mRNA_3607 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|130718
Unique NamemRNA_3607
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A836C7L8_9STRA (CHAT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7L8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.510e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1
Query:    1 QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT
Sbjct:    1 QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 61          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A2D4BND1_PYTIN (CHAT domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BND1_PYTIN)

HSP 1 Score: 67.0 bits (162), Expect = 1.740e-11
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            +LVFVS+CHS  +G  FV+AGV HVV VRSG++I D+ +  FS  FY ALLAG+T
Sbjct:  629 KLVFVSSCHSREVGEVFVQAGVQHVVCVRSGDKILDDASAHFSASFYHALLAGKT 683          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A4D9DD68_9STRA (SH2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD68_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.430e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            QLVFVSACHS + G AF  AGVPHVVAV+  E+++D  ARVF+  FY +L+ G T
Sbjct:   94 QLVFVSACHSESAGHAFAAAGVPHVVAVKFDEKVTDYAARVFAEQFYLSLVTGNT 148          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A8K1FMT0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMT0_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 4.450e-11
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            +LVFVS+CHS  +G  F++AGV HVV VRSG++I D+ + +FS  FY A+LAG+T
Sbjct:  312 KLVFVSSCHSKEVGEVFIQAGVQHVVCVRSGDKILDDASAMFSYAFYHAVLAGKT 366          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A2M8Q9R6_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Thermofonsia Clade 3 bacterium TaxID=2364212 RepID=A0A2M8Q9R6_9CHLR)

HSP 1 Score: 65.1 bits (157), Expect = 8.060e-11
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   13 PAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            P +L F+SACHSA L  A + AGVPHVV + + + + D  AR F+  FY ALLAG+T
Sbjct:  126 PCRLAFLSACHSAGLADALINAGVPHVVVINAADAVLDLAARAFAARFYAALLAGRT 182          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: K3X8K1_GLOUD (CHAT domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8K1_GLOUD)

HSP 1 Score: 63.2 bits (152), Expect = 3.970e-10
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            +LVFVS+CHS A+G  F++AGV HVV VR  +QI DE + +FS  FY A L G+T
Sbjct:  339 KLVFVSSCHSKAIGEVFIQAGVAHVVCVRCEDQILDESSSMFSHSFYHAALTGKT 393          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A7NQ99_ROSCS (TPR repeat-containing protein n=2 Tax=Roseiflexus castenholzii TaxID=120962 RepID=A7NQ99_ROSCS)

HSP 1 Score: 63.2 bits (152), Expect = 3.970e-10
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   13 PAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQ 180
            P +L F+SACHSA L  A ++AGVPHVV + + + + D  AR F+  FY ALLAG+
Sbjct:  117 PCRLAFLSACHSAGLADALIDAGVPHVVVINAADAVLDLAARAFAKRFYAALLAGR 172          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A5D6Y1P1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1P1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.430e-10
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            +LVFVS+CHS A+G  F++AGV HVV VR  +++ DE A +FS  FY A LAG++
Sbjct:  325 KLVFVSSCHSKAIGDVFIQAGVAHVVCVRCDDKVLDESASMFSHSFYHAALAGKS 379          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A6G0X3G2_9STRA (SAM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3G2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.420e-10
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            Q+VFVSACHS  +   FV+AGVPHVVAV S  +I DE A+ F+  FY AL AG+T
Sbjct:  192 QVVFVSACHSEKVARVFVDAGVPHVVAVHSVSKIVDESAKDFAKQFYLALFAGKT 246          
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A7S2DCH4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DCH4_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 8.070e-10
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   25 VFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183
            VFVSACHSA  G AF+ AGVPHVVAVR    + D+ A  F+  FY AL  G+T
Sbjct:    2 VFVSACHSAQGGEAFISAGVPHVVAVRREAALQDKAAFAFADAFYFALFNGRT 54          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7L8_9STRA9.510e-34100.00CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2D4BND1_PYTIN1.740e-1160.00CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A4D9DD68_9STRA4.430e-1160.00SH2 domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A8K1FMT0_PYTOL4.450e-1156.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2M8Q9R6_9CHLR8.060e-1152.63Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
K3X8K1_GLOUD3.970e-1056.36CHAT domain-containing protein n=1 Tax=Globisporan... [more]
A7NQ99_ROSCS3.970e-1051.79TPR repeat-containing protein n=2 Tax=Roseiflexus ... [more]
A0A5D6Y1P1_9STRA5.430e-1054.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0X3G2_9STRA7.420e-1060.00SAM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2DCH4_9EUKA8.070e-1058.49Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1132658..1132840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|130718|gw1.9.23.1
DescriptionTetratricopeptide repeat
COG categoryK
Max annot lvl200795|Chloroflexi
EggNOG OGsCOG0457@1|root,COG3903@1|root,COG4995@1|root,COG0457@2|Bacteria,COG3903@2|Bacteria,COG4995@2|Bacteria,2G96B@200795|Chloroflexi
Evalue6.51e-11
Seed ortholog383372.Rcas_3705
Hectar predicted targeting categorysignal peptide
TranscriptId131040
TrackFilteredModels1
ProteinId130718
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130718gene_3607Tribonema minus UTEX_B_3156 geneContig_9 1132658..1132840 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3607_1exon_3607_1Tribonema minus UTEX_B_3156 exonContig_9 1132658..1132840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3607CDS_3607Tribonema minus UTEX_B_3156 CDSContig_9 1132658..1132840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|130718Trimin1|130718|gw1.9.23.1Tribonema minus UTEX_B_3156 polypeptideContig_9 1132658..1132840 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3607 ID=mRNA_3607|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=183bp|location=Sequence derived from alignment at Contig_9:1132658..1132840- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACGCTCATTGCCCGCGCAGCTGGTCTTTGTGAGCGCGTGTCACTCGGC
AGCGCTCGGCAGCGCGTTTGTGGAGGCCGGCGTGCCGCACGTCGTCGCCG
TGCGCTCGGGCGAGCAGATCAGCGACGAGGTCGCGCGCGTGTTCTCCGGC
TTCTTCTACGGAGCGCTGCTGGCGGGACAGACA
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protein sequence of jgi.p|Trimin1|130718

>Trimin1|130718|gw1.9.23.1 ID=Trimin1|130718|gw1.9.23.1|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=61bp
QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSG
FFYGALLAGQT
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mRNA from alignment at Contig_9:1132658..1132840-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3607 ID=mRNA_3607|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=183bp|location=Sequence derived from alignment at Contig_9:1132658..1132840- (Tribonema minus UTEX_B_3156 )
CAACGCTCATTGCCCGCGCAGCTGGTCTTTGTGAGCGCGTGTCACTCGGC AGCGCTCGGCAGCGCGTTTGTGGAGGCCGGCGTGCCGCACGTCGTCGCCG TGCGCTCGGGCGAGCAGATCAGCGACGAGGTCGCGCGCGTGTTCTCCGGC TTCTTCTACGGAGCGCTGCTGGCGGGACAGACA
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Coding sequence (CDS) from alignment at Contig_9:1132658..1132840-

>mRNA_3607 ID=mRNA_3607|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=183bp|location=Sequence derived from alignment at Contig_9:1132658..1132840- (Tribonema minus UTEX_B_3156 )
CAACGCTCATTGCCCGCGCAGCTGGTCTTTGTGAGCGCGTGTCACTCGGC
AGCGCTCGGCAGCGCGTTTGTGGAGGCCGGCGTGCCGCACGTCGTCGCCG
TGCGCTCGGGCGAGCAGATCAGCGACGAGGTCGCGCGCGTGTTCTCCGGC
TTCTTCTACGGAGCGCTGCTGGCGGGACAGACA
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