mRNA_3815 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A835ZLI2_9STRA (DFRP_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLI2_9STRA) HSP 1 Score: 479 bits (1232), Expect = 5.860e-168 Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1 Query: 103 MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDESDAVDDGGADGGAEETKGP 951 MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDESDAVDDGGADGGAEETKGP Sbjct: 1 MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDESDAVDDGGADGGAEETKGP 283
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: D8LTJ1_ECTSI (DFRP_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ1_ECTSI) HSP 1 Score: 180 bits (457), Expect = 5.800e-51 Identity = 118/209 (56.46%), Postives = 148/209 (70.81%), Query Frame = 1 Query: 103 MPPKKVDKKKIA-----KVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAG-GGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711 MPPK+ KK ++IEDKTFGLKNK+KSK+VQ+Y++TV+K+V ++ ++A K+K+ E E+ ALF+EAL+ G K K G GKG P VAV+T+ KQVQETFV+ EE EKT+ED+IEEQR KL EGK GTPV ETLA WKA R A + EERR V+ EM KK K KGL+VLSGRAL+DYDA+LF+DD DA Sbjct: 1 MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVK--KGGTAGKGKTPA-VAVETKAKQVQETFVI-EEGEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADA 205
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S2R4K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4K8_9STRA) HSP 1 Score: 124 bits (311), Expect = 8.180e-29 Identity = 97/243 (39.92%), Postives = 122/243 (50.21%), Query Frame = 1 Query: 103 MPPKK------VDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEAL-------------------VAGKKAPKAGGGKGAEPDPVAVDTR---------------EKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711 MPPKK + K+ K+IEDKTFGLKNK KSK VQ+Y+ +V NVKN GAA+ E + ++ A+ E++ LFNEAL A K A K + P D E+++Q T T+E +IE QRAK+ +EG+ GTPVT ETLA W+ RA RR V E+ KK KGLAVLSG+ LF YD SLF DDE A Sbjct: 1 MPPKKNKESKKSESKRKDKIIEDKTFGLKNKKKSKTVQKYIQSVTSNVKNGRGAAEEEKRRQEKKAAKIAKMQADEELRILFNEALDGSLGPKKAKTKKDKQKEQAAALKKDAADSQKNLKDYPFIADEMLAMTGMLNELSPQELEEELQTFIRTGVSTRLTLEQVIELQRAKMRSEGRVGTPVTEETLAKWREDRAERRRQANAERVAAELRKKKGGKGLAVLSGKDLFTYDRSLFVDDEAA 243
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S3M6K0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6K0_9STRA) HSP 1 Score: 124 bits (312), Expect = 1.890e-28 Identity = 95/237 (40.08%), Postives = 127/237 (53.59%), Query Frame = 1 Query: 106 PPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVA--GKKAPKAGGGKGA----------------------------EPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEE 726 P KK ++K K I++ TFGLKNK+KSK VQQ++ VEK+VKN G A A K + E E++ LFNE + GKK A GA + P+ +D E V+ E KTIED+IEEQRAKLAAEGK GTPVT+E+ A W+ + A ++ E V+ E+ KK KGL+VLSG+ LF+Y++SLF DD+ A + E Sbjct: 23 PSKKAVREKKEKTIDEATFGLKNKNKSKKVQQFINRVEKSVKNQNGGADAAKAKEMKKENKLAQQLQEEELRILFNEGIANQFGKKKSAAAAKAGALGLTEQSKEIAAFMEGISSDDSDDESDNDEGPIFIDDEP----EATVIFRE--KTIEDIIEEQRAKLAAEGKKGTPVTAESFATWRTAKLAQKQAEAEARVKAELTKKKGGKGLSVLSGKELFNYNSSLFVDDDGAIDESE 253
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S1BEE4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEE4_9STRA) HSP 1 Score: 118 bits (295), Expect = 4.290e-27 Identity = 104/279 (37.28%), Postives = 144/279 (51.61%), Query Frame = 1 Query: 136 AKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQ---AEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTRE-------------------KQVQETFVVAEETEKTIEDLIEEQR-AKLAA---EGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDE 894 AK++EDKTFG+KNKSKS VQ V ++ N+ NS + AE K K+ A+ E +ALF EAL+A K K K E + D + K++++ F + T+ED IE QR AKL A G+ GTP+T E+L AW+ R+ + +E +++VE E+ KK KGL+VLSGRAL+ Y+ LF DDE+A + + + RE+ D TD V A + DLFL D DD +LDDLDE Sbjct: 21 AKLVEDKTFGMKNKSKSSKVQAQVRSITNNIMNSGDPKERKRAEMLKQKKSAAKAMRKAADQEREALFGEALMAVSK--KTSVKKKGENSAIGRDGGDAASKKTTSRAMKMMYQMDAKELEDKFKDDPDYVPTLEDEIESQRQAKLKALEKSGRKGTPITEESLKAWQERKRRRKAEEAKKLVETELKKKKGGKGLSVLSGRALYSYNKKLFVDDENAEDKNDIAEREKADDG-------------VTDDDVKEAAASIQSDLFLNGDHDDDDLDDLDE 284
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S2BQG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG9_9STRA) HSP 1 Score: 119 bits (297), Expect = 4.520e-27 Identity = 98/243 (40.33%), Postives = 134/243 (55.14%), Query Frame = 1 Query: 103 MPPKK------VDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFV-----VAEE----------------------------TEK-TIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711 MPPKK D+KK K+IEDKTFGLKNK+KSK VQ ++ V+ NV++S+G AE KA++ A+ E++ALFNEAL K K + + A +E++ ++T + +A+E +EK T+E +IE +RAK+ AEG+ GTPVT E+LA WK+ R RR VE EM KK KGL+VLSG+ LF Y+ SLF DDE+A Sbjct: 1 MPPKKKNANKKADQKKKDKIIEDKTFGLKNKNKSKKVQGFIKNVQNNVQSSSGK-NAEQMKAEKKAAKVAKMQADEELRALFNEALDGSGGLKKQKTKKDKQKEQAASIRKEERDKDTLMKDYPFIADEMLAMTGMLNDMEPEELDEQLAIFKKTGKSEKLTLEQIIELERAKMRAEGRIGTPVTEESLARWKSDREERRRLANIAKVEAEMKKKKGGKGLSVLSGKDLFAYNQSLFVDDEEA 242
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7R9VNV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VNV0_9STRA) HSP 1 Score: 111 bits (278), Expect = 4.750e-25 Identity = 99/224 (44.20%), Postives = 130/224 (58.04%), Query Frame = 1 Query: 112 KKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAE--ANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAP---------KAGGGKGAEPDPVAVDTREKQVQETFVVAEETEK---------TIEDLIEEQR----AKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711 KK +KK KVIEDKTFGLKNK+KSK VQQ++ +V +NV N+ G Q E A K XXXXXXXXX E ALF EAL+ GKK +A G + + + +R ++ E ++ T+ED IE QR AKL A GK GTPVT ET AW+ ++ DE +++VE E+ KK KGL+VLSG+ LF+Y LF+DD++A Sbjct: 14 KKALEKKKQKVIEDKTFGLKNKNKSKKVQQHIQSVTRNVMNTDGRTQRENEAKKXXXXXXXXXXXXXXAEQDALFGEALMYGKKKKALDAKEGKVEAKGRDHGDDEKKSGTSRAMKMMYQMDAKEMEDRLREDPNYVPTLEDEIEAQRQAMVAKLKASGKKGTPVTPETFKAWQEKKRKRHADEAKKLVEAELKKKKGGKGLSVLSGKDLFEYKKELFQDDDEA 237
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S4K466_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K466_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.070e-24 Identity = 94/215 (43.72%), Postives = 122/215 (56.74%), Query Frame = 1 Query: 142 VIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQA--EANKAKRXXXXXXXXXAELEMKALFNEALVAGK--KAPKAGGGK----GAEPDP-------------VAVDTREKQVQETFVVAEETEKTIEDLIEEQR----AKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711 V+EDKTFGLKNK+KSK VQQ++ +V K V NS G ++ E KA + XXXX + E +ALF EAL+ GK KA A GK G + D + K++++ T+ED IE QR AKL A GK GTPVT ET AW+ R+ DE ++MVE E+ KK KGL+VLSG+ LF+Y LFKDD++A Sbjct: 42 VLEDKTFGLKNKNKSKKVQQHIQSVTKGVMNSDGRSKRDDEKKKAAKMARKXXXXAEKAEQEALFGEALMFGKNKKALDAKSGKVEAKGRDHDDGDEKKGGTSRAMKMMYQMDAKEMEDRLREDPNYVPTLEDEIESQRQAMVAKLKASGKKGTPVTPETFKAWQERKRKRHADEAKKMVEAELKKKKGGKGLSVLSGKDLFEYKKELFKDDDEA 256
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S1VVP4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVP4_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.400e-23 Identity = 104/276 (37.68%), Postives = 143/276 (51.81%), Query Frame = 1 Query: 145 IEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQA---EANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPK-------AGGGKGAEPDPVAVDTREKQVQETFVVAEETEK----------TIEDLIEEQRAKLAAE----GKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLF--KDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDE 894 IEDKTFGLKNK+KS V+ +V +VEK+V NS E ++ A+ E +ALF+EAL+A +K K + G+ + D T + A+E E+ T+ED IE +R + AE GK GTPVT E+ AW+ R+ + DE R+ VE E+ KK KGL+VLSGRAL++Y LF KD++ A S+ EE G+S V +A+ V+++LFLE DDDD LDDLDE Sbjct: 25 IEDKTFGLKNKNKSAKVRAHVKSVEKSVLNSGDPRMRRLEEQRTKQKAEAKARRKAAKQEQQALFDEALLAVQKKGKNLKAGKVSAQGRDGDDDKKKAGTSRAMKMMYQMDAKEMEERLRDDPNYVPTLEDNIEAERQRKLAELKESGKTGTPVTEESFRAWQERKRKRKADEARKKVEAELKKKKGGKGLSVLSGRALYEYKKELFVDKDEDGAAVVSPKSIPEENGNS------------------VDHVAEKVEENLFLEGDDDD--LDDLDE 280
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A6T6H7B8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6H7B8_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.790e-22 Identity = 108/285 (37.89%), Postives = 137/285 (48.07%), Query Frame = 1 Query: 112 KKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAK--RXXXXXXXXXAELEMKALFNEALVAGKKAP---------KAGGGKGAEPDPVAVDTREKQVQETFVVAEETEK---------TIEDLIEEQRAKLAAEGKA---GTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLF-KDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDE 894 KK ++KK K+IED+TFGLKNK+KSK VQQ++ +V K V + + E K K R E E ALF EAL+A KK +A G G + +R ++ E ++ T+ED IE +R K AE K GT VT E+ AAWK ++ R +E R+ VE E KK KGLA+LSGR LF+Y LF KD ED A D QV +A V DLFLE DDDD LDDLD+ Sbjct: 13 KKTEQKKKNKIIEDRTFGLKNKNKSKKVQQHIQSVTKQVMSVDRRTRMEEEKRKQMRKDHKLRKKAEEAERNALFGEALLAVKKKKTTNQKDGKQEAKGRDGNDESAKKGTSRAMKMMYQMDAQEMEDRLKEDPNYVPTLEDEIESERQKKVAELKKSGQGTKVTPESFAAWKEKKRKRRAEEARKKVEAEFKKKKGGKGLAILSGRDLFEYKRELFDKDLEDG----------------------------AADKQVDDVAAKVQSDLFLEGDDDD--LDDLDD 267 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCAGCCTGAACGCCCTTTACTCCGGCGCTGCCGTGATATCTATTTTTCCback to top protein sequence of jgi.p|Trimin1|12314 >Trimin1|12314|CE12313_70 ID=Trimin1|12314|CE12313_70|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQback to top mRNA from alignment at Contig_12:1264411..1268218+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3808bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_12:1264411..1268218+ >mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )back to top |