mRNA_3815 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAGCCTGAACGCCCTTTACTCCGGCGCTGCCGTGATATCTATTTTTCC
TGAAGGACGTTCCAATTGAGAGCTCTGGCGCCCGGCGAGCACCTGTGTGA
AAATGCCGCCAAAGAAGGTGGACAAGAAGAAGATTGCCAAGGTTATCGAG
GACAAGACCTTCGGCCTGAAGAACAAGAGCAAGTCAAAGGCCGTCCAGCA
GTATGTTGCTACTGTGGAGAAGAATGTCAAGAACTCCGCAGGAGCGGCTC
AGGCGGAGGCCAACAAGGCCAAGCGAAAGGCGGCAAAGGAGGCGGCCAAG
CAGGCGGAGCTGGAGATGAAGGCGCTTTTCAATGAGGCGCTGGTGGCCGG
CAAGAAGGCCCCCAAGGCGGGGGGGGGGAAGGGGGCGGAGCCGGACCCAG
TAGCCGTGGACACCAGGGAGAAACAGGTTCAGGAGACCTTTGTGGTGGCA
GAGGAGACGGAGAAGACTATAGAGGATCTCATCGAGGAGCAGCGAGCGAA
GCTGGCAGCGGAGGGCAAGGCGGGCACGCCGGTGACGTCGGAGACGCTCG
CGGCGTGGAAGGCGCGGCGCGCAGCAGCAAGGCGTGATGAGGAGCGGCGC
ATGGTGGAGCGCGAGATGGCCAAGAAGGGCAAGAAGAAGGGGCTCGCGGT
GCTGTCCGGCAGGGCGCTCTTCGACTACGACGCCTCGCTCTTCAAGGACG
ACGAGGACGCGTGTGGGCAGGAGGAGACGTCGCTGCGGGAAGAGCGCGGC
GACAGCGACGCGGAGAACGCAGACGGCAACGCCGCCGCCGCCGCCGCTAC
GGACGCGCAGGTCGCGGCCCTCGCGGACGGCGTCGACCAGGACCTGTTCC
TGGAGGCGGACGACGACGACATTGAGCTCGACGATCTCGACGAGAGCGAT
GCCGTGGATGACGGCGGCGCCGACGGCGGCGCGGAGGAGACCAAGGGGCC
GTGAGACGCGCAACGCATATTTACTTGGCGCGCGCGTGTGCGCACCTGCG
CGCGCTGTCACTTAGTATGTTGATGTTGTGCGTCGCGCGCCGGCGCCGGC
GGCCCGCAGGTGCGGCGCGCTGCGCTGCTGCGCGCTGCCGCCGTTCCCGA
CGGCTGCATT
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protein sequence of jgi.p|Trimin1|12314

>Trimin1|12314|CE12313_70 ID=Trimin1|12314|CE12313_70|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp
MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQ
AEANKAKRKAAKEAAKQAELEMKALFNEALVAGKKAPKAGGGKGAEPDPV
AVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLA
AWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDD
EDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFL
EADDDDIELDDLDESDAVDDGGADGGAEETKGP*
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mRNA from alignment at Contig_12:1264411..1268218+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3808bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )
GGCAGCCTGAACGCCCTTTACTCCGGCGCTGCCGTGATATCTATTTTTCC TGAAGGACGTTCCAATTGAGAGCTCTGGCGCCCGGCGAGCACCTGTGTGA AAATGCCGCCAAAGAAGGTGGACAAGAAGAAGATTGCCAAGGTTATCGAG GACAAGACCTTCGGCCTGAAGAACAAGAGCAAGTCAAAGGCCGTCCAGCA GTATGTTGCTACTGTGGAGAAGAATGTCAAGAACTCCGCAGGAGCGGTAA GTTTTGCAGCTTCAAAAGTGCCGATATTGCTCATGAAGGTTGAACATGTT GTTGCTGTGCCTTCAGGTCCAGTGACATGTTGAGTTGCAAACACGTAACA