mRNA_3781 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|12062
Unique NamemRNA_3781
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.130e-65
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 3 
Query:   21 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK 356
            MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK
Sbjct:    1 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERRK 112
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BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.470e-43
Identity = 84/111 (75.68%), Postives = 91/111 (81.98%), Query Frame = 3 
Query:   21 MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 353
            MYK  L ALC++ AA   +AFVAPAAPT   AT   MSAAPK GAIAT SAALL++AP LATEGTSEA GID+PL FW+PLTVI  INLIFFQWARTQPEGEFFGEYDERR
Sbjct:    1 MYKVLLAALCMVAAA---SAFVAPAAPTAIRATTTVMSAAPKAGAIATVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
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BLAST of jgi.p|Trimin1|12062 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.230e-13
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 3 
Query:   75 NAFVAPAAPTMRAATVMSMSAAPK-------VGAIATA-SAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 353
            + FVAP  P + AA   S +A P        V  +A A S A+LT+AP LATEGT E  G ++     +PL  +V INL+F  WA+ QPEG+FF EYDERR
Sbjct:   15 SGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|12062 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZAY3_9STRA2.130e-65100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z064_9STRA6.470e-4375.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G2S2_ECTSI1.230e-1347.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:844387..846075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|12062|CE12061_1104
Hectar predicted targeting categorychloroplast
TranscriptId12384
TrackFilteredModels1
ProteinId12062
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|12062gene_3781Tribonema minus UTEX_B_3156 geneContig_12 844387..846075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3781_2exon_3781_2Tribonema minus UTEX_B_3156 exonContig_12 844387..844987 -
exon_3781_1exon_3781_1Tribonema minus UTEX_B_3156 exonContig_12 845855..846075 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3781UTR3_3781Tribonema minus UTEX_B_3156 three_prime_UTRContig_12 844387..844849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3781CDS_3781Tribonema minus UTEX_B_3156 CDSContig_12 845855..846055 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3781UTR5_3781Tribonema minus UTEX_B_3156 five_prime_UTRContig_12 846056..846075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|12062Trimin1|12062|CE12061_1104Tribonema minus UTEX_B_3156 polypeptideContig_12 844850..846055 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAGAAGACCAGTAGCAGCCATGTACAAGAAGGCTCTGACTGCGCTGTGC
CTGCTGGTGGCTGCCATGGGCGCCAACGCCTTCGTGGCGCCCGCTGCGCC
CACCATGCGCGCCGCCACGGTCATGTCCATGTCCGCAGCCCCCAAGGTTG
GCGCCATTGCCACTGCCTCGGCGGCGCTGCTGACCTCCGCGCCCGTGCTT
GCCACCGAGGGCACCAGCGAGGCCTTCGGCATCGACTCCCCCCTGGGCTT
CTGGCTCCCCCTGACGGTCATCGTCTTCATCAACCTCATCTTCTTCCAGT
GGGCGCGCACGCAGCCGGAGGGCGAGTTCTTCGGCGAGTACGACGAGAGG
CGGAAGTAGACGCTTCACACCAATGACCCCGGGGGGGGGGAGGGGGGCAG
GCAGCAGAGCTGCTGCTCGGGTCAGGTTTAGCACGAACCCCCCCCCCCCC
TGACCCTGTTCACATGGAAGCCCGCGGCCGCCACGGAGAGGGGAGTGCGG
GGGGGTCCTGGCAGTTGAGCGCATGGAGCGAGGGCGGGAGAGCTCTAGCA
TTCATGAGGGTCTGCATCTGGGCCAGTGTTTCCCGCTGCCTGCCCTGGAG
AGCTGTGTGTGACGGGGGGGGAGGGGGGGCAGAGGCAGCGAGGGGCAAGG
GGGAGTTGAGCGCTGCCGTTGCTGCTTTCACAACGGAGCCACGCCACGGC
GGCCGATTTTCTCTCACCAGAGGCAAGGTGTGCCGTGTACATATATTTGG
AACTCTCCGCGGCGCCGCCGCCGCCTTGCACACCCCATAATGATAACGCA
GCATGTTTTGATTTCTGTCCGA
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protein sequence of jgi.p|Trimin1|12062

>Trimin1|12062|CE12061_1104 ID=Trimin1|12062|CE12061_1104|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
MYKKALTALCLLVAAMGANAFVAPAAPTMRAATVMSMSAAPKVGAIATAS
AALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPE
GEFFGEYDERRK*
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mRNA from alignment at Contig_12:844387..846075-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1689bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )
CCAGAAGACCAGTAGCAGCCATGTACAAGAAGGCTCTGACTGCGCTGTGC
CTGCTGGTGGCTGCCATGGGCGCCAACGCCTTCGTGGCGCCCGCTGCGCC
CACCATGCGCGCCGCCACGGTCATGTCCATGTCCGCAGCCCCCAAGGTTG
GCGCCATTGCCACTGCCTCGGCGGCGCTGCTGACCTCCGCGCCCGTGCTT
GCCACCGAGGGCACCAGCGAGGTGAGCAGCAAAAAGCCGGCCAAATGACT
GACTGGCACGTGGTGTGCATCGGATCTTTGGTGGTGCCTACACACCGACA
CAGCAGGATGCGAGTCTGACGCATGTTTTGAGACGGGAGAGCAAGATCCA
TGCGGGGCGCGCGCTGCGCCATGGATACGTGCTGCTTCGGCATCCTGAAA
CGTCTGCTGTTTCTGGGTGATTGAGGCCAGCCTGTATCTGCAGCTGATCA
TCAAGGAAGCGGAAGACCAATTGTGGCCACAGTTGGCTAGTAGATCTGTG
TGGACGCTCATACTCGTATAGCAGCAGCAGACGAAATGCCAATGCACGCA
GCTCATGCTTTCAGCTTAAAGTTGCCAACATAGGTGTTCTGGCAATGTTT
GTCAAGCTGGTGCTGTGCTGCTGCCGATGGCAGTCAGAGCCTTTGGATCT
TTCCCTGGCTCGCCTGCAGTCGTTCACACAATGTTGGCTGGTGCCAATGC
AGCACTGTCACTCTCTAGCACTCCAGCTCATGTGGTGAGTTCTCGAGCGT
GGTCATCATGCCATTGCTGTGTTGCATGCGATGCCGCAACAGCAGAGCAG
ATCTCGCAGTTGACGATGCAGAAAGTGTGCCCTGCAACAGGGAGTTCGCC
ATGTTTGCAGCAGCAGTCCGCCTTGTGGCTGGCTGACAGCGTGCGCGTCA
CGCGGTGTCACGCAGCCGCCTCAGCGGCGTGGGTTCCCACCTCAGCTAGC
TGCCTGAAATTCACCGCTGATGCGAGTTGAAGTGAATGGTGCACACTTGC
ACTCATGCAGTCTAGTGACGCCTGCTGCCTGCCATCTCATTTCGCCGTCG
TCCCACTGACCCCCCCCCCTTCCCTCCCCCCCTTTCAGGCCTTCGGCATC
GACTCCCCCCTGGGCTTCTGGCTCCCCCTGACGGTCATCGTCTTCATCAA
CCTCATCTTCTTCCAGTGGGCGCGCACGCAGCCGGAGGGCGAGTTCTTCG
GCGAGTACGACGAGAGGCGGAAGTAGACGCTTCACACCAATGACCCCGGG
GGGGGGGAGGGGGGCAGGCAGCAGAGCTGCTGCTCGGGTCAGGTTTAGCA
CGAACCCCCCCCCCCCCTGACCCTGTTCACATGGAAGCCCGCGGCCGCCA
CGGAGAGGGGAGTGCGGGGGGGTCCTGGCAGTTGAGCGCATGGAGCGAGG
GCGGGAGAGCTCTAGCATTCATGAGGGTCTGCATCTGGGCCAGTGTTTCC
CGCTGCCTGCCCTGGAGAGCTGTGTGTGACGGGGGGGGAGGGGGGGCAGA
GGCAGCGAGGGGCAAGGGGGAGTTGAGCGCTGCCGTTGCTGCTTTCACAA
CGGAGCCACGCCACGGCGGCCGATTTTCTCTCACCAGAGGCAAGGTGTGC
CGTGTACATATATTTGGAACTCTCCGCGGCGCCGCCGCCGCCTTGCACAC
CCCATAATGATAACGCAGCATGTTTTGATTTCTGTCCGA
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Coding sequence (CDS) from alignment at Contig_12:844387..846075-

>mRNA_3781 ID=mRNA_3781|Name=jgi.p|Trimin1|12062|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_12:844387..846075- (Tribonema minus UTEX_B_3156 )
ATGTACAAGAAGGCTCTGACTGCGCTGTGCCTGCTGGTGGCTGCCATGGG
CGCCAACGCCTTCGTGGCGCCCGCTGCGCCCACCATGCGCGCCGCCACGG
TCATGTCCATGTCCGCAGCCCCCAAGGTTGGCGCCATTGCCACTGCCTCG
GCGGCGCTGCTGACCTCCGCGCCCGTGCTTGCCACCGAGGGCACCAGCGA
GGCCTTCGGCATCGACTCCCCCCTGGGCTTCTGGCTCCCCCTGACGGTCA
TCGTCTTCATCAACCTCATCTTCTTCCAGTGGGCGCGCACGCAGCCGGAG
GGCGAGTTCTTCGGCGAGTACGACGAGAGGCGGAAGTAG
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