mRNA_3815 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|12314
Unique NamemRNA_3815
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A835ZLI2_9STRA (DFRP_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLI2_9STRA)

HSP 1 Score: 479 bits (1232), Expect = 5.860e-168
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 1
Query:  103 MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDESDAVDDGGADGGAEETKGP 951
            MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDESDAVDDGGADGGAEETKGP
Sbjct:    1 MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDESDAVDDGGADGGAEETKGP 283          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: D8LTJ1_ECTSI (DFRP_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ1_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 5.800e-51
Identity = 118/209 (56.46%), Postives = 148/209 (70.81%), Query Frame = 1
Query:  103 MPPKKVDKKKIA-----KVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAG-GGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711
            MPPK+   KK       ++IEDKTFGLKNK+KSK+VQ+Y++TV+K+V ++     ++A K+K+          E E+ ALF+EAL+ G K  K G  GKG  P  VAV+T+ KQVQETFV+ EE EKT+ED+IEEQR KL  EGK GTPV  ETLA WKA R A +  EERR V+ EM KK K KGL+VLSGRAL+DYDA+LF+DD DA
Sbjct:    1 MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVK--KGGTAGKGKTPA-VAVETKAKQVQETFVI-EEGEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADA 205          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S2R4K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4K8_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.180e-29
Identity = 97/243 (39.92%), Postives = 122/243 (50.21%), Query Frame = 1
Query:  103 MPPKK------VDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEAL-------------------VAGKKAPKAGGGKGAEPDPVAVDTR---------------EKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711
            MPPKK       + K+  K+IEDKTFGLKNK KSK VQ+Y+ +V  NVKN  GAA+ E  + ++         A+ E++ LFNEAL                    A  K   A   K  +  P   D                 E+++Q        T  T+E +IE QRAK+ +EG+ GTPVT ETLA W+  RA  RR      V  E+ KK   KGLAVLSG+ LF YD SLF DDE A
Sbjct:    1 MPPKKNKESKKSESKRKDKIIEDKTFGLKNKKKSKTVQKYIQSVTSNVKNGRGAAEEEKRRQEKKAAKIAKMQADEELRILFNEALDGSLGPKKAKTKKDKQKEQAAALKKDAADSQKNLKDYPFIADEMLAMTGMLNELSPQELEEELQTFIRTGVSTRLTLEQVIELQRAKMRSEGRVGTPVTEETLAKWREDRAERRRQANAERVAAELRKKKGGKGLAVLSGKDLFTYDRSLFVDDEAA 243          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S3M6K0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6K0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.890e-28
Identity = 95/237 (40.08%), Postives = 127/237 (53.59%), Query Frame = 1
Query:  106 PPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVA--GKKAPKAGGGKGA----------------------------EPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEE 726
            P KK  ++K  K I++ TFGLKNK+KSK VQQ++  VEK+VKN  G A A   K  +          E E++ LFNE +    GKK   A    GA                            +  P+ +D       E  V+  E  KTIED+IEEQRAKLAAEGK GTPVT+E+ A W+  + A ++ E    V+ E+ KK   KGL+VLSG+ LF+Y++SLF DD+ A  + E
Sbjct:   23 PSKKAVREKKEKTIDEATFGLKNKNKSKKVQQFINRVEKSVKNQNGGADAAKAKEMKKENKLAQQLQEEELRILFNEGIANQFGKKKSAAAAKAGALGLTEQSKEIAAFMEGISSDDSDDESDNDEGPIFIDDEP----EATVIFRE--KTIEDIIEEQRAKLAAEGKKGTPVTAESFATWRTAKLAQKQAEAEARVKAELTKKKGGKGLSVLSGKELFNYNSSLFVDDDGAIDESE 253          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S1BEE4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEE4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.290e-27
Identity = 104/279 (37.28%), Postives = 144/279 (51.61%), Query Frame = 1
Query:  136 AKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQ---AEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTRE-------------------KQVQETFVVAEETEKTIEDLIEEQR-AKLAA---EGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDE 894
            AK++EDKTFG+KNKSKS  VQ  V ++  N+ NS    +   AE  K K+         A+ E +ALF EAL+A  K  K    K  E   +  D  +                   K++++ F    +   T+ED IE QR AKL A    G+ GTP+T E+L AW+ R+   + +E +++VE E+ KK   KGL+VLSGRAL+ Y+  LF DDE+A  + + + RE+  D               TD  V   A  +  DLFL  D DD +LDDLDE
Sbjct:   21 AKLVEDKTFGMKNKSKSSKVQAQVRSITNNIMNSGDPKERKRAEMLKQKKSAAKAMRKAADQEREALFGEALMAVSK--KTSVKKKGENSAIGRDGGDAASKKTTSRAMKMMYQMDAKELEDKFKDDPDYVPTLEDEIESQRQAKLKALEKSGRKGTPITEESLKAWQERKRRRKAEEAKKLVETELKKKKGGKGLSVLSGRALYSYNKKLFVDDENAEDKNDIAEREKADDG-------------VTDDDVKEAAASIQSDLFLNGDHDDDDLDDLDE 284          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S2BQG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.520e-27
Identity = 98/243 (40.33%), Postives = 134/243 (55.14%), Query Frame = 1
Query:  103 MPPKK------VDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAGGGKGAEPDPVAVDTREKQVQETFV-----VAEE----------------------------TEK-TIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711
            MPPKK       D+KK  K+IEDKTFGLKNK+KSK VQ ++  V+ NV++S+G   AE  KA++         A+ E++ALFNEAL       K    K  + +  A   +E++ ++T +     +A+E                            +EK T+E +IE +RAK+ AEG+ GTPVT E+LA WK+ R   RR      VE EM KK   KGL+VLSG+ LF Y+ SLF DDE+A
Sbjct:    1 MPPKKKNANKKADQKKKDKIIEDKTFGLKNKNKSKKVQGFIKNVQNNVQSSSGK-NAEQMKAEKKAAKVAKMQADEELRALFNEALDGSGGLKKQKTKKDKQKEQAASIRKEERDKDTLMKDYPFIADEMLAMTGMLNDMEPEELDEQLAIFKKTGKSEKLTLEQIIELERAKMRAEGRIGTPVTEESLARWKSDREERRRLANIAKVEAEMKKKKGGKGLSVLSGKDLFAYNQSLFVDDEEA 242          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7R9VNV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VNV0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.750e-25
Identity = 99/224 (44.20%), Postives = 130/224 (58.04%), Query Frame = 1
Query:  112 KKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAE--ANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAP---------KAGGGKGAEPDPVAVDTREKQVQETFVVAEETEK---------TIEDLIEEQR----AKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711
            KK  +KK  KVIEDKTFGLKNK+KSK VQQ++ +V +NV N+ G  Q E  A K   XXXXXXXXX   E  ALF EAL+ GKK           +A G    + +  +  +R  ++       E  ++         T+ED IE QR    AKL A GK GTPVT ET  AW+ ++     DE +++VE E+ KK   KGL+VLSG+ LF+Y   LF+DD++A
Sbjct:   14 KKALEKKKQKVIEDKTFGLKNKNKSKKVQQHIQSVTRNVMNTDGRTQRENEAKKXXXXXXXXXXXXXXAEQDALFGEALMYGKKKKALDAKEGKVEAKGRDHGDDEKKSGTSRAMKMMYQMDAKEMEDRLREDPNYVPTLEDEIEAQRQAMVAKLKASGKKGTPVTPETFKAWQEKKRKRHADEAKKLVEAELKKKKGGKGLSVLSGKDLFEYKKELFQDDDEA 237          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S4K466_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K466_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.070e-24
Identity = 94/215 (43.72%), Postives = 122/215 (56.74%), Query Frame = 1
Query:  142 VIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQA--EANKAKRXXXXXXXXXAELEMKALFNEALVAGK--KAPKAGGGK----GAEPDP-------------VAVDTREKQVQETFVVAEETEKTIEDLIEEQR----AKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 711
            V+EDKTFGLKNK+KSK VQQ++ +V K V NS G ++   E  KA +    XXXX  + E +ALF EAL+ GK  KA  A  GK    G + D              +      K++++          T+ED IE QR    AKL A GK GTPVT ET  AW+ R+     DE ++MVE E+ KK   KGL+VLSG+ LF+Y   LFKDD++A
Sbjct:   42 VLEDKTFGLKNKNKSKKVQQHIQSVTKGVMNSDGRSKRDDEKKKAAKMARKXXXXAEKAEQEALFGEALMFGKNKKALDAKSGKVEAKGRDHDDGDEKKGGTSRAMKMMYQMDAKEMEDRLREDPNYVPTLEDEIESQRQAMVAKLKASGKKGTPVTPETFKAWQERKRKRHADEAKKMVEAELKKKKGGKGLSVLSGKDLFEYKKELFKDDDEA 256          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A7S1VVP4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVP4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.400e-23
Identity = 104/276 (37.68%), Postives = 143/276 (51.81%), Query Frame = 1
Query:  145 IEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQA---EANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPK-------AGGGKGAEPDPVAVDTREKQVQETFVVAEETEK----------TIEDLIEEQRAKLAAE----GKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLF--KDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDE 894
            IEDKTFGLKNK+KS  V+ +V +VEK+V NS         E    ++         A+ E +ALF+EAL+A +K  K       +  G+  + D     T         + A+E E+          T+ED IE +R +  AE    GK GTPVT E+  AW+ R+   + DE R+ VE E+ KK   KGL+VLSGRAL++Y   LF  KD++ A      S+ EE G+S                  V  +A+ V+++LFLE DDDD  LDDLDE
Sbjct:   25 IEDKTFGLKNKNKSAKVRAHVKSVEKSVLNSGDPRMRRLEEQRTKQKAEAKARRKAAKQEQQALFDEALLAVQKKGKNLKAGKVSAQGRDGDDDKKKAGTSRAMKMMYQMDAKEMEERLRDDPNYVPTLEDNIEAERQRKLAELKESGKTGTPVTEESFRAWQERKRKRKADEARKKVEAELKKKKGGKGLSVLSGRALYEYKKELFVDKDEDGAAVVSPKSIPEENGNS------------------VDHVAEKVEENLFLEGDDDD--LDDLDE 280          
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Match: A0A6T6H7B8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6H7B8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.790e-22
Identity = 108/285 (37.89%), Postives = 137/285 (48.07%), Query Frame = 1
Query:  112 KKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAK--RXXXXXXXXXAELEMKALFNEALVAGKKAP---------KAGGGKGAEPDPVAVDTREKQVQETFVVAEETEK---------TIEDLIEEQRAKLAAEGKA---GTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLF-KDDEDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFLEADDDDIELDDLDE 894
            KK ++KK  K+IED+TFGLKNK+KSK VQQ++ +V K V +     + E  K K  R          E E  ALF EAL+A KK           +A G  G +       +R  ++       E  ++         T+ED IE +R K  AE K    GT VT E+ AAWK ++   R +E R+ VE E  KK   KGLA+LSGR LF+Y   LF KD ED                             A D QV  +A  V  DLFLE DDDD  LDDLD+
Sbjct:   13 KKTEQKKKNKIIEDRTFGLKNKNKSKKVQQHIQSVTKQVMSVDRRTRMEEEKRKQMRKDHKLRKKAEEAERNALFGEALLAVKKKKTTNQKDGKQEAKGRDGNDESAKKGTSRAMKMMYQMDAQEMEDRLKEDPNYVPTLEDEIESERQKKVAELKKSGQGTKVTPESFAAWKEKKRKRRAEEARKKVEAEFKKKKGGKGLAILSGRDLFEYKRELFDKDLEDG----------------------------AADKQVDDVAAKVQSDLFLEGDDDD--LDDLDD 267          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|12314 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZLI2_9STRA5.860e-168100.00DFRP_C domain-containing protein n=1 Tax=Tribonema... [more]
D8LTJ1_ECTSI5.800e-5156.46DFRP_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S2R4K8_9STRA8.180e-2939.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3M6K0_9STRA1.890e-2840.08Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1BEE4_9STRA4.290e-2737.28Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2BQG9_9STRA4.520e-2740.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9VNV0_9STRA4.750e-2544.20Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4K466_9STRA1.070e-2443.72Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S1VVP4_9STRA1.400e-2337.68Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6T6H7B8_9STRA2.790e-2237.89Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:1264411..1268218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|12314|CE12313_70
BRITEko00000,ko00001,ko03009,ko03012
KEGG Pathwayko03013,map03013
KEGG koko:K03243,ko:K06185
GOsGO:0000981,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0023052,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0034097,GO:0034613,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141
Preferred nameZC3H15
Descriptioncytokine-mediated signaling pathway
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5252@1|root,KOG1763@2759|Eukaryota
Evalue2.11e-52
Seed ortholog2880.D8LTJ1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005810.1
TranscriptId12636
TrackFilteredModels1
ProteinId12314
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|12314gene_3815Tribonema minus UTEX_B_3156 geneContig_12 1264411..1268218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|12314Trimin1|12314|CE12313_70Tribonema minus UTEX_B_3156 polypeptideContig_12 1264513..1268062 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3815_1exon_3815_1Tribonema minus UTEX_B_3156 exonContig_12 1264411..1264656 +
exon_3815_2exon_3815_2Tribonema minus UTEX_B_3156 exonContig_12 1265133..1265312 +
exon_3815_3exon_3815_3Tribonema minus UTEX_B_3156 exonContig_12 1265825..1265911 +
exon_3815_4exon_3815_4Tribonema minus UTEX_B_3156 exonContig_12 1266452..1266633 +
exon_3815_5exon_3815_5Tribonema minus UTEX_B_3156 exonContig_12 1267804..1268218 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3815UTR5_3815Tribonema minus UTEX_B_3156 five_prime_UTRContig_12 1264411..1264512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3815CDS_3815Tribonema minus UTEX_B_3156 CDSContig_12 1264513..1264656 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3815UTR3_3815Tribonema minus UTEX_B_3156 three_prime_UTRContig_12 1268063..1268218 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1110bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAGCCTGAACGCCCTTTACTCCGGCGCTGCCGTGATATCTATTTTTCC
TGAAGGACGTTCCAATTGAGAGCTCTGGCGCCCGGCGAGCACCTGTGTGA
AAATGCCGCCAAAGAAGGTGGACAAGAAGAAGATTGCCAAGGTTATCGAG
GACAAGACCTTCGGCCTGAAGAACAAGAGCAAGTCAAAGGCCGTCCAGCA
GTATGTTGCTACTGTGGAGAAGAATGTCAAGAACTCCGCAGGAGCGGCTC
AGGCGGAGGCCAACAAGGCCAAGCGAAAGGCGGCAAAGGAGGCGGCCAAG
CAGGCGGAGCTGGAGATGAAGGCGCTTTTCAATGAGGCGCTGGTGGCCGG
CAAGAAGGCCCCCAAGGCGGGGGGGGGGAAGGGGGCGGAGCCGGACCCAG
TAGCCGTGGACACCAGGGAGAAACAGGTTCAGGAGACCTTTGTGGTGGCA
GAGGAGACGGAGAAGACTATAGAGGATCTCATCGAGGAGCAGCGAGCGAA
GCTGGCAGCGGAGGGCAAGGCGGGCACGCCGGTGACGTCGGAGACGCTCG
CGGCGTGGAAGGCGCGGCGCGCAGCAGCAAGGCGTGATGAGGAGCGGCGC
ATGGTGGAGCGCGAGATGGCCAAGAAGGGCAAGAAGAAGGGGCTCGCGGT
GCTGTCCGGCAGGGCGCTCTTCGACTACGACGCCTCGCTCTTCAAGGACG
ACGAGGACGCGTGTGGGCAGGAGGAGACGTCGCTGCGGGAAGAGCGCGGC
GACAGCGACGCGGAGAACGCAGACGGCAACGCCGCCGCCGCCGCCGCTAC
GGACGCGCAGGTCGCGGCCCTCGCGGACGGCGTCGACCAGGACCTGTTCC
TGGAGGCGGACGACGACGACATTGAGCTCGACGATCTCGACGAGAGCGAT
GCCGTGGATGACGGCGGCGCCGACGGCGGCGCGGAGGAGACCAAGGGGCC
GTGAGACGCGCAACGCATATTTACTTGGCGCGCGCGTGTGCGCACCTGCG
CGCGCTGTCACTTAGTATGTTGATGTTGTGCGTCGCGCGCCGGCGCCGGC
GGCCCGCAGGTGCGGCGCGCTGCGCTGCTGCGCGCTGCCGCCGTTCCCGA
CGGCTGCATT
back to top

protein sequence of jgi.p|Trimin1|12314

>Trimin1|12314|CE12313_70 ID=Trimin1|12314|CE12313_70|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=284bp
MPPKKVDKKKIAKVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQ
AEANKAKRKAAKEAAKQAELEMKALFNEALVAGKKAPKAGGGKGAEPDPV
AVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLA
AWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDD
EDACGQEETSLREERGDSDAENADGNAAAAAATDAQVAALADGVDQDLFL
EADDDDIELDDLDESDAVDDGGADGGAEETKGP*
back to top

mRNA from alignment at Contig_12:1264411..1268218+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3808bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )
GGCAGCCTGAACGCCCTTTACTCCGGCGCTGCCGTGATATCTATTTTTCC TGAAGGACGTTCCAATTGAGAGCTCTGGCGCCCGGCGAGCACCTGTGTGA AAATGCCGCCAAAGAAGGTGGACAAGAAGAAGATTGCCAAGGTTATCGAG GACAAGACCTTCGGCCTGAAGAACAAGAGCAAGTCAAAGGCCGTCCAGCA GTATGTTGCTACTGTGGAGAAGAATGTCAAGAACTCCGCAGGAGCGGTAA GTTTTGCAGCTTCAAAAGTGCCGATATTGCTCATGAAGGTTGAACATGTT GTTGCTGTGCCTTCAGGTCCAGTGACATGTTGAGTTGCAAACACGTAACA AAAAACCACACATCTCTTGCTCATTTCAGAGCTGCTAGTGTCCCAGAGTT TCGCTTACGAAGGCTCGGCAGTTCAAGCATTTGGTTGGCCATGTTGTTCT ATCTGCCATGCAGATGTGGCAAAGCTTACTAGTCCAAATGATTCCTTCTT ACCCACTCTGTACTATCTGAACCAATTGGGAACCGCACACGACCAGGCTC CGTCACAAGCTCCCTGAGCTACCGCAGCTCCCAAGCTACGCAGCCCATCA GCAGCAGCAGCACCTCCCGGCCACGACTGCGTTTGATAGCAGCCAACTCC ACCAGCGACTTCCATCACACATGAACTGCATGACACGTTACTTCCCTTGC AATTTCATCCTCACGCACGCAGGCTCAGGCGGAGGCCAACAAGGCCAAGC GAAAGGCGGCAAAGGAGGCGGCCAAGCAGGCGGAGCTGGAGATGAAGGCG CTTTTCAATGAGGCGCTGGTGGCCGGCAAGAAGGCCCCCAAGGCGGGGGG GGGGAAGGGGGCGGAGCCGGACCCAGTAGCCGTGGACACCAGGGAGAAAC AGGTACAAGTTGCTGAGTGTTAAGGCGAATGCATGCGGCAGGCTTGATGA AGGGGATTGAAGGGGGCACTCCTTAGGGCTATGTGAACGTGCCTGCATGG CGCTCCCGATTGGGGGTGGGAGAGTCACCAGCAGCAGTTGACACCAGCGA CAAGCAGCTGCCTGCTGCTGTTGAAGAGCAGCAGCGGCGGCACCAGTCCG CACAGAGTGTTCGCTTGTTGGGCGCCGGCGCGCAGTGCACACAAGCGATC GTCCAGCTGCGCAGCCTGCACACCCGCGCCGCCGTCCCCGCGCGTCTGTT CACAAGCGTAGCGCGAGAGCGTTCAGTCGGATCTCGCGCCTCACGTGTGC AGCGCACGCGCGTCGCGGTGGCGCGCGTGATGCGGCGGCGCTCAGCTTGA CTTGCGCGAATTGGCCTTTTCTTCCAGAAATGAGCCGCGCCGTATTGCGT CGCTGCATGGCTCACGCGCGTCTGTCCGCCCCCGCCTCCGCGACCGCCGC TGCGCCGTCCCCAGGTTCAGGAGACCTTTGTGGTGGCAGAGGAGACGGAG AAGACTATAGAGGATCTCATCGAGGAGCAGCGAGCGAAGCTGGCAGCGGA GGTGAGCCGCCGCGCTTGAGCTCTGCTCAAACAAACCACACAGAGTGAGC CCCATCATCAGACTTCAATGTTGTCTTGAAGTTTGGTGCTTTGAACAGCA TTGGTCCAATTGGTCCAACTGCCATTCATTCTCAGTCATCACCTCCGCTA CACATCACGCACTTTGAGCTGCTGACCGCGCGCTCATTCCTGTATGCCCG AACACAGACAGCGCAAAGAGTGAACACCTCCTGTCCCCTAGCAACGAGCC TGTCTCACACCGATTGCTCTGCTGTTGTGGGGCAAGGTGGGCACGCCGGT GATGTCAGAAACGCTCGCGACGTGGAAGGCGCGGCGCGCGGCGGCAAGCA CAAATAGGAGTAAATGCCACGCACCTGCATCATGCAGAAGCCACCGTTTA GCACTCATTATGTACTTTGAGCATGCCGATCAGGCGACCGTTTACCTTTG CTAAACCACAGGCAGCATCAGCAATGAGTGTTTCTGACAGCGTTCGTCGA GCAATGAGTCTCTCTTACAGTGATTGTTCCGCGGTCCCCAGGGCAAGGCG GGCACGCCGGTGACGTCGGAGACGCTCGCGGCGTGGAAGGCGCGGCGCGC AGCAGCAAGGCGTGATGAGGAGCGGCGCATGGTGGAGCGCGAGATGGCCA AGAAGGGCAAGAAGAAGGGGCTCGCGGTGCTGTCCGGCAGGGCGCTCTTC GACTACGACGCCTCGCTCTTCAAGTGAGTGCCCCGGTTAGGGTTAGGGTT AGGTTAGGCTAGGATTAGGCTTGGATTAGGGTTTATGTTAGGGTTGGGAT CAGGCAGCGGCGCAGCACATTGGTTTACAGACGGCATCTGCGCTAGAGGC GGCAATGAGCGCGTGCGCCATTGCCACGTAGCGCGCATATGGTAAAAGCG AGGGCAGGCGTCGCCGTGCGGTTGCCAGCGGCGCGGATCTCAAGTGCGGC GGCTTGCCGCTTCAACGAGTAGGGATGCGGCAGGCTTGTAGGACAGACGC GCGCAAGCCCTACGGGCGGACGCGCTGCCCCTGCTGCGAGTCTTGGTCGG ACGTCCACTGTGATCGAGTGCATTAGATTCGTCAGCCGCGTGGGCGTCAA ACGAGAAGCGCGTGCAAAAGGCTCAGCGCAGGGATGCACGTGTGAGCGGC CAGGGGGCACAGACGGAAACTGATGTGCGCACAGTCCGCTGACTGCCGCG CGGCGTTTCCGCCGCGGCGTCAGCGCGGCGCTGCGTGACGCGTCAGATGC AGCTGCAGCGCCGGCACCTAACCCTAACCCCTAACCTTGAACCCCAAGTT GGTCAGGACTTCCTGCAGCCTCGTAGCAATGTGTCACTCGCGTGTTGCCC TTGCAATGGGCAGTTGATGCGCGCAGCAGCGCTCAGCCAGGGCCAGGTCT CCTGGGCTGCTGGGCACTTGCCATGCCATGCAGCGACGCGCCGGCCGCTT GCCCTCTCATGCCGCGGCGGCACGGCACCGAGCAGCGCAGCGGCGCGACA GGCAGTGCACATGCACGCGCGCGCTGAAACTGCTTCAGTGCCTTGTAAGC AGCAGCGTTCAGCGGCAGCACGGCTGCAGTTTTGAGGCGGAAGGCCGTGG TTCAGAATTCAGCGGATTGCCAGGTTGAGGTTTTGGCTGCTGTGGCTGCT GTAAGCTGCAGGGCTGCCGGTGAAAATTGAAGCCTGCTGCCAAGGACCTG CAGCAGCGACTTGAAAACTGTCGGATGTACTTTTCATCACTTCCCGTTTA GCGTGCGAAGAAGCCCCCGTCAGATGTACTTTAAAACCGACAGTGTGTCT ACGGCACGCGGAGTGACTCCAGGGCTTTCGACATGAACTCACACGTTGCC CTACACTGCTGCTGCTGCCGCCGCCGCCGCCGCGCGCGCACAGGGACGAC GAGGACGCGTGTGGGCAGGAGGAGACGTCGCTGCGGGAAGAGCGCGGCGA CAGCGACGCGGAGAACGCAGACGGCAACGCCGCCGCCGCCGCCGCTACGG ACGCGCAGGTCGCGGCCCTCGCGGACGGCGTCGACCAGGACCTGTTCCTG GAGGCGGACGACGACGACATTGAGCTCGACGATCTCGACGAGAGCGATGC CGTGGATGACGGCGGCGCCGACGGCGGCGCGGAGGAGACCAAGGGGCCGT GAGACGCGCAACGCATATTTACTTGGCGCGCGCGTGTGCGCACCTGCGCG CGCTGTCACTTAGTATGTTGATGTTGTGCGTCGCGCGCCGGCGCCGGCGG CCCGCAGGTGCGGCGCGCTGCGCTGCTGCGCGCTGCCGCCGTTCCCGACG GCTGCATT
back to top

Coding sequence (CDS) from alignment at Contig_12:1264411..1268218+

>mRNA_3815 ID=mRNA_3815|Name=jgi.p|Trimin1|12314|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=852bp|location=Sequence derived from alignment at Contig_12:1264411..1268218+ (Tribonema minus UTEX_B_3156 )
ATGCCGCCAAAGAAGGTGGACAAGAAGAAGATTGCCAAGGTTATCGAGGA
CAAGACCTTCGGCCTGAAGAACAAGAGCAAGTCAAAGGCCGTCCAGCAGT
ATGTTGCTACTGTGGAGAAGAATGTCAAGAACTCCGCAGGAGCGGCTCAG
GCGGAGGCCAACAAGGCCAAGCGAAAGGCGGCAAAGGAGGCGGCCAAGCA
GGCGGAGCTGGAGATGAAGGCGCTTTTCAATGAGGCGCTGGTGGCCGGCA
AGAAGGCCCCCAAGGCGGGGGGGGGGAAGGGGGCGGAGCCGGACCCAGTA
GCCGTGGACACCAGGGAGAAACAGGTTCAGGAGACCTTTGTGGTGGCAGA
GGAGACGGAGAAGACTATAGAGGATCTCATCGAGGAGCAGCGAGCGAAGC
TGGCAGCGGAGGGCAAGGCGGGCACGCCGGTGACGTCGGAGACGCTCGCG
GCGTGGAAGGCGCGGCGCGCAGCAGCAAGGCGTGATGAGGAGCGGCGCAT
GGTGGAGCGCGAGATGGCCAAGAAGGGCAAGAAGAAGGGGCTCGCGGTGC
TGTCCGGCAGGGCGCTCTTCGACTACGACGCCTCGCTCTTCAAGGACGAC
GAGGACGCGTGTGGGCAGGAGGAGACGTCGCTGCGGGAAGAGCGCGGCGA
CAGCGACGCGGAGAACGCAGACGGCAACGCCGCCGCCGCCGCCGCTACGG
ACGCGCAGGTCGCGGCCCTCGCGGACGGCGTCGACCAGGACCTGTTCCTG
GAGGCGGACGACGACGACATTGAGCTCGACGATCTCGACGAGAGCGATGC
CGTGGATGACGGCGGCGCCGACGGCGGCGCGGAGGAGACCAAGGGGCCGT
GA
back to top