mRNA_3781 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|12062
Unique Name	mRNA_3781
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.130e-65
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 3

Query:   21 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK 356
            MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK
Sbjct:    1 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK 112

[Close]

BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.470e-43
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 3

Query:   21 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 353
            MYK  L ALC++ AA   +AFVAPAAPT   AT   MSAAPK GAIAT SAALL++AP LATEGTSEA GID+PL FW+PLTVI  INLIFFQWARTQPEGEFFGEYDERR
Sbjct:    1 MYKVLLAALCMVAAA---SAFVAPAAPTAIRATTTVMSAAPKAGAIATVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108

[Close]

BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.230e-13
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 3

Query:   75 NAFVAPAAPTMRAATVMSMSAAPK-------VGAIATA-SAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 353
            + FVAP  P + AA   S +A P        V  +A A S A+LT+AP LATEGT E  G ++     +PL  +V INL+F  WA+ QPEG+FF EYDERR
Sbjct:   15 SGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|12062 vs. uniprot

BLAST of jgi.p|Trimin1|12062 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A835ZAY3_9STRA	2.130e-65	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z064_9STRA	6.470e-43	75.68	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7G2S2_ECTSI	1.230e-13	47.52	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_12	contig	Contig_12:844387..846075 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|12062\|CE12061_1104
Hectar predicted targeting category	chloroplast
TranscriptId	12384
Track	FilteredModels1
ProteinId	12062

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|12062	gene_3781	Tribonema minus UTEX_B_3156	gene	Contig_12 844387..846075 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3781_2	exon_3781_2	Tribonema minus UTEX_B_3156	exon	Contig_12 844387..844987 -
exon_3781_1	exon_3781_1	Tribonema minus UTEX_B_3156	exon	Contig_12 845855..846075 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_3781	UTR3_3781	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_12 844387..844849 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3781	CDS_3781	Tribonema minus UTEX_B_3156	CDS	Contig_12 845855..846055 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_3781	UTR5_3781	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_12 846056..846075 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|12062	Trimin1\|12062\|CE12061_1104	Tribonema minus UTEX_B_3156	polypeptide	Contig_12 844850..846055 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_12:844387..846075-
coding sequence from alignment at Contig_12:844387..846075-

spliced messenger RNA

>mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAGAAGACCAGTAGCAGCCATGTACAAGAAGGCTCTGACTGCGCTGTGC
CTGCTGGTGGCTGCCATGGGCGCCAACGCCTTCGTGGCGCCCGCTGCGCC
CACCATGCGCGCCGCCACGGTCATGTCCATGTCCGCAGCCCCCAAGGTTG
GCGCCATTGCCACTGCCTCGGCGGCGCTGCTGACCTCCGCGCCCGTGCTT
GCCACCGAGGGCACCAGCGAGGCCTTCGGCATCGACTCCCCCCTGGGCTT
CTGGCTCCCCCTGACGGTCATCGTCTTCATCAACCTCATCTTCTTCCAGT
GGGCGCGCACGCAGCCGGAGGGCGAGTTCTTCGGCGAGTACGACGAGAGG
CGGAAGTAGACGCTTCACACCAATGACCCCGGGGGGGGGGAGGGGGGCAG
GCAGCAGAGCTGCTGCTCGGGTCAGGTTTAGCACGAACCCCCCCCCCCCC
TGACCCTGTTCACATGGAAGCCCGCGGCCGCCACGGAGAGGGGAGTGCGG
GGGGGTCCTGGCAGTTGAGCGCATGGAGCGAGGGCGGGAGAGCTCTAGCA
TTCATGAGGGTCTGCATCTGGGCCAGTGTTTCCCGCTGCCTGCCCTGGAG
AGCTGTGTGTGACGGGGGGGGAGGGGGGGCAGAGGCAGCGAGGGGCAAGG
GGGAGTTGAGCGCTGCCGTTGCTGCTTTCACAACGGAGCCACGCCACGGC
GGCCGATTTTCTCTCACCAGAGGCAAGGTGTGCCGTGTACATATATTTGG
AACTCTCCGCGGCGCCGCCGCCGCCTTGCACACCCCATAATGATAACGCA
GCATGTTTTGATTTCTGTCCGA

protein sequence of jgi.p|Trimin1|12062

>Trimin1|12062|CE12061_1104 ID=Trimin1|12062|CE12061_1104|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATAS
AALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPE
GEFFGEYDERRK*

mRNA from alignment at Contig_12:844387..846075-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1689bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )
CCAGAAGACCAGTAGCAGCCATGTACAAGAAGGCTCTGACTGCGCTGTGC
CTGCTGGTGGCTGCCATGGGCGCCAACGCCTTCGTGGCGCCCGCTGCGCC
CACCATGCGCGCCGCCACGGTCATGTCCATGTCCGCAGCCCCCAAGGTTG
GCGCCATTGCCACTGCCTCGGCGGCGCTGCTGACCTCCGCGCCCGTGCTT
GCCACCGAGGGCACCAGCGAGGTGAGCAGCAAAAAGCCGGCCAAATGACT
GACTGGCACGTGGTGTGCATCGGATCTTTGGTGGTGCCTACACACCGACA
CAGCAGGATGCGAGTCTGACGCATGTTTTGAGACGGGAGAGCAAGATCCA
TGCGGGGCGCGCGCTGCGCCATGGATACGTGCTGCTTCGGCATCCTGAAA
CGTCTGCTGTTTCTGGGTGATTGAGGCCAGCCTGTATCTGCAGCTGATCA
TCAAGGAAGCGGAAGACCAATTGTGGCCACAGTTGGCTAGTAGATCTGTG
TGGACGCTCATACTCGTATAGCAGCAGCAGACGAAATGCCAATGCACGCA
GCTCATGCTTTCAGCTTAAAGTTGCCAACATAGGTGTTCTGGCAATGTTT
GTCAAGCTGGTGCTGTGCTGCTGCCGATGGCAGTCAGAGCCTTTGGATCT
TTCCCTGGCTCGCCTGCAGTCGTTCACACAATGTTGGCTGGTGCCAATGC
AGCACTGTCACTCTCTAGCACTCCAGCTCATGTGGTGAGTTCTCGAGCGT
GGTCATCATGCCATTGCTGTGTTGCATGCGATGCCGCAACAGCAGAGCAG
ATCTCGCAGTTGACGATGCAGAAAGTGTGCCCTGCAACAGGGAGTTCGCC
ATGTTTGCAGCAGCAGTCCGCCTTGTGGCTGGCTGACAGCGTGCGCGTCA
CGCGGTGTCACGCAGCCGCCTCAGCGGCGTGGGTTCCCACCTCAGCTAGC
TGCCTGAAATTCACCGCTGATGCGAGTTGAAGTGAATGGTGCACACTTGC
ACTCATGCAGTCTAGTGACGCCTGCTGCCTGCCATCTCATTTCGCCGTCG
TCCCACTGACCCCCCCCCCTTCCCTCCCCCCCTTTCAGGCCTTCGGCATC
GACTCCCCCCTGGGCTTCTGGCTCCCCCTGACGGTCATCGTCTTCATCAA
CCTCATCTTCTTCCAGTGGGCGCGCACGCAGCCGGAGGGCGAGTTCTTCG
GCGAGTACGACGAGAGGCGGAAGTAGACGCTTCACACCAATGACCCCGGG
GGGGGGGAGGGGGGCAGGCAGCAGAGCTGCTGCTCGGGTCAGGTTTAGCA
CGAACCCCCCCCCCCCCTGACCCTGTTCACATGGAAGCCCGCGGCCGCCA
CGGAGAGGGGAGTGCGGGGGGGTCCTGGCAGTTGAGCGCATGGAGCGAGG
GCGGGAGAGCTCTAGCATTCATGAGGGTCTGCATCTGGGCCAGTGTTTCC
CGCTGCCTGCCCTGGAGAGCTGTGTGTGACGGGGGGGGAGGGGGGGCAGA
GGCAGCGAGGGGCAAGGGGGAGTTGAGCGCTGCCGTTGCTGCTTTCACAA
CGGAGCCACGCCACGGCGGCCGATTTTCTCTCACCAGAGGCAAGGTGTGC
CGTGTACATATATTTGGAACTCTCCGCGGCGCCGCCGCCGCCTTGCACAC
CCCATAATGATAACGCAGCATGTTTTGATTTCTGTCCGA

Coding sequence (CDS) from alignment at Contig_12:844387..846075-

>mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )
ATGTACAAGAAGGCTCTGACTGCGCTGTGCCTGCTGGTGGCTGCCATGGG
CGCCAACGCCTTCGTGGCGCCCGCTGCGCCCACCATGCGCGCCGCCACGG
TCATGTCCATGTCCGCAGCCCCCAAGGTTGGCGCCATTGCCACTGCCTCG
GCGGCGCTGCTGACCTCCGCGCCCGTGCTTGCCACCGAGGGCACCAGCGA
GGCCTTCGGCATCGACTCCCCCCTGGGCTTCTGGCTCCCCCTGACGGTCA
TCGTCTTCATCAACCTCATCTTCTTCCAGTGGGCGCGCACGCAGCCGGAG
GGCGAGTTCTTCGGCGAGTACGACGAGAGGCGGAAGTAG