mRNA_3711 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|160219
Unique Name	mRNA_3711
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|160219 vs. uniprot
Match: A0A836CMN1_9STRA (Cysteine-rich protein with zinc finger protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.370e-5
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 1

Query:    1 MPAGLCEHGRQRHMCKDCGGAD 66
            MPAGLCEHGRQRHMCKDCGGAD
Sbjct:    1 MPAGLCEHGRQRHMCKDCGGAD 22

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|160219 vs. uniprot

BLAST of jgi.p|Trimin1|160219 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CMN1_9STRA	4.370e-5	100.00	Cysteine-rich protein with zinc finger protein n=1...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_12	contig	Contig_12:263987..267890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|160219\|e_gw1.12.112.1
Hectar predicted targeting category	other localisation
TranscriptId	160541
Track	FilteredModels1
ProteinId	160219

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160219	gene_3711	Tribonema minus UTEX_B_3156	gene	Contig_12 263987..267890 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_3711_1	exon_3711_1	Tribonema minus UTEX_B_3156	exon	Contig_12 263987..264482 +
exon_3711_2	exon_3711_2	Tribonema minus UTEX_B_3156	exon	Contig_12 264933..264937 +
exon_3711_3	exon_3711_3	Tribonema minus UTEX_B_3156	exon	Contig_12 267507..267890 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_3711	CDS_3711	Tribonema minus UTEX_B_3156	CDS	Contig_12 263987..264482 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|160219	Trimin1\|160219\|e_gw1.12.112.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_12 263987..267890 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_12:263987..267890+
coding sequence from alignment at Contig_12:263987..267890+

spliced messenger RNA

>mRNA_3711 ID=mRNA_3711|Name=jgi.p|Trimin1|160219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=885bp|location=Sequence derived from alignment at Contig_12:263987..267890+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCGGGCCTGTGCGAGCACGGAAGGCAGCGCCACATGTGCAAGGA
CTGCGGCGGCGCGGACATTTGCCGGCACGGCAGGAGACGCAGCGGCTGCA
GGGACTGTGGCGGCGGGCACATCTGCGAGCACGACCGGGAGCGCCGCAAG
TGCACGCTCTGCAGCGGCTCTTCCATCTGCGCACACGGGCGGCGGCGCTA
CTACTGCAAGGACTGCGGCGGCAAAGGCATCTGCGAGCACGGACACTACC
GCTCAGGGTGCAAGGGGCGCCGCAGCAGTGCCGTCTGCTTACACGGGCAC
TGGCGCGTGCAGTGCACGGAGTGCGGCGGCACTTCCATTTGCGCACACGG
GCGGCGGCGCTTCCACTGCAAGGACTGCGGGGGGTTGGGCATTTGTGTGC
ACGGCAGGCGGCAGTCCTACTGCAGGGATTGCGGTGGCAGGGGCATCTGT
GACCACGGCAAGCGGGGCACCTCCTGCAAGGACTGCAAGCAGCGCCTGCT
TTGCCCGCACAACAGGCAGCGGTACTACTGCAAGCCCTGTGGCGGCAAGG
GAATCTGCAAACACGACAGGATTCGCAGCAGCTGCAAGGACTGCGGCGGC
GGCGGGCTGTGCAAGCACAGCAGGCAGCGCCACAGGTGCAAAGACTGCGG
CGGCAGGGGTATATGCCGGCACGGCACGAGACACAGCGGCTGCAGGGACT
GTGGCGGCGGGCAAATCTGCGAGCACGACCGGGAGCGGCGCAAGTGCACG
TACTGCGGGGGGTCGAGCATCTGCGTGCACGGCAGGCGGCGCTACTACTG
CGGGGATTGCGGTGGCAGGGGCATGTGTGTACACGGCAAGCGGCGCGTCT
CCTGCAAGGACTGCGAGCAGCGCCGCGGTACATGA

protein sequence of jgi.p|Trimin1|160219

>Trimin1|160219|e_gw1.12.112.1 ID=Trimin1|160219|e_gw1.12.112.1|Name=jgi.p|Trimin1|160219|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=295bp
MPAGLCEHGRQRHMCKDCGGADICRHGRRRSGCRDCGGGHICEHDRERRK
CTLCSGSSICAHGRRRYYCKDCGGKGICEHGHYRSGCKGRRSSAVCLHGH
WRVQCTECGGTSICAHGRRRFHCKDCGGLGICVHGRRQSYCRDCGGRGIC
DHGKRGTSCKDCKQRLLCPHNRQRYYCKPCGGKGICKHDRIRSSCKDCGG
GGLCKHSRQRHRCKDCGGRGICRHGTRHSGCRDCGGGQICEHDRERRKCT
YCGGSSICVHGRRRYYCGDCGGRGMCVHGKRRVSCKDCEQRRGT*

mRNA from alignment at Contig_12:263987..267890+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3711 ID=mRNA_3711|Name=jgi.p|Trimin1|160219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3904bp|location=Sequence derived from alignment at Contig_12:263987..267890+ (Tribonema minus UTEX_B_3156 )
ATGCCGGCGGGCCTGTGCGAGCACGGAAGGCAGCGCCACATGTGCAAGGA
CTGCGGCGGCGCGGACATTTGCCGGCACGGCAGGAGACGCAGCGGCTGCA
GGGACTGTGGCGGCGGGCACATCTGCGAGCACGACCGGGAGCGCCGCAAG
TGCACGCTCTGCAGCGGCTCTTCCATCTGCGCACACGGGCGGCGGCGCTA
CTACTGCAAGGACTGCGGCGGCAAAGGCATCTGCGAGCACGGACACTACC
GCTCAGGGTGCAAGGGGCGCCGCAGCAGTGCCGTCTGCTTACACGGGCAC
TGGCGCGTGCAGTGCACGGAGTGCGGCGGCACTTCCATTTGCGCACACGG
GCGGCGGCGCTTCCACTGCAAGGACTGCGGGGGGTTGGGCATTTGTGTGC
ACGGCAGGCGGCAGTCCTACTGCAGGGATTGCGGTGGCAGGGGCATCTGT
GACCACGGCAAGCGGGGCACCTCCTGCAAGGACTGCAAGCAGCGCCGTGA
TGCATGAAAACACTTCCTGACTTAGTCTATCTCTTCCGGAAGTGCCCCAA
TTGCCACAATTCGGAAGTGCCACAATTCGACACAGCCTCTGTCAAAGTCT
ACCTGCTTCTTACTTTCTGTTGCTCATCTGCCGTACTGGTGGTCAGGATG
CCGCGCAATATGCACTTGAGCATACACAATGAAATGCGCAAAAAGCAGTT
TGATCCTAGGTTTCGGCATGGCTGCGCGATGACAATCAGGCATTGACCAG
CACAGCTCACCTGCAGACCCTGCTGGTTTGCCCATGCCGAGCACTGGTTG
AAGTCATGAAATGCATGCAGTGGCGTTCTTGCTTATGCTTGGGCTGTCTC
ACCTGTGGGGGTCTAGACCCCTTTGTTCCAGCAGCTGAGAAACAGTGCTT
GTAGCAGGTCAGACTGGTTGACTGTCAGATTGCAATGACCTCGAAGTGCT
TGTATTCTTTTCTGAAAGACAGAGAGTTTACGCACTTGAACCGACCGTTG
ACCTTCACTAGTGACAGAGAAGCAGGGTCGCCAATACCCTAGTAGTGACA
TACATACCTGCCCTAAGCCTGTGCGTCGGGCGTGATGGTGAGCTGTGCTC
TCACCTCGTGGCGGCATGCAGTTCGCGTCGCGTGCATGAAGTGATGTTCT
GGACAGCAGCGCAGGCAGGCACAGAAGCTGGTCATACCTCTAAAAAATGT
GTTGACACAGCGTCATGTCATTTAATACCACAGTGGCTTTCACCCTCGGT
TTCCGGCATCATATCCATGCCAAGCTTTGAATCTGCTCGGCGCACGGGTA
AGAAAAGACAGCCAACCCAAAGCTGAGTGGCGAAGGCCACGAGCCTTGCA
GCGTCTATGCGGCAGCGCGTGATGCAGTAATCATTCCGCACACCCATGTG
TGCGCCAGGCGCAGCCGCTGTCACCGCCGCTGCAGCACCGTTGCGCAGTG
CTCGGCAGCAATTTCTTGCAGCGGTGCGTGGCGGCGGCAGCGGCAGCAGC
AGCGGGCCTCAGCAGCAGCGGCCGCAGGCACTGACGTGCATCAGTGCTCA
GCATTTAGCAGCAGCAGTTCAACAGCAGCAGCGGCGGCAGCAGCAGCTGC
AGAGCTCAACAGCAGCAGTAGCAGCAGCGCTCATCCGTCGCCCGCCATCT
CGGCCAGCTCCATCCGCCGCTCGATCTTGGAGTCGACCTCTGCTGCCAGC
TTGGTCAGCTGCGCGGACCACTGCGGTGCGGTGGTGAGCGCAAGGGACAG
CGCAGAAGATTGCCCCTAAGGTCGTAGCTCAAGTATCTTGCGGCGCTGTG
TGTACTCTTTGTTGATGCTCGCTCTGAGCGCGAAACAGCCCATCGATGTC
AGGTTTGCTACCAGAATATACTTGTAGTTTGCCTTGTGACAAAGTGTCTC
AATGCCAGGAATTGATCATGGCTCTGGAGGACCATGGCTCTGGATGACAT
CGCCAAACTGTTACGTAGCGTCAACGCGGCGCCTGTACTCGTTGCGGCTG
CGACGTATCTACACGCGCACCGATGATAAAACATAGACCACATCAGGGAG
CATGGGCGTGCAGCAGCCCAAGGGTGCCAGGTGGAGCCTAGAGAGGAAAG
TCACAGTGTGAAACTTGCCGTTGAACACAGTATTCACACCGCCGCGGTCG
GTCAGTCACCTGGCAAACAGGCGTGTCATGTGCCTGCACGTAGCTTCAAG
TGCCTGCACGTAAGCTTCAAGGTTGAACGAGAGACGCCACTCACAGGACT
CAACAGGGTCGGCTAGTAGCTGGAGGCACTCCCACAGGTACAGCGCAGAT
GATGCCGGCGGTAGGTGGTGACGGTGCGCGCGACAGGAGTCAAGGTCCGT
CGCTAGCGCAGCGAGGTAGAGCGCTCATGGCGCAGCTGGCGGAGTTCCTG
CAGGGATGTGAGCAGCACGAAGAGCAACAGCAGCAGTCGCAGCAGCGTCA
GCAGCAGCAACGCCGGCAGGACGAGCAACAGCAGCGACACTTGATGAGAC
TAGTGCTGGAGGACGTCCGGCAGCTGCAGACAACAACTCAGAACCTGGAG
GATGCGCACGGTGTCGCGGTCCGACACCTCCAACGGCAAAACGAGCGGCT
GCGGGAGCTGGAAGAGGTGAACGAGCAGCAGAGGGCCGCGAGCGAGGAGC
AGCACGCCAGGCTGCGTCAGCTTGAACAGAACAGGCAGCTGCGAATCGCA
ATCGGAAGTCAGCGTGTGACGGAGGCTGAGCAGCACCGGCAACGTCAGGT
CTCGGTCGCGGTGCAGACGATACATGGGGCGGACACTAGGGCGCAGCAGG
GGGCAAGCATGCTCTCAGGGGGCGTTCGAGTCGACTCGCCGCAACCGCCG
TCAGGGAACCATAAATCGCAGCCGCCAACGACAGCAACTAACAGCAGCAG
TGGCGGCGACAACGCCCGCACAGCCGCTGACGCCGGAGTGGTGAGGGGGG
CGTTGCCTGCGCATGACAACGGCGGCGGCGGCGGCGATGACTACTGCAGC
GGCGGCGACTGCGGCGTCCACTTGCCGGACGACGACATGGAAGTTGAAGT
TGACAGCAGCATCGGCAGAGAGGAAGCTGAGGACAGCTGCCAAGACAGTG
AGACGGACACCGACGCTGATGGCGCCTGCAGCGGCGGCTCACACGCATCC
GACGGCACCTACGTCGACAGCGACTCCGGAGAGAGTGCGGGCAGCACATG
CGACGAGGGTTCGGCGGGCGACGGCGGCAGCGGCGCCAGCAGCGACACCT
CCGACTCCGACAGCAGCGACGACGGCGAGCCGGCGAGGAAACGCGCACGC
ACCGCCGGTGCCGCGAATGGCACACCTCGCCAACGTGCAGCAGCCGCATC
CAGTGCGTCGCAACCGCGCGCTCGTGCTGGCAGCGTTGACTGTGCAGCGG
CGACAGGGAGGGCGCAGGGCATAGGGGGTGCCAAGCGCTCGCGGCCGCAG
CCGCCACGCAGGAAGTGCCCGCACAACAGGCAGCGGTACTACTGCAAGCC
CGCAGCCGCCACGCAAGAAGTGCCCGCACAACAGGCAGCGGTACTACTGC
AAGCCCTGTGGCGGCAAGGGAATCTGCAAACACGACAGGATTCGCAGCAG
CTGCAAGGACTGCGGCGGCGGCGGGCTGTGCAAGCACAGCAGGCAGCGCC
ACAGGTGCAAAGACTGCGGCGGCAGGGGTATATGCCGGCACGGCACGAGA
CACAGCGGCTGCAGGGACTGTGGCGGCGGGCAAATCTGCGAGCACGACCG
GGAGCGGCGCAAGTGCACGTACTGCGGGGGGTCGAGCATCTGCGTGCACG
GCAGGCGGCGCTACTACTGCGGGGATTGCGGTGGCAGGGGCATGTGTGTA
CACGGCAAGCGGCGCGTCTCCTGCAAGGACTGCGAGCAGCGCCGCGGTAC
ATGA

Coding sequence (CDS) from alignment at Contig_12:263987..267890+

>mRNA_3711 ID=mRNA_3711|Name=jgi.p|Trimin1|160219|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=885bp|location=Sequence derived from alignment at Contig_12:263987..267890+ (Tribonema minus UTEX_B_3156 )
ATGCCGGCGGGCCTGTGCGAGCACGGAAGGCAGCGCCACATGTGCAAGGA
CTGCGGCGGCGCGGACATTTGCCGGCACGGCAGGAGACGCAGCGGCTGCA
GGGACTGTGGCGGCGGGCACATCTGCGAGCACGACCGGGAGCGCCGCAAG
TGCACGCTCTGCAGCGGCTCTTCCATCTGCGCACACGGGCGGCGGCGCTA
CTACTGCAAGGACTGCGGCGGCAAAGGCATCTGCGAGCACGGACACTACC
GCTCAGGGTGCAAGGGGCGCCGCAGCAGTGCCGTCTGCTTACACGGGCAC
TGGCGCGTGCAGTGCACGGAGTGCGGCGGCACTTCCATTTGCGCACACGG
GCGGCGGCGCTTCCACTGCAAGGACTGCGGGGGGTTGGGCATTTGTGTGC
ACGGCAGGCGGCAGTCCTACTGCAGGGATTGCGGTGGCAGGGGCATCTGT
GACCACGGCAAGCGGGGCACCTCCTGCAAGGACTGCAAGCAGCGCCTGCT
TTGCCCGCACAACAGGCAGCGGTACTACTGCAAGCCCTGTGGCGGCAAGG
GAATCTGCAAACACGACAGGATTCGCAGCAGCTGCAAGGACTGCGGCGGC
GGCGGGCTGTGCAAGCACAGCAGGCAGCGCCACAGGTGCAAAGACTGCGG
CGGCAGGGGTATATGCCGGCACGGCACGAGACACAGCGGCTGCAGGGACT
GTGGCGGCGGGCAAATCTGCGAGCACGACCGGGAGCGGCGCAAGTGCACG
TACTGCGGGGGGTCGAGCATCTGCGTGCACGGCAGGCGGCGCTACTACTG
CGGGGATTGCGGTGGCAGGGGCATGTGTGTACACGGCAAGCGGCGCGTCT
CCTGCAAGGACTGCGAGCAGCGCCGCGGTACATGA