AAAAACCACACATCTCTTGCTCATTTCAGAGCTGCTAGTGTCCCAGAGTT TCGCTTACGAAGGCTCGGCAGTTCAAGCATTTGGTTGGCCATGTTGTTCT ATCTGCCATGCAGATGTGGCAAAGCTTACTAGTCCAAATGATTCCTTCTT ACCCACTCTGTACTATCTGAACCAATTGGGAACCGCACACGACCAGGCTC CGTCACAAGCTCCCTGAGCTACCGCAGCTCCCAAGCTACGCAGCCCATCA GCAGCAGCAGCACCTCCCGGCCACGACTGCGTTTGATAGCAGCCAACTCC ACCAGCGACTTCCATCACACATGAACTGCATGACACGTTACTTCCCTTGC AATTTCATCCTCACGCACGCAGGCTCAGGCGGAGGCCAACAAGGCCAAGC GAAAGGCGGCAAAGGAGGCGGCCAAGCAGGCGGAGCTGGAGATGAAGGCG CTTTTCAATGAGGCGCTGGTGGCCGGCAAGAAGGCCCCCAAGGCGGGGGG GGGGAAGGGGGCGGAGCCGGACCCAGTAGCCGTGGACACCAGGGAGAAAC AGGTACAAGTTGCTGAGTGTTAAGGCGAATGCATGCGGCAGGCTTGATGA AGGGGATTGAAGGGGGCACTCCTTAGGGCTATGTGAACGTGCCTGCATGG CGCTCCCGATTGGGGGTGGGAGAGTCACCAGCAGCAGTTGACACCAGCGA CAAGCAGCTGCCTGCTGCTGTTGAAGAGCAGCAGCGGCGGCACCAGTCCG CACAGAGTGTTCGCTTGTTGGGCGCCGGCGCGCAGTGCACACAAGCGATC GTCCAGCTGCGCAGCCTGCACACCCGCGCCGCCGTCCCCGCGCGTCTGTT CACAAGCGTAGCGCGAGAGCGTTCAGTCGGATCTCGCGCCTCACGTGTGC AGCGCACGCGCGTCGCGGTGGCGCGCGTGATGCGGCGGCGCTCAGCTTGA CTTGCGCGAATTGGCCTTTTCTTCCAGAAATGAGCCGCGCCGTATTGCGT CGCTGCATGGCTCACGCGCGTCTGTCCGCCCCCGCCTCCGCGACCGCCGC TGCGCCGTCCCCAGGTTCAGGAGACCTTTGTGGTGGCAGAGGAGACGGAG AAGACTATAGAGGATCTCATCGAGGAGCAGCGAGCGAAGCTGGCAGCGGA GGTGAGCCGCCGCGCTTGAGCTCTGCTCAAACAAACCACACAGAGTGAGC CCCATCATCAGACTTCAATGTTGTCTTGAAGTTTGGTGCTTTGAACAGCA TTGGTCCAATTGGTCCAACTGCCATTCATTCTCAGTCATCACCTCCGCTA CACATCACGCACTTTGAGCTGCTGACCGCGCGCTCATTCCTGTATGCCCG AACACAGACAGCGCAAAGAGTGAACACCTCCTGTCCCCTAGCAACGAGCC TGTCTCACACCGATTGCTCTGCTGTTGTGGGGCAAGGTGGGCACGCCGGT GATGTCAGAAACGCTCGCGACGTGGAAGGCGCGGCGCGCGGCGGCAAGCA CAAATAGGAGTAAATGCCACGCACCTGCATCATGCAGAAGCCACCGTTTA GCACTCATTATGTACTTTGAGCATGCCGATCAGGCGACCGTTTACCTTTG CTAAACCACAGGCAGCATCAGCAATGAGTGTTTCTGACAGCGTTCGTCGA GCAATGAGTCTCTCTTACAGTGATTGTTCCGCGGTCCCCAGGGCAAGGCG GGCACGCCGGTGACGTCGGAGACGCTCGCGGCGTGGAAGGCGCGGCGCGC AGCAGCAAGGCGTGATGAGGAGCGGCGCATGGTGGAGCGCGAGATGGCCA AGAAGGGCAAGAAGAAGGGGCTCGCGGTGCTGTCCGGCAGGGCGCTCTTC GACTACGACGCCTCGCTCTTCAAGTGAGTGCCCCGGTTAGGGTTAGGGTT AGGTTAGGCTAGGATTAGGCTTGGATTAGGGTTTATGTTAGGGTTGGGAT CAGGCAGCGGCGCAGCACATTGGTTTACAGACGGCATCTGCGCTAGAGGC GGCAATGAGCGCGTGCGCCATTGCCACGTAGCGCGCATATGGTAAAAGCG AGGGCAGGCGTCGCCGTGCGGTTGCCAGCGGCGCGGATCTCAAGTGCGGC GGCTTGCCGCTTCAACGAGTAGGGATGCGGCAGGCTTGTAGGACAGACGC GCGCAAGCCCTACGGGCGGACGCGCTGCCCCTGCTGCGAGTCTTGGTCGG ACGTCCACTGTGATCGAGTGCATTAGATTCGTCAGCCGCGTGGGCGTCAA ACGAGAAGCGCGTGCAAAAGGCTCAGCGCAGGGATGCACGTGTGAGCGGC CAGGGGGCACAGACGGAAACTGATGTGCGCACAGTCCGCTGACTGCCGCG CGGCGTTTCCGCCGCGGCGTCAGCGCGGCGCTGCGTGACGCGTCAGATGC AGCTGCAGCGCCGGCACCTAACCCTAACCCCTAACCTTGAACCCCAAGTT GGTCAGGACTTCCTGCAGCCTCGTAGCAATGTGTCACTCGCGTGTTGCCC TTGCAATGGGCAGTTGATGCGCGCAGCAGCGCTCAGCCAGGGCCAGGTCT CCTGGGCTGCTGGGCACTTGCCATGCCATGCAGCGACGCGCCGGCCGCTT GCCCTCTCATGCCGCGGCGGCACGGCACCGAGCAGCGCAGCGGCGCGACA GGCAGTGCACATGCACGCGCGCGCTGAAACTGCTTCAGTGCCTTGTAAGC AGCAGCGTTCAGCGGCAGCACGGCTGCAGTTTTGAGGCGGAAGGCCGTGG TTCAGAATTCAGCGGATTGCCAGGTTGAGGTTTTGGCTGCTGTGGCTGCT GTAAGCTGCAGGGCTGCCGGTGAAAATTGAAGCCTGCTGCCAAGGACCTG CAGCAGCGACTTGAAAACTGTCGGATGTACTTTTCATCACTTCCCGTTTA GCGTGCGAAGAAGCCCCCGTCAGATGTACTTTAAAACCGACAGTGTGTCT ACGGCACGCGGAGTGACTCCAGGGCTTTCGACATGAACTCACACGTTGCC CTACACTGCTGCTGCTGCCGCCGCCGCCGCCGCGCGCGCACAGGGACGAC GAGGACGCGTGTGGGCAGGAGGAGACGTCGCTGCGGGAAGAGCGCGGCGA CAGCGACGCGGAGAACGCAGACGGCAACGCCGCCGCCGCCGCCGCTACGG ACGCGCAGGTCGCGGCCCTCGCGGACGGCGTCGACCAGGACCTGTTCCTG GAGGCGGACGACGACGACATTGAGCTCGACGATCTCGACGAGAGCGATGC CGTGGATGACGGCGGCGCCGACGGCGGCGCGGAGGAGACCAAGGGGCCGT GAGACGCGCAACGCATATTTACTTGGCGCGCGCGTGTGCGCACCTGCGCG CGCTGTCACTTAGTATGTTGATGTTGTGCGTCGCGCGCCGGCGCCGGCGG CCCGCAGGTGCGGCGCGCTGCGCTGCTGCGCGCTGCCGCCGTTCCCGACG GCTGCATT
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Coding sequence (CDS) from alignment at Contig_12:1264411..1268218+

>mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCAAAGAAGGTGGACAAGAAGAAGATTGCCAAGGTTATCGAGGA
CAAGACCTTCGGCCTGAAGAACAAGAGCAAGTCAAAGGCCGTCCAGCAGT
ATGTTGCTACTGTGGAGAAGAATGTCAAGAACTCCGCAGGAGCGGCTCAG
GCGGAGGCCAACAAGGCCAAGCGAAAGGCGGCAAAGGAGGCGGCCAAGCA
GGCGGAGCTGGAGATGAAGGCGCTTTTCAATGAGGCGCTGGTGGCCGGCA
AGAAGGCCCCCAAGGCGGGGGGGGGGAAGGGGGCGGAGCCGGACCCAGTA
GCCGTGGACACCAGGGAGAAACAGGTTCAGGAGACCTTTGTGGTGGCAGA
GGAGACGGAGAAGACTATAGAGGATCTCATCGAGGAGCAGCGAGCGAAGC
TGGCAGCGGAGGGCAAGGCGGGCACGCCGGTGACGTCGGAGACGCTCGCG
GCGTGGAAGGCGCGGCGCGCAGCAGCAAGGCGTGATGAGGAGCGGCGCAT
GGTGGAGCGCGAGATGGCCAAGAAGGGCAAGAAGAAGGGGCTCGCGGTGC
TGTCCGGCAGGGCGCTCTTCGACTACGACGCCTCGCTCTTCAAGGACGAC
GAGGACGCGTGTGGGCAGGAGGAGACGTCGCTGCGGGAAGAGCGCGGCGA
CAGCGACGCGGAGAACGCAGACGGCAACGCCGCCGCCGCCGCCGCTACGG
ACGCGCAGGTCGCGGCCCTCGCGGACGGCGTCGACCAGGACCTGTTCCTG
GAGGCGGACGACGACGACATTGAGCTCGACGATCTCGACGAGAGCGATGC
CGTGGATGACGGCGGCGCCGACGGCGGCGCGGAGGAGACCAAGGGGCCGT
GA
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