+KL +DV+ +V++VDL ALQS+LD TF+K+ P+ + VK LA +L QL++EY+L+VQ + + QEL +A +NK+L+RE+ YQ ++ TC+ +L YG+D++ +FL S G PP Sbjct: 41 FFFRQRAGSMPWNKLETLDVERIVRDVDLDALQSLLDILTFTKLNPNISAPRDVKGESLAIRGMQLQQLIVEYLLNVQESMNQSEQTLKQELRAAAHHVADLDSQLDRLNTRNKSLKRELKMYQAVVKTCENMLTYYGLDSAEIFLAARASAGHYGKNPPP 201
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A1Y1HL47_KLENI (C2H2-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HL47_KLENI) HSP 1 Score: 82.8 bits (203), Expect = 3.100e-14 Identity = 66/211 (31.28%), Postives = 97/211 (45.97%), Query Frame = 1 Query: 10 FHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGNID----NFVKLARLSQLLLEYMLHVQSY-----QDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHPQ 615 F F +R ++W KL +DVD V++E D+ L+SILD F + + + NFVK+ RLSQL++EY+LHVQ L + A+ + TQK + A RR++ + + +ST + LLR +G G G AP + H C C K+F ++ YLD HMARRHP+ Sbjct: 129 FMFEKRRTRIDWRKLHGIDVDRVIREADIDTLESILDTIAFGDIEAEDTRNFTEFNFVKIFRLSQLMVEYLLHVQETLASHKSQLVVAGATVQRKTQKLHSTVSWHRDALA-----ATRRDLKQAKKTLSTYEILLRLHG--------------HGQGP-------------------APSSQQTHKCPTCDKLFESAYYLDLHMARRHPR 301
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A507EWM3_9FUNG (C2H2-type domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EWM3_9FUNG) HSP 1 Score: 81.6 bits (200), Expect = 8.120e-14 Identity = 63/204 (30.88%), Postives = 94/204 (46.08%), Query Frame = 1 Query: 10 FHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDG--NID-NFVKLARLSQLLLEYMLHVQSYQDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHP 612 F+F++R+ ++W LA + VD V +EVD+ ALQ I+++ TF + + +D NFVKL +++QL++EY++H Q Y + S++L R+A + AL++E T + L Y QL V G P D A H C C KVF + YLD HM RRHP Sbjct: 143 FYFKRRTERLDWRLLASLQVDRVQREVDILALQEIMENVTFCDLDSEDIRYVDPNFVKLIKIAQLIIEYLIHTQDYLAASQGALSKDLQDTSDRLALLTATYEKQDAELSALKKE-------NRTLKKTLYAY---------QLMARVPGHAPDTPNN----------------DVATYHRCGFCTKVFKSRAYLDNHMIRRHP 314
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: D8RH80_SELML (C2H2-type domain-containing protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RH80_SELML) HSP 1 Score: 76.3 bits (186), Expect = 4.920e-12 Identity = 57/211 (27.01%), Postives = 100/211 (47.39%), Query Frame = 1 Query: 4 PAFHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGNID----NFVKLARLSQLLLEYMLHVQSY---QDLRLLSASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHPQ 615 P F F++R ++W L ++VD ++QE+D+ L+++LD F + + + NF+KL RL+QL++EY+LHVQ+ Q +L+ A + +++ + KQ++ +++ + + T +GLLR G A+ QQ H C C K+F +S YLD H++RRHP+ Sbjct: 90 PPFCFQKRIARIDWRTLHAIEVDGLIQEIDIGKLETVLDTIAFGDIQGEDTRNFTEQNFIKLFRLAQLMIEYLLHVQTVLADQKSQLIGAVSGARRKGEKLRLRCLWQHDALKQSQ---KDLKHARKTLKTYEGLLRSNGKQAA--------------VQQQ----------------------VHHCPCCEKIFESSYYLDLHVSRRHPR 261
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A0L0RVW8_ALLM3 (C2H2-type domain-containing protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RVW8_ALLM3) HSP 1 Score: 75.1 bits (183), Expect = 1.250e-11 Identity = 64/210 (30.48%), Postives = 97/210 (46.19%), Query Frame = 1 Query: 10 FHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDG---NIDNFVKLARLSQLLLEYMLHVQSY---QDLRLLSASQELATQKKRIAXXXXXXXXS----QKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRH 609 FHFR+R +NW + VDV V +E+DL ALQ ++D+ + + + NFVKL +L+QL++EY+LH Q D + E A + + +K+ K+L++ + YQ IM+ G +T+ AG+GT A V++ P A H C C KVF + YLD H+ RRH Sbjct: 43 FHFRRRRDRINWRLIGAVDVARVQREIDLGALQEVMDNVAYCDIESEDLRYTDPNFVKLFQLAQLVIEYLLHCQDVLHSSDQGARRQATEFAAEVDHLQQQNEKQLLEIYALKKETKSLKKTIFAYQ-IMTKTPGF---------------HTAAAGNGT-----VVADRGAGRVTS---PIAVEFHRCRYCPKVFNSLGYLDGHLRRRH 228
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A507DK87_9FUNG (C2H2-type domain-containing protein n=3 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DK87_9FUNG) HSP 1 Score: 75.1 bits (183), Expect = 1.290e-11 Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 1 Query: 7 AFHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGN--ID-NFVKLARLSQLLLEYMLHVQSY--QDLRLLS-----ASQELATQKKRIAXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHPQE 618 AF+FR+R +NW LA V +D++++EVDL +LQ ++++ F + + +D NFVKL ++SQL++EY+LH Q Y +D + ++ AS A K +K N+ LR+ + YQ + G P + P A + C C KVF + +LD H+ RRHP + Sbjct: 58 AFYFRKRRERLNWRALASVSLDKIIKEVDLDSLQDVMENIAFCDIEAEDLRFVDPNFVKLFKISQLMVEYLLHSQDYLVKDRQCMADELQKASISAANAAKISEAHMNELALFKKDNRMLRKSLFAYQIMAKLPNG--------------------------------------PGHSASGPVPASYNRCPYCPKVFNSQCFLDAHLCRRHPDQ 233
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A177WFB0_BATDL (C2H2-type domain-containing protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WFB0_BATDL) HSP 1 Score: 73.9 bits (180), Expect = 1.860e-11 Identity = 60/210 (28.57%), Postives = 95/210 (45.24%), Query Frame = 1 Query: 10 FHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGN--ID-NFVKLARLSQLLLEYMLHVQSYQDLRLLSASQELATQKKRI-------AXXXXXXXXSQKQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRH 609 FHF++R +NW LA V+V+++++E+D+ ALQ I+ + TF + + ID NFVKL +LSQL++E++LH Q + + S EL K + ++K+ +ALR+ + YQ + G+ + N S+A A H C C K F + +LD HM RRH Sbjct: 103 FHFKRRRERLNWRMLASVNVEKIMEELDIDALQDIMKNITFCDIEAEDLRCIDSNFVKLFQLSQLIVEFLLHSQDFLVDQRNECSSELELFKSKYNKTFELNEKLTTEAAQTKKEMRALRKTLYAYQLVAKLPGGISQ-------------NASIA---------------------------ATYHRCIHCTKSFTSQHFLDLHMQRRH 272
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Match: A0A507C479_9FUNG (C2H2-type domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C479_9FUNG) HSP 1 Score: 74.3 bits (181), Expect = 2.360e-11 Identity = 60/214 (28.04%), Postives = 93/214 (43.46%), Query Frame = 1 Query: 10 FHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDGN--ID-NFVKLARLSQLLLEYMLHVQSY--QDLRLLSASQELATQKKRIAXXXXXXXXSQ-----KQNKALRREVLRYQTIMSTCQGLLRQYGIDASSLFLQLNTSVAGDGTQQPPXXXXXXXAAPVSATGAPDAAIAHTCAECGKVFATSEYLDKHMARRHPQEK 621 F+FR+R +NW LA V +D +++EVDL +LQ + ++ F + + +D NFVKL +LSQL++EY+LH Q Y +D R ++ E A+ A ++ K N+ LR+ + YQ + G P P A + C C KVF + +LD H+ RRHP + Sbjct: 51 FYFRRRRERLNWRALAGVQLDNIIREVDLDSLQEVTENIAFCDIEAEDLRFVDPNFVKLFKLSQLMVEYLLHTQDYLVEDRRCVAEELERASASAADAIKVTDSHLNEIAVLRKDNRMLRKSLFAYQIMAKLPNG--------------------------------------PGHPGSGPVPASYNRCRYCPKVFNSEHFLDAHLRRRHPDNE 226 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161053 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3907 ID=mRNA_3907|Name=jgi.p|Trimin1|161053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_15:512345..513271- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCCGCTTTCCACTTCAGACAGCGTTCTGGCGCCATGAATTGGAGCAAback to top protein sequence of jgi.p|Trimin1|161053 >Trimin1|161053|e_gw1.15.118.1 ID=Trimin1|161053|e_gw1.15.118.1|Name=jgi.p|Trimin1|161053|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp MPAFHFRQRSGAMNWSKLAKVDVDEVVQEVDLAALQSILDDCTFSKVVPDback to top mRNA from alignment at Contig_15:512345..513271- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3907 ID=mRNA_3907|Name=jgi.p|Trimin1|161053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=927bp|location=Sequence derived from alignment at Contig_15:512345..513271- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_15:512345..513271- >mRNA_3907 ID=mRNA_3907|Name=jgi.p|Trimin1|161053|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_15:512345..513271- (Tribonema minus UTEX_B_3156 )back to top |