mRNA_3601 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136192
Unique NamemRNA_3601
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A835YSC8_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC8_9STRA)

HSP 1 Score: 365 bits (937), Expect = 6.970e-128
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1
Query:    1 GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE 540
            GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE
Sbjct:    1 GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE 180          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A6H5JYI9_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI9_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.010e-60
Identity = 117/222 (52.70%), Postives = 131/222 (59.01%), Query Frame = 1
Query:    1 GVALSRT--DCAPQL-MLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS--------------------------------DPS------------GAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPP 525
            GV +SR+  DCAPQL M  KDQLTVTG KGFRM RAT G S G WY+E  VLPP   +GH R+GWS  AG LQ PVGYD+ SYAYRD+AGS+VH SLR D YG P+GPGDV+G  I L  P+                                 PS            G P + IRFF NG DQGVAY+A+ P  Y PAVSLYMG  VRVNFGP FV  PP
Sbjct:   87 GVVISRSAEDCAPQLTMPHKDQLTVTGHKGFRMARATKGVSNGTWYWECTVLPPETTEGHCRLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDSLRSDNYGEPWGPGDVIGFLIKLKSPTPEEIIDTVGASSDSGRNGMTAAAAAAALAAGQSPSELAATAASDTAAGDPFNEIRFFKNGRDQGVAYSAMKPGTYFPAVSLYMGGSVRVNFGPDFVYPPP 308          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A7S0TCR8_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TCR8_9STRA)

HSP 1 Score: 164 bits (415), Expect = 8.260e-48
Identity = 86/174 (49.43%), Postives = 106/174 (60.92%), Query Frame = 1
Query:    4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARAD-GHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAP 522
            V +S  D A QL +SKD L++TG+KG+RM RA  G SEG WYFE ++      D GH R+GW+T   +LQA VG+DR  + YRD AGS  H S R D YG  YGPGDVVG  I L       G   + IRFF NG DQGVA+  +  A Y PA S+Y   ++  NFGP + C P
Sbjct:   11 VTISGEDRASQLSVSKDGLSLTGDKGYRMARAVIGVSEGCWYFESVIGESKNGDQGHYRVGWATKEAELQASVGFDRFGFGYRDTAGSLCHDSNREDNYGEAYGPGDVVGCMISL-------GKTGNHIRFFRNGKDQGVAFRRVPDATYFPAFSIYSSGQLTANFGPEWRCPP 177          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: D8LMA4_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA4_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 2.120e-47
Identity = 96/194 (49.48%), Postives = 110/194 (56.70%), Query Frame = 1
Query:    1 GVALSRT--DCAPQL-MLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS--------------------------------DPS------------GAPTSAIRFFVNGVDQGVAYTALAP 441
            GV +SR+  DCAPQL M  KDQLTVTG KGFRM RAT G S G WY+E  VLPP   +GH R+GWS  AG LQ PVGYD+ SYAYRD+AGS+VH S R D YG P+GPGDV+G  I L  P+                                 PS            G P + IRFF NG DQGVAY+A+ P
Sbjct:   85 GVVISRSAEDCAPQLTMPHKDQLTVTGHKGFRMARATKGVSNGTWYWECAVLPPETTEGHCRLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDSHRSDNYGEPWGPGDVIGFLIRLKSPTPEEIIDTVGASSDSGRHGMTAAAAAAALAAGQSPSELAATAASDTAAGDPLNEIRFFKNGRDQGVAYSAMKP 278          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A1Y1HTU7_KLENI (B30.2/SPRY domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTU7_KLENI)

HSP 1 Score: 161 bits (408), Expect = 1.180e-44
Identity = 94/201 (46.77%), Postives = 113/201 (56.22%), Query Frame = 1
Query:    4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPT----------------------SAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGAR------VRVNFGPRFVCAP 522
            V LSRT+ APQ+ LS DQLT +  KG+RMVRAT G  +GAWYFE+ ++      GH R+GWS   GDLQAPVGYD HSY YRD+ GS+VH + R + YGA YG GDVVG  I L G   P  A                        S + FF NG  QGVAY ++    Y PA SLY   +      +R NFGP + C P
Sbjct:  114 VLLSRTERAPQIQLSADQLTASSTKGYRMVRATTGPYDGAWYFEIKIVHLGET-GHTRLGWSMSGGDLQAPVGYDTHSYGYRDVDGSKVHNTWREE-YGAGYGEGDVVGCYINLPGGVRPEKADLVDYRGKPHHTETAEVPQQPLKDSQVAFFKNGECQGVAYWSIFGGQYFPAASLYTSNKQSRACEIRFNFGPDWDCPP 312          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A482ULD5_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ULD5_9ARCH)

HSP 1 Score: 154 bits (388), Expect = 1.470e-44
Identity = 81/147 (55.10%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   88 MVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTA--LAPAAYLPAVSLYMGARVRVNFGPRFVCAP 522
            MVRAT G  EG++Y+E  VLP    D HVRIGWST  G+LQAPVGYD+HSYAYRD+AGS VH S R D YG  YG GDV+G  ++++     S    + + FF NG DQG+AY+A  +    Y PA+SLY  A VRVNFGP F+  P
Sbjct:    1 MVRATHGVHEGSYYWEAEVLPSLGDDAHVRIGWSTREGELQAPVGYDQHSYAYRDIAGSMVHKSTRIDEYGEAYGVGDVIGCHLIIS-----SDLAQNKMSFFKNGRDQGMAYSADDIPFGVYFPALSLYKQAVVRVNFGPSFIIKP 142          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A7S3ERU6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ERU6_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 1.500e-41
Identity = 83/177 (46.89%), Postives = 102/177 (57.63%), Query Frame = 1
Query:   64 VTGEKGFRMVRATAGASEGAWYFEVLVLPPARA-DGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS----------------------DPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPP 525
            V G KG+RM+RAT G S G+WY+EV + PP    DGHVR+GW T  GD+QAPVGYD++SY+YRD  GS+ H SL  + YG PYG  DVVG  I +  P                       + + +  S I FFVNG  QG A+T +    Y PA+SLY  A V VNFGP F   PP
Sbjct:    1 VVGYKGYRMIRATHGVSVGSWYYEVKIRPPQNGEDGHVRLGWCTEMