mRNA_3715 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|160148
Unique Name	mRNA_3715
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|160148 vs. uniprot
Match: A0A835ZDB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDB3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.430e-43
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1

Query:    1 MDAATCAVAARNGHLHSLQWLREQGCEWDERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAGLQIDSDEISAAAAERGHLEALQWLLARGCPVSWRAAVAAARGGHLQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCVLRY 483
            MDAATCAVAARNGHLHSLQWLREQGCEWDERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAGLQIDSDEISAAAAERGHLEALQWLLARGCPVSWRAAVAAARGGHLQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCVLRY
Sbjct:    1 MDAATCAVAARNGHLHSLQWLREQGCEWDERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAGLQIDSDEISAAAAERGHLEALQWLLARGCPVSWRAAVAAARGGHLQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCVLRY 161

[Close]

BLAST of jgi.p|Trimin1|160148 vs. uniprot
Match: A0A835ZLA1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLA1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-9
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1

Query:  229 DAGLQIDSDEISAAAAERGHLEALQWLLARGCPVSWRAAVA 351
            +AGLQ+DS+ +  AAAERGHLEALQWL ARGCPVSW+AA+A
Sbjct:   32 EAGLQMDSEGVGTAAAERGHLEALQWLRARGCPVSWKAALA 72

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|160148 vs. uniprot

BLAST of jgi.p|Trimin1|160148 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZDB3_9STRA	1.430e-43	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZLA1_9STRA	1.700e-9	75.61	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_12	contig	Contig_12:306397..310274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|160148\|e_gw1.12.87.1
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-00_002270.1
TranscriptId	160470
Track	FilteredModels1
ProteinId	160148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160148	gene_3715	Tribonema minus UTEX_B_3156	gene	Contig_12 306397..310274 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3715_1	exon_3715_1	Tribonema minus UTEX_B_3156	exon	Contig_12 306397..306771 +
exon_3715_2	exon_3715_2	Tribonema minus UTEX_B_3156	exon	Contig_12 306838..307014 +
exon_3715_3	exon_3715_3	Tribonema minus UTEX_B_3156	exon	Contig_12 307638..307750 +
exon_3715_4	exon_3715_4	Tribonema minus UTEX_B_3156	exon	Contig_12 310073..310274 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3715	CDS_3715	Tribonema minus UTEX_B_3156	CDS	Contig_12 306397..306771 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160148	Trimin1\|160148\|e_gw1.12.87.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_12 306397..310274 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_12:306397..310274+
coding sequence from alignment at Contig_12:306397..310274+

spliced messenger RNA

>mRNA_3715 ID=mRNA_3715|Name=jgi.p|Trimin1|160148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_12:306397..310274+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTGCTACTTGTGCTGTGGCCGCCCGCAACGGCCACCTGCACTC
GCTGCAGTGGCTGCGCGAGCAGGGCTGCGAGTGGGACGAGCGTGCGTGCA
GCGAGGCGGCGAGGAGGGGAGATCTTGCCATGCTGCAGTGGGCTCGCGCT
CACAATTGCCCCTGGGACAGCACTACGGCAACGGAGATAGCAAGGAGGGG
AGACCTCACGATGCTGGAGTGGGCTGCAGACGCTGGTCTTCAGATAGACT
CTGATGAGATAAGCGCTGCTGCGGCGGAACGAGGGCATCTGGAGGCGCTG
CAGTGGCTGCTTGCGCGCGGCTGTCCTGTGAGCTGGCGGGCTGCTGTTGC
AGCGGCGCGGGGTGGGCACTTGCAGACAGGCCAATTAAAAGTAGTCAAAT
GGCTGAACTCTCTGGGGTGCGCGTGGCACAGCGAAATCTGCACAGCAGCA
GCTAGGGGCGGCCACCTTTGCGTACTGCGGTATCTGCGCACCAACGGCTG
CCCCTCGAATGCGAGCATCCTCTCGGCGGCAGTATGTGGCGGGCATATAG
AGGTGCTTGAGTGGGCGCTTCCAAACAGGTGCGAGTGGAACGAGTCCCTG
TGCCGTAGAGCAGCAAAGCGATGGGAAACAGCCGTTGTAGACTGGGCGGC
GGCGCGCGGGTGCACCATGAGTGCTGCGACCTGCGCCGTGGCCGCCCGCA
AAGGCCCCCTGCGTTCGCTGCAGTGGCTGCGCAAGCAGGGCTGCGAGTGG
GACGAGCGCACGTGCAGCGAGGCGGCAAGGAGGGGAGATGTCGCCATGCT
TCAGTGGGCTCGTGCTCACAACTGCCCATGGGACAGAACTACAGCAACGG
AGCTAGCAAGGAGATGA

protein sequence of jgi.p|Trimin1|160148

>Trimin1|160148|e_gw1.12.87.1 ID=Trimin1|160148|e_gw1.12.87.1|Name=jgi.p|Trimin1|160148|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=289bp
MDAATCAVAARNGHLHSLQWLREQGCEWDERACSEAARRGDLAMLQWARA
HNCPWDSTTATEIARRGDLTMLEWAADAGLQIDSDEISAAAAERGHLEAL
QWLLARGCPVSWRAAVAAARGGHLQTGQLKVVKWLNSLGCAWHSEICTAA
ARGGHLCVLRYLRTNGCPSNASILSAAVCGGHIEVLEWALPNRCEWNESL
CRRAAKRWETAVVDWAAARGCTMSAATCAVAARKGPLRSLQWLRKQGCEW
DERTCSEAARRGDVAMLQWARAHNCPWDRTTATELARR*

mRNA from alignment at Contig_12:306397..310274+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3715 ID=mRNA_3715|Name=jgi.p|Trimin1|160148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3878bp|location=Sequence derived from alignment at Contig_12:306397..310274+ (Tribonema minus UTEX_B_3156 )
ATGGACGCTGCTACTTGTGCTGTGGCCGCCCGCAACGGCCACCTGCACTC
GCTGCAGTGGCTGCGCGAGCAGGGCTGCGAGTGGGACGAGCGTGCGTGCA
GCGAGGCGGCGAGGAGGGGAGATCTTGCCATGCTGCAGTGGGCTCGCGCT
CACAATTGCCCCTGGGACAGCACTACGGCAACGGAGATAGCAAGGAGGGG
AGACCTCACGATGCTGGAGTGGGCTGCAGACGCTGGTCTTCAGATAGACT
CTGATGAGATAAGCGCTGCTGCGGCGGAACGAGGGCATCTGGAGGCGCTG
CAGTGGCTGCTTGCGCGCGGCTGTCCTGTGAGCTGGCGGGCTGCTGTTGC
AGCGGCGCGGGGTGGGCACTTGCAGGTACTGCAGTCTATCAGTTCTGAGG
CCCTGGCCAATCACTTCGTCACCTGTGTTGCAGCTGCAGAGACAGGCCAA
TTAAAAGTAGTCAAATGGCTGAACTCTCTGGGGTGCGCGTGGCACAGCGA
AATCTGCACAGCAGCAGCTAGGGGCGGCCACCTTTGCGTACTGCGGTATC
TGCGCACCAACGGCTGCCCCTCGAATGCGAGCATCCTCTCGGCGGCAGTA
TGTGGCGGGCATATAGAGGTGCTGCGCTATGTCAGAGAGCAGGGCCACAA
ACTGCAACGTGCGGGTCAACTGAGCAGGCGGCGGAGGCAGGCAGCCTAGC
GGTACTGCAGTGGACTATTGAGAATGACTGTGGCTGGGATAAGTCTGTAT
GTGGAATTGCCGCAAGAAAGGGGGATGTTGAGATGCTCGAGTGGGCTGTG
GCCCATGACGCTTACTTCAACTCTGACAACGTAGCACTTAATGCCGGCAA
GGCGGGTCAATTGTCAATCGCAATGTGGCTTCTCGCACACAAGAAGCAGT
CTATCCACCTTCTATTACTACAGGCGGTACAGGCGGGGCATGTCTCCCTC
CTGCAGTGGGCTCAGTCGAAGGGCGTTTTTGCCAAGGAGAAGCTGCAGTA
CGCGTACTATTCAGGTCAGACCAATCAAGTCGAGGTACTGGCGTGGATGC
TTGCCGCCGGTCACCTCGTGCCAGGATGTTCGCCGTTTGCGTCGCCCAGC
GGATGCGTAGACGGGCACAACAACCCTGCCGCAGGCGCAGCGTTGAGGGG
TCACATGCGCGTACTGAAGTGGCTCAGGGCCCACAGTCTCTTCGACACAC
ACTGTGTACTTGAAAATGCGGCGAGGTACCAGCAGTTTGAGGTGCTTGAG
TGGGCGCTTCCAAACAGGTGCGAGTGGAACGAGTCCCTGTGCCGTAGAGC
AGCAAAGCGATGGGAAACAGCCGTTGTAGACTGGGCGGCGGCGCGCGGGT
GCACGTGTGCCGCTCACAGCAGCGCCTTGATGCACGCATGCCTGTCCTGA
CACGATTACTAGCTGCTTCTGCAACAAGTATTAACTTGTCATTGATGATG
CGTCCAGCCAATTACTGCTCAGGTCTTCATGTGTTGGCATAGTTCCATCT
GCGTGTCAAACTTTTACTTGATATTCTCGAAGCATGGTTGATATTGACAA
TGGCCATGCAAACAGCATGCGCAAATTTGCTGCAGAGGCGTATGGCCACC
CAAACGAGAAGCATGCCTGCCAAGATCTCGTGTTGCAGTGCTGTGTGCAT
ACGCAGGAGAGCATGTTGGCGTACATCACTTGCATTCTGTCAAGACAAAC
TCTATTATGTGGTATGTCGCCGCTCATGACTGGCTGGCACAACGCTTATG
GTATACCAACTGAGGCCTTGTCGAGGGCGCTGAGCAATGGGAATTGCGGC
AATGTGTTGCATTCATAATATTAGTTCTCGTTGCGCTGTGCAGTGTGTGT
TCACAACACAAAGATCACACTTGCCTGTCAATGGTGGTGCACCATATGGC
ATCCATTATAATGAATTGTTGCCGGACGTGCTCAACTTGGTCGCCATAAT
CAATGTTTCCTGTGATCTAAAAATCTCCTACACTCATGTTTTAGTAAATC
AGCTTGGCATAAGGGAAATCATCGGGTTCCTTCTTCACAGGGAGCATAAA
TCGAGTTTGAAGTTCCACGTCAAGGCCTGCAAGCAAAGCTTTGGAAGATT
TGTGGAGCTGAGTAGCCGGCGGAGGTGCACAATGATGTCAAGCAGTAGTG
TGCAGCCTCCACATTGGCATCGGGATTTAACATTTGCTGCATGCTGTTGT
GCCGATCTAGTTGATAGAAGTGTAACGGAGAACTCACTTTCAAAGGCTTG
TGTAAGAAAACCATGTCCAATCAATGGGTCTGGGAGTAAACACGGCTGCG
TCAGCAACCCACTGGCAGCACCAGCAGGGGCGCCGCATCAAGTTCAACTT
TTGTGCATACATGACTGCCCGCTGCACCGCGCTCACGGCGCTGCTGCTCA
TTCAGCTGGAGAAGAGCTGCGGCTGTGCGGGCCTTGCTGCGCTGTTGCCC
CAACGGCATGCTGACCATCCCCGTGTTCAAGCGCAAGAGCACTATTGTGT
TGTGGGCGACGGAAAAGTCGTTAGGCCTCTGCTCGGCCGCATCATCGTCA
GGAGCTCGCCGTGCACTCGTGCCTCGTGCGCTTCCGAAGTTCATTACGCC
CGATGATCACAAACAGCTAGCCAGAGTGCATGGCGACAATCGCGAGCATC
ATCTTGGACTCCAGTGGCCGCTTCCTCCGCGACATCCGCGCTTATAGTGT
GTGGCTACACACACGCATGGACCAAGTACTTCTATGTGCTTTCTGCACTC
AGCGCTTGACTGACTCGCCGAAGGGAATGCAGGTTGATGTGTATGTATAC
AGACCGAGTACAACTGCCTATAAGGACGCTTCCCGCTGGCAACATCATGT
GCGTTTCTAGAGCTACAGGTCTGCACACGTCTGCTGAACAGACTGCCTAT
TTACGCGGCGGCCAGCAAGTCCTTTGCACAGATCTTGTACCTAGTTTCGC
TGCCGACTCGGAGCTGCTTGGACCTGCCATTAATGAGGCCTGGCGTGAGA
TGATGCATGCACTGTGCTGGCCTGTCGGTTCGACAACGCATCACCAGACG
ATCCCCCTGATGTCCCGGTACACTGCGCATCCAGCGACCCATCCGCCAAA
TGTGGCAGTGCCTAATGCTGCCCATGCTGATTGATCAGCGTGGCCTGCAG
CAACAGCGTGGTGATTTGATGGAAGCTCACTTCTTCTGCCCTCCTGCTGC
GACACTCGTGCAAGTGGTCATCAGCACGCAGACGGCGACCATCAGTCGTC
CGATCGGTCATCCGGTTCTGCATCTTTTTCATCGAAAACTTCAACATCTG
AACTTCAACAGCTCAATTGGCCAAGAGAAGCGGTGGTGCTGCGGAACTGA
CTGCCACCTACAGAGCACACACGGGCCCAGCAAGTACACGAACCAGCAAA
GCGTAGCCACCCATGGCATCTTCTAAGAAACAGGGTTGAGGAGAGGCAAG
AGAATTGCTCCGTAGCAGCCACCACAGACAGCCTCAATAAAGCCTGCCTG
CAGCAGATATTCTCGCTGGTAGGCCCAGGCCACTACATACTCCTGGCATG
CTGCAAGCGCTGGCAGCATATCTACTGGCTATACGGCCAGTATAAAATGC
AGACTGCCGTGCAGCACGTCGTTGCCGAGCTGCCGCTGCTTCAATGGGCT
GTCCATGCGGATGGTGGAGGCCATAGCATGAGTGCTGCGACCTGCGCCGT
GGCCGCCCGCAAAGGCCCCCTGCGTTCGCTGCAGTGGCTGCGCAAGCAGG
GCTGCGAGTGGGACGAGCGCACGTGCAGCGAGGCGGCAAGGAGGGGAGAT
GTCGCCATGCTTCAGTGGGCTCGTGCTCACAACTGCCCATGGGACAGAAC
TACAGCAACGGAGCTAGCAAGGAGATGA

Coding sequence (CDS) from alignment at Contig_12:306397..310274+

>mRNA_3715 ID=mRNA_3715|Name=jgi.p|Trimin1|160148|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=867bp|location=Sequence derived from alignment at Contig_12:306397..310274+ (Tribonema minus UTEX_B_3156 )
ATGGACGCTGCTACTTGTGCTGTGGCCGCCCGCAACGGCCACCTGCACTC
GCTGCAGTGGCTGCGCGAGCAGGGCTGCGAGTGGGACGAGCGTGCGTGCA
GCGAGGCGGCGAGGAGGGGAGATCTTGCCATGCTGCAGTGGGCTCGCGCT
CACAATTGCCCCTGGGACAGCACTACGGCAACGGAGATAGCAAGGAGGGG
AGACCTCACGATGCTGGAGTGGGCTGCAGACGCTGGTCTTCAGATAGACT
CTGATGAGATAAGCGCTGCTGCGGCGGAACGAGGGCATCTGGAGGCGCTG
CAGTGGCTGCTTGCGCGCGGCTGTCCTGTGAGCTGGCGGGCTGCTGTTGC
AGCGGCGCGGGGTGGGCACTTGCAGACAGGCCAATTAAAAGTAGTCAAAT
GGCTGAACTCTCTGGGGTGCGCGTGGCACAGCGAAATCTGCACAGCAGCA
GCTAGGGGCGGCCACCTTTGCGTACTGCGGTATCTGCGCACCAACGGCTG
CCCCTCGAATGCGAGCATCCTCTCGGCGGCAGTATGTGGCGGGCATATAG
AGGTGCTTGAGTGGGCGCTTCCAAACAGGTGCGAGTGGAACGAGTCCCTG
TGCCGTAGAGCAGCAAAGCGATGGGAAACAGCCGTTGTAGACTGGGCGGC
GGCGCGCGGGTGCACCATGAGTGCTGCGACCTGCGCCGTGGCCGCCCGCA
AAGGCCCCCTGCGTTCGCTGCAGTGGCTGCGCAAGCAGGGCTGCGAGTGG
GACGAGCGCACGTGCAGCGAGGCGGCAAGGAGGGGAGATGTCGCCATGCT
TCAGTGGGCTCGTGCTCACAACTGCCCATGGGACAGAACTACAGCAACGG
AGCTAGCAAGGAGATGA