mRNA_3813 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|160091
Unique Name	mRNA_3813
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|160091 vs. uniprot
Match: A0A835ZDN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDN5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.870e-6
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1

Query:    1 LAANALTALPDEICGLAALRELNLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRCTHLSLNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEIGAAP 393
            LAANALTALPDEICGLAALRELNLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRCTHLSLNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEIGAAP
Sbjct:    1 LAANALTALPDEICGLAALRELNLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRCTHLSLNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEIGAAP 131

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|160091 vs. uniprot

BLAST of jgi.p|Trimin1|160091 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZDN5_9STRA	6.870e-6	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_12	contig	Contig_12:1235351..1237900 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|160091\|e_gw1.12.306.1
Hectar predicted targeting category	other localisation
TranscriptId	160413
Track	FilteredModels1
ProteinId	160091

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160091	gene_3813	Tribonema minus UTEX_B_3156	gene	Contig_12 1235351..1237900 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3813_1	exon_3813_1	Tribonema minus UTEX_B_3156	exon	Contig_12 1235351..1235459 +
exon_3813_2	exon_3813_2	Tribonema minus UTEX_B_3156	exon	Contig_12 1236188..1236365 +
exon_3813_3	exon_3813_3	Tribonema minus UTEX_B_3156	exon	Contig_12 1237615..1237900 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3813	CDS_3813	Tribonema minus UTEX_B_3156	CDS	Contig_12 1235351..1235459 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160091	Trimin1\|160091\|e_gw1.12.306.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_12 1235351..1237900 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_12:1235351..1237900+
coding sequence from alignment at Contig_12:1235351..1237900+

spliced messenger RNA

>mRNA_3813 ID=mRNA_3813|Name=jgi.p|Trimin1|160091|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_12:1235351..1237900+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGCGGCGAACGCGCTCACGGCGCTGCCGGACGAGATCTGCGGCTTGGC
GGCGCTGCGCGAGCTCAACCTGCTGGGGAACGCGCTGCGGGAGCTGCCGG
CGCGCATAGGCGCCCTGGCGCAGCTGCGCAGGCTCGAGCTCGCCGGCAAC
AAGCTGGAGGCGCTGCCGCCGAGCTTTGGCAACCTGACGCGGCTCAAGCG
CATAGTGCTCGACTGCAACCGCCTGCGCGCGCTGCCCGAGACGCTCGGCA
CGCTGCGCTGCACACACCTCAGCCTCAACTTCAACAGGCTCGGCGCGCTG
CCGCGCTGCGTCAAGGACATGCCGCGATTGCGCGCGCTGCGCGTCGACGG
CAACGGCCTGCGCGCGCTGCCGGGCGAGATCGGCGCGGCGCCGCGCCTCG
CGACGCTGAGCGCGTGCGGCAACCGCATCACGCAGCTGCCCGACTCGCTG
TGCGCGCTCGCGGCGCTGCGGCGCCTGTGGCTCGACCACAACTTCCTCGC
GAGCCTGCCAAGCGACTTTCACCGCCTCGAGGCGCTCGAGGAGCTGCGGC
TCGAGGTGAGAGCGATCGATTGA

protein sequence of jgi.p|Trimin1|160091

>Trimin1|160091|e_gw1.12.306.1 ID=Trimin1|160091|e_gw1.12.306.1|Name=jgi.p|Trimin1|160091|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
LAANALTALPDEICGLAALRELNLLGNALRELPARIGALAQLRRLELAGN
KLEALPPSFGNLTRLKRIVLDCNRLRALPETLGTLRCTHLSLNFNRLGAL
PRCVKDMPRLRALRVDGNGLRALPGEIGAAPRLATLSACGNRITQLPDSL
CALAALRRLWLDHNFLASLPSDFHRLEALEELRLEVRAID*

