mRNA_3607 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A836C7L8_9STRA (CHAT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7L8_9STRA) HSP 1 Score: 118 bits (295), Expect = 9.510e-34 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 Query: 1 QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT Sbjct: 1 QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 61
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A2D4BND1_PYTIN (CHAT domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BND1_PYTIN) HSP 1 Score: 67.0 bits (162), Expect = 1.740e-11 Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 +LVFVS+CHS +G FV+AGV HVV VRSG++I D+ + FS FY ALLAG+T Sbjct: 629 KLVFVSSCHSREVGEVFVQAGVQHVVCVRSGDKILDDASAHFSASFYHALLAGKT 683
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A4D9DD68_9STRA (SH2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD68_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 4.430e-11 Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 QLVFVSACHS + G AF AGVPHVVAV+ E+++D ARVF+ FY +L+ G T Sbjct: 94 QLVFVSACHSESAGHAFAAAGVPHVVAVKFDEKVTDYAARVFAEQFYLSLVTGNT 148
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A8K1FMT0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMT0_PYTOL) HSP 1 Score: 65.9 bits (159), Expect = 4.450e-11 Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 1 Query: 19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 +LVFVS+CHS +G F++AGV HVV VRSG++I D+ + +FS FY A+LAG+T Sbjct: 312 KLVFVSSCHSKEVGEVFIQAGVQHVVCVRSGDKILDDASAMFSYAFYHAVLAGKT 366
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A2M8Q9R6_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Thermofonsia Clade 3 bacterium TaxID=2364212 RepID=A0A2M8Q9R6_9CHLR) HSP 1 Score: 65.1 bits (157), Expect = 8.060e-11 Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1 Query: 13 PAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 P +L F+SACHSA L A + AGVPHVV + + + + D AR F+ FY ALLAG+T Sbjct: 126 PCRLAFLSACHSAGLADALINAGVPHVVVINAADAVLDLAARAFAARFYAALLAGRT 182
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: K3X8K1_GLOUD (CHAT domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8K1_GLOUD) HSP 1 Score: 63.2 bits (152), Expect = 3.970e-10 Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 +LVFVS+CHS A+G F++AGV HVV VR +QI DE + +FS FY A L G+T Sbjct: 339 KLVFVSSCHSKAIGEVFIQAGVAHVVCVRCEDQILDESSSMFSHSFYHAALTGKT 393
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A7NQ99_ROSCS (TPR repeat-containing protein n=2 Tax=Roseiflexus castenholzii TaxID=120962 RepID=A7NQ99_ROSCS) HSP 1 Score: 63.2 bits (152), Expect = 3.970e-10 Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 Query: 13 PAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQ 180 P +L F+SACHSA L A ++AGVPHVV + + + + D AR F+ FY ALLAG+ Sbjct: 117 PCRLAFLSACHSAGLADALIDAGVPHVVVINAADAVLDLAARAFAKRFYAALLAGR 172
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A5D6Y1P1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1P1_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.430e-10 Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 +LVFVS+CHS A+G F++AGV HVV VR +++ DE A +FS FY A LAG++ Sbjct: 325 KLVFVSSCHSKAIGDVFIQAGVAHVVCVRCDDKVLDESASMFSHSFYHAALAGKS 379
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A6G0X3G2_9STRA (SAM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3G2_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 7.420e-10 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 19 QLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 Q+VFVSACHS + FV+AGVPHVVAV S +I DE A+ F+ FY AL AG+T Sbjct: 192 QVVFVSACHSEKVARVFVDAGVPHVVAVHSVSKIVDESAKDFAKQFYLALFAGKT 246
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Match: A0A7S2DCH4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DCH4_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 8.070e-10 Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1 Query: 25 VFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGFFYGALLAGQT 183 VFVSACHSA G AF+ AGVPHVVAVR + D+ A F+ FY AL G+T Sbjct: 2 VFVSACHSAQGGEAFISAGVPHVVAVRREAALQDKAAFAFADAFYFALFNGRT 54 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|130718 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3607 ID=mRNA_3607|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=183bp|location=Sequence derived from alignment at Contig_9:1132658..1132840- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAACGCTCATTGCCCGCGCAGCTGGTCTTTGTGAGCGCGTGTCACTCGGCback to top protein sequence of jgi.p|Trimin1|130718 >Trimin1|130718|gw1.9.23.1 ID=Trimin1|130718|gw1.9.23.1|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=61bp QRSLPAQLVFVSACHSAALGSAFVEAGVPHVVAVRSGEQISDEVARVFSGback to top mRNA from alignment at Contig_9:1132658..1132840- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3607 ID=mRNA_3607|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=183bp|location=Sequence derived from alignment at Contig_9:1132658..1132840- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_9:1132658..1132840- >mRNA_3607 ID=mRNA_3607|Name=jgi.p|Trimin1|130718|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=183bp|location=Sequence derived from alignment at Contig_9:1132658..1132840- (Tribonema minus UTEX_B_3156 )back to top |