mRNA_3705 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160126
Unique NamemRNA_3705
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A835ZHY3_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY3_9STRA)

HSP 1 Score: 235 bits (599), Expect = 4.400e-78
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 1 
Query:    1 MSKPLLVLGCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKFGKGGDEGXXXXXXXGGSS 378
            MSKPLLVLGCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKFGKGGDEGXXXXXX GGSS
Sbjct:    1 MSKPLLVLGCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKFGKGGDEGXXXXXXEGGSS 126
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A835ZBL6_9STRA (Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL6_9STRA)

HSP 1 Score: 184 bits (468), Expect = 8.900e-58
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:   31 RVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIA 309
            RVKEKVED+VQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIA
Sbjct:   58 RVKEKVEDQVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIA 150
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: D8LIY1_ECTSI (ClpS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIY1_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 6.260e-50
Identity = 85/106 (80.19%), Postives = 97/106 (91.51%), Query Frame = 1 
Query:   34 VKEKVEDKVQ--RKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKFGKGGDEG 345
            VKEKV++ V+   KE+LDKE+WWRVILHND+IHTFDYVT SITKVVKKLTMK AYE+TMETHK+GKATVTQAWKS++E+YCL LQQCGLTASIAPDSKF +GG EG
Sbjct:   91 VKEKVKEMVEVDNKEELDKEQWWRVILHNDEIHTFDYVTQSITKVVKKLTMKKAYEVTMETHKSGKATVTQAWKSKSESYCLQLQQCGLTASIAPDSKF-EGGGEG 195
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A7S1RIS0_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RIS0_ALECA)

HSP 1 Score: 132 bits (333), Expect = 1.190e-36
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:   25 GCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKF--GKGG 336
            G  + EK++ K Q KEQ DKEKWWRV+LHNDDIHTF+YVT  +T++V  LT + AY IT E H +GKATV   WKS +E YC+ LQQ GLT SIAPDSKF   KGG
Sbjct:   91 GIALDEKIDRKQQMKEQFDKEKWWRVLLHNDDIHTFEYVTGCLTRIVPHLTRRKAYNITWEAHSSGKATVACVWKSLSEQYCVNLQQLGLTVSIAPDSKFEGNKGG 196
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A812W203_9DINO (CPLS1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812W203_9DINO)

HSP 1 Score: 128 bits (321), Expect = 3.140e-35
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:   25 GCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKF--GKGG 336
            G  V EKV+ K Q KEQ +KEKWWRV+LHNDDIHTF+YVT  + KVV+ L+ + AY IT E H +GKATV   WK+ AE +C+ LQQ GLT SIAPDSKF   KGG
Sbjct:   60 GIAVIEKVDRKTQMKEQFEKEKWWRVLLHNDDIHTFEYVTNCLVKVVQHLSRRKAYGITWEAHSSGKATVACVWKALAEQFCVKLQQDGLTVSIAPDSKFEGNKGG 165
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A7S3M2P1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2P1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 8.580e-35
Identity = 66/107 (61.68%), Postives = 78/107 (72.90%), Query Frame = 1 
Query:   25 GCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKF-GKGGDE 342
            G  + EKV+ K Q KEQ DKEKWWRV+LHNDDIHTF+YVT  +T+  + L+ + AY IT E H AGKATV+  WKS AE  C+ LQQ GLT SIAPDSKF G  GD+
Sbjct:  149 GIALIEKVDRKAQMKEQFDKEKWWRVLLHNDDIHTFEYVTSCLTRTCQHLSRRKAYNITWEAHSAGKATVSCVWKSLAEQQCVKLQQLGLTTSIAPDSKFEGNKGDQ 255
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A813J9Y2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J9Y2_POLGL)

HSP 1 Score: 129 bits (323), Expect = 9.340e-35
Identity = 65/106 (61.32%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:   25 GCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKF--GKGG 336
            G  V +KV+ K + KE+ +KEKWWRV+LHNDDIHTF+YVT  +TKVV+ LT + AY IT E H +GKATV   WK+ AE +C+ LQQ GLT SIAPDSKF   KGG
Sbjct:  125 GIAVMDKVDMKTRMKEEFEKEKWWRVLLHNDDIHTFEYVTNCLTKVVQHLTRRKAYNITWEAHSSGKATVACVWKALAEQFCVKLQQDGLTVSIAPDSKFEGNKGG 230
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A7S2GQ17_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ17_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.120e-33
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:   40 EKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKF 324
            +KV+++VQ KE L++E WWRV+LHND+IHTF+YVT +I K+  +LT K AY IT  TH AG ATVT  WKS AE  CLGLQ  GLT SIAPD+KF
Sbjct:   26 DKVDNEVQEKEDLNEEGWWRVLLHNDEIHTFEYVTEAIVKICPQLTRKKAYMITRTTHGAGVATVTTVWKSLAEQMCLGLQTFGLTVSIAPDAKF 120
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A7S1T7M9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7M9_9RHOD)

HSP 1 Score: 121 bits (303), Expect = 1.290e-32
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:   43 KVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKFGK 330
            K + K +R+EQ DKE  WRV+LHNDD+HTFDYVT+SI KVV+ ++ K A+ ITM+ H  G ATVT  WK+ AE YC GLQ  GLT+SIAPDS F K
Sbjct:   62 KKKPKTRREEQTDKEPSWRVLLHNDDVHTFDYVTMSIVKVVRTISRKKAHRITMQAHSQGVATVTTTWKALAEEYCKGLQMHGLTSSIAPDSSFKK 157
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BLAST of jgi.p|Trimin1|160126 vs. uniprot
Match: A0A7S3U5D7_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5D7_9SPIT)

HSP 1 Score: 118 bits (296), Expect = 5.360e-32
Identity = 61/98 (62.24%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:   55 KVQRKEQLDKEKWWRVILHNDDIHTFDYVTLSITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTASIAPDSKF--GKGGDE 342
            K + KEQ  KEKWWRV+LHNDDIHTF+YVT  +TK V+ LT + AY IT E H +GKATV   WK+ AE + + LQQ GLT SIAPDSKF   KGG E
Sbjct:   25 KAKMKEQFAKEKWWRVLLHNDDIHTFEYVTGCLTKTVQHLTRRKAYNITWEAHSSGKATVACVWKNLAEQFSVKLQQDGLTVSIAPDSKFEGNKGGGE 122
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160126 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHY3_9STRA4.400e-7899.21Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
A0A835ZBL6_9STRA8.900e-5898.92Ribosomal protein L7/L12, C-terminal/adaptor prote... [more]
D8LIY1_ECTSI6.260e-5080.19ClpS domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S1RIS0_ALECA1.190e-3662.26Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A812W203_9DINO3.140e-3562.26CPLS1 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A7S3M2P1_9STRA8.580e-3561.68Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A813J9Y2_POLGL9.340e-3561.32Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S2GQ17_9STRA2.120e-3363.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1T7M9_9RHOD1.290e-3261.46Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S3U5D7_9SPIT5.360e-3262.24Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_12contigContig_12:245257..246997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160126|e_gw1.12.136.1
BRITEko00000
KEGG koko:K06891
DescriptionATP-dependent Clp protease adaptor protein ClpS
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGs2E2N9@1|root,2S9V9@2759|Eukaryota
Evalue1.03e-50
Seed ortholog2880.D8LIY1
Hectar predicted targeting categoryother localisation
TranscriptId160448
TrackFilteredModels1
ProteinId160126
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160126gene_3705Tribonema minus UTEX_B_3156 geneContig_12 245257..246997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160126Trimin1|160126|e_gw1.12.136.1Tribonema minus UTEX_B_3156 polypeptideContig_12 245257..246997 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3705_2exon_3705_2Tribonema minus UTEX_B_3156 exonContig_12 245257..245478 -
exon_3705_1exon_3705_1Tribonema minus UTEX_B_3156 exonContig_12 246839..246997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3705CDS_3705Tribonema minus UTEX_B_3156 CDSContig_12 246839..246997 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3705 ID=mRNA_3705|Name=jgi.p|Trimin1|160126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_12:245257..246997- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAACCCTTGCTGGTTCTTGGTTGCAGGGTGAAGGAGAAGGTTGA
GGACAAAGTGCAGCGAAAGGAGCAGCTGGACAAGGAGAAGTGGTGGCGAG
TCATACTGCACAACGACGACATACACACGTTTGACTACGTTACGCTGAGC
ATCACCAAGGTGGTCAAGAAGCTGACGATGAAAATAGCGTACGAGATCAC
CATGGAGACGCACAAGGCCGGCAAGGCTACGGTCACGCAGGCATGGAAGA
GCCAAGCGGAGACATACTGCCTCGGCCTGCAGCAATGTGGTCTCACCGCG
TCCATTGCGCCGGACTCCAAGTTCGGTAAGGGGGGGGACGAGGGGGGGGA
CGGCGGCGGCCCGGAAGGGGGCAGCTCATAA
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protein sequence of jgi.p|Trimin1|160126

>Trimin1|160126|e_gw1.12.136.1 ID=Trimin1|160126|e_gw1.12.136.1|Name=jgi.p|Trimin1|160126|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
MSKPLLVLGCRVKEKVEDKVQRKEQLDKEKWWRVILHNDDIHTFDYVTLS
ITKVVKKLTMKIAYEITMETHKAGKATVTQAWKSQAETYCLGLQQCGLTA
SIAPDSKFGKGGDEGGDGGGPEGGSS*
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mRNA from alignment at Contig_12:245257..246997-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3705 ID=mRNA_3705|Name=jgi.p|Trimin1|160126|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1741bp|location=Sequence derived from alignment at Contig_12:245257..246997- (Tribonema minus UTEX_B_3156 )
ATGTCCAAACCCTTGCTGGTTCTTGGTTGCAGGGTGAAGGAGAAGGTTGA
GGACAAAGTGCAGCGAAAGGAGCAGCTGGACAAGGAGAAGTGGTGGCGAG
TCATACTGCACAACGACGACATACACACGTTTGACTACGTTACGCTGAGC
ATCACCAAGGTACGTCACAAAAAGGAATTCTCTGGGAATGGGTGGAGGTT
ATACGTGGAGGGTAGGGGTAGGGCTTCCCCCCCCCATTCCTATTTTTGTG
CCCCTCTTCTCCTAGTGTTTCATAGACGTGCGACACAAGAACCCGGTAAA
AACAATGCATGGTACAACAATGTGTTACGGTATCGGACCATACCATAGTC
AGCACGGAGGCACTACGGACTGCAGAGGTCAGCACAAAGTACGATCATCA
TCATTGCCGATGAGGTGAGCAGAGGATGCAGGCGTGCAGAAAGGGCCGAG
CGGCCAGATGAACTGCGACAACGCACGCGCAAAGCGCATGTCGGTGCTGC
GAGCGTAGGCTTGACCTGATGAGGCGCAACGAGGTCCTGGATAAGGGTTA
GGGCTAGGGTTATGTTAGGGTCAGGGGTGGGGCTAGGGTTAGGGTTGACA
GTGCGGCATGTTGATGTTGCGCTGCAAGGACATTGCGCACACTCCTGACA
GACTCACATACATGAACATACTTTGAGGTATAGAACTGTACCATGAACGT
TGGTGTTGGCGGCGTTGTTTCTCCGACCTGAACTGGGGAGCGGCGCCTTG
AAAGCTCTATCAGCCCTGGTGTAGATGTCACTTTAGACGCGGTGGCACAG
TTTTTGGAGCTGTTGCGGCAGCGTCCCTGGCAATTTTAAGGACCGTCAAC
GTAGTACACATGTAGTACGCATGAGCAATCGTCAACAAGCATTGAAACTG
TCACAAAACGAGACTGTCACAACGGTATGTTTTCTGATGGCAAGCCTGAC
ATCAGTCACCTGGCATGGGCTTCATTTCTGCGTGAGCAAGAAGTATTGGC
ACTTGCACTTTTCGTGCCCTGAGCAAGAATCAACAAGAGTTCCACATGCA
GTGTGTGTCTGCTCACCACGCCCTATATGCTGTCAAAGGTGCTGCAGGCC
CCGCTCAGCATCCGAGCGCATGCATTTGACCGCGTGACAGTCAGGGTTGA
GAATCCGTGGATTTGGCGTGTAAGGCGGCATACCGCTGAGCCACCGCAGG
CACCTACACTTCTCCCGCAATGGCAAGCTGCTCTTTTTGTCTGTTCCAAA
GCGCCTGAAGACGATTGCCTTCATCGAATTAGATAAAAGCGTGCGCACTT
TTGGTCCTGCAAGTGCATTAATACACAGCTTTTGATCATGCAGGCGCATT
AATGAATTCCCGCGACTTCAGTCGTCAAGGCCTCAGCGCACAGTACCGGT
ACCATGCGGGCGCATCCGTATGTGAATTCATGAAGCGTTCAGTGAGTTGA
GTGACTGCGTCCGATCCCAACCGTTTTCTTTCAATCTTCACAAGTTAGCT
TTTGCGCGACCCCTCTCAGGTGGTCAAGAAGCTGACGATGAAAATAGCGT
ACGAGATCACCATGGAGACGCACAAGGCCGGCAAGGCTACGGTCACGCAG
GCATGGAAGAGCCAAGCGGAGACATACTGCCTCGGCCTGCAGCAATGTGG
TCTCACCGCGTCCATTGCGCCGGACTCCAAGTTCGGTAAGGGGGGGGACG
AGGGGGGGGACGGCGGCGGCCCGGAAGGGGGCAGCTCATAA
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Coding sequence (CDS) from alignment at Contig_12:245257..246997-

>mRNA_3705 ID=mRNA_3705|Name=jgi.p|Trimin1|160126|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_12:245257..246997- (Tribonema minus UTEX_B_3156 )
ATGTCCAAACCCTTGCTGGTTCTTGGTTGCAGGGTGAAGGAGAAGGTTGA
GGACAAAGTGCAGCGAAAGGAGCAGCTGGACAAGGAGAAGTGGTGGCGAG
TCATACTGCACAACGACGACATACACACGTTTGACTACGTTACGCTGAGC
ATCACCAAGGTGGTCAAGAAGCTGACGATGAAAATAGCGTACGAGATCAC
CATGGAGACGCACAAGGCCGGCAAGGCTACGGTCACGCAGGCATGGAAGA
GCCAAGCGGAGACATACTGCCTCGGCCTGCAGCAATGTGGTCTCACCGCG
TCCATTGCGCCGGACTCCAAGTTCGGTAAGGGGGGGGACGAGGGGGGGGA
CGGCGGCGGCCCGGAAGGGGGCAGCTCATAA
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