mRNA from alignment at Contig_12:1235351..1237900+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3813 ID=mRNA_3813|Name=jgi.p|Trimin1|160091|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2550bp|location=Sequence derived from alignment at Contig_12:1235351..1237900+ (Tribonema minus UTEX_B_3156 )
CTCGCGGCGAACGCGCTCACGGCGCTGCCGGACGAGATCTGCGGCTTGGC
GGCGCTGCGCGAGCTCAACCTGCTGGGGAACGCGCTGCGGGAGCTGCCGG
CGCGCATAGGTCGGTGCCGCGCTGCCGGTCCTAGTGGCAGTTGTACTTGC
CAATGCGCCTTCTGCTTGGCGCGTAGGTCAGCGCGCACTGTTGCTGGGGT
AGACTGCGCAGGGGCGGTCGGCTGTGGCTTCCGCAGTTCTGCAGACAAAG
GCTTGGGGGCGCGAGGCTGTGCTGGAGAGTGCGCTGCTGGAGCTGCCGGC
GCGCATAGGTCGGTGCCGTGTCGCCGGCTCATGTGACAGGCACACAGCGT
CTGGCTAGCGCACCGAGCGCTGACATTTGGCCTTCGCTGGGTGCTCCACC
GCAGCTGCCCAAAGCAGAGCATCGACAGTCCGCACGCAGCGTTGAGCGTC
CATGCGCAGCAGCAGGTCAGCGCAGCACACGCTGCTTGCGTGCGCCCTTG
CACCGTGCCCCACTGGCAAAGCTGCGTGCTGGCAGTCCGCGCGCGCCACC
AGCCTGACGTCCGTACTACTCAGGGGTGGCGCGCGGCTGGTCACAGACCT
CCTTCCCCGCATCCCTCACTGCAGAACACTAACCGCTGTTCATCATCCCT
CCGCAGCACAGTGGGGCTACATGCGGCAGGGAAGCCGATCTGCTTATTCA
AACGGCTGCTGCTGCAGCGCACCCACAATTCACACCGGGCATCCACATAC
CCCCCCCCCCCCGCCAGGCCTATAGTGCCCAAGGACTGACACTGTGCACA
TGCATATGCCACCCCCCCCATCCCTCCATCCCCCCAGGCGCCCTGGCGCA
GCTGCGCAGGCTCGAGCTCGCCGGCAACAAGCTGGAGGCGCTGCCGCCGA
GCTTTGGCAACCTGACGCGGCTCAAGCGCATAGTGCTCGACTGCAACCGC
CTGCGCGCGCTGCCCGAGACGCTCGGCACGCTGCGCTGCACACACCTCAG
CCTCAACTTCAACAGGTATTTGCTTCTCACTTGAAGCGGGAGCAGCACAG
CAGCGGCTATGGGCGCTGGCACGCGCGCGGCGGGGGATACTCTCAATAGT
AGCGATTGAAGTTTATTTGAAGTCTCATTTGAAGTAGGGGAGGTCAGGCG
GCGTGGGTGCTGGCATGCGTGTGGCGGCGGCACGTTTGAATAGAAGGCAG
TGGGTCATTTGAAGTAGCGTCCGAGCAAGAACTTCAAGGCAGGGGCAGCC
ACAGCTCCAGCAACATCGGCCTCTGACCCCGCGAAATGCTGTGCTATCGC
TCCGCACTCTGCGTCACATGCTGCAGCCTGAATGTGGCGGTCATCCTGTC
TGTTGCTGCACCGTATGGTCAGGCAACACAGATCAGATCCTCCGGAAACC
TAAACCCTGCGTGCACATGTGCCCGTTTTTGCCCTGATACGTGCCTGGAA
CGTCAGCTCCATTTCCGAGCACTGCCATTTTCAAGAGCTGCCGTACCTGA
GTGCTGCCGCTGGAGAGCGCCACCGACGCGCCGGCTGCTGCGAGGGCATC
ACGCGCCGGCACCCACCCGCCGCCAACACACTCAGAAACTAGGCACTCCT
GCCATTTCCAGCGCACTGCTGGCACACGCGTGCCTGAGTGCTGCCGCTGC
TGCGTGTCGATGACGTGTCGTGCTCCGGCTTGCACACGTCGTGCACCCGG
TCGTCCTCGGCGACACCCTTCCGCTCTTGCGCTCGTCATGACACGATACA
GCAGCGACCTCATCAACCTGAACATGCGTCTTCAGCAGCTGAACGGACGA
CCGCCGTGCGCGGCGCGCGCCGCGGCGCTTCCGCAGGCTGGGCGCGCTGC
TGTGCCACGCCAAGGACGCCAACACACACATTTCCGAGTGCTAGCACTTC
TGGGGGCCGCTGACGCGTTCCGCTCCAGCCTGCACAATGCTACATTCGAT
CATCCTCGCCGAAAGCGATTTTGTTCTCGCAGTCGTCACAAGTTGACGGC
GACCCTGATACCCACTTCTCGCATCGCGCAACATCAGAGCGTACGCACGC
CGCGCCGCGCCGCTCCCGCACGCAGGCTCGGCGCGCTGCCGCGCTGCGTC
AAGGACATGCCGCGGCTGCGCACGCTGCGCATCGACGGCAACGGCCTGCG
CGCGCTGCCGCGCGCGATCGCCGCGTCGCCGAGAATAGTGTTGTTCTCGC
AGTCATCGCAAGCTGACAGCGATCCCGATACTCAGTACGTGCGCCGCGAC
ACTTCTGCGCGCAGGCTCGGCGCGCTGCCGCGCTGCGTCAAGGACATGCC
GCGATTGCGCGCGCTGCGCGTCGACGGCAACGGCCTGCGCGCGCTGCCGG
GCGAGATCGGCGCGGCGCCGCGCCTCGCGACGCTGAGCGCGTGCGGCAAC
CGCATCACGCAGCTGCCCGACTCGCTGTGCGCGCTCGCGGCGCTGCGGCG
CCTGTGGCTCGACCACAACTTCCTCGCGAGCCTGCCAAGCGACTTTCACC
GCCTCGAGGCGCTCGAGGAGCTGCGGCTCGAGGTGAGAGCGATCGATTGA

Coding sequence (CDS) from alignment at Contig_12:1235351..1237900+

>mRNA_3813 ID=mRNA_3813|Name=jgi.p|Trimin1|160091|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_12:1235351..1237900+ (Tribonema minus UTEX_B_3156 )
CTCGCGGCGAACGCGCTCACGGCGCTGCCGGACGAGATCTGCGGCTTGGC
GGCGCTGCGCGAGCTCAACCTGCTGGGGAACGCGCTGCGGGAGCTGCCGG
CGCGCATAGGCGCCCTGGCGCAGCTGCGCAGGCTCGAGCTCGCCGGCAAC
AAGCTGGAGGCGCTGCCGCCGAGCTTTGGCAACCTGACGCGGCTCAAGCG
CATAGTGCTCGACTGCAACCGCCTGCGCGCGCTGCCCGAGACGCTCGGCA
CGCTGCGCTGCACACACCTCAGCCTCAACTTCAACAGGCTCGGCGCGCTG
CCGCGCTGCGTCAAGGACATGCCGCGATTGCGCGCGCTGCGCGTCGACGG
CAACGGCCTGCGCGCGCTGCCGGGCGAGATCGGCGCGGCGCCGCGCCTCG
CGACGCTGAGCGCGTGCGGCAACCGCATCACGCAGCTGCCCGACTCGCTG
TGCGCGCTCGCGGCGCTGCGGCGCCTGTGGCTCGACCACAACTTCCTCGC
GAGCCTGCCAAGCGACTTTCACCGCCTCGAGGCGCTCGAGGAGCTGCGGC
TCGAGGTGAGAGCGATCGATTGA