mRNA_3781 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA) HSP 1 Score: 208 bits (530), Expect = 2.130e-65 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 3 Query: 21 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK 356
MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK
Sbjct: 1 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK 112
BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA) HSP 1 Score: 151 bits (381), Expect = 6.470e-43 Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 3 Query: 21 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 353
MYK L ALC++ AA +AFVAPAAPT AT MSAAPK GAIAT SAALL++AP LATEGTSEA GID+PL FW+PLTVI INLIFFQWARTQPEGEFFGEYDERR
Sbjct: 1 MYKVLLAALCMVAAA---SAFVAPAAPTAIRATTTVMSAAPKAGAIATVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 1.230e-13 Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 3 Query: 75 NAFVAPAAPTMRAATVMSMSAAPK-------VGAIATA-SAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 353
+ FVAP P + AA S +A P V +A A S A+LT+AP LATEGT E G ++ +PL +V INL+F WA+ QPEG+FF EYDERR
Sbjct: 15 SGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|12062 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCAGAAGACCAGTAGCAGCCATGTACAAGAAGGCTCTGACTGCGCTGTGCback to top protein sequence of jgi.p|Trimin1|12062 >Trimin1|12062|CE12061_1104 ID=Trimin1|12062|CE12061_1104|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASback to top mRNA from alignment at Contig_12:844387..846075- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1689bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_12:844387..846075- >mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )back to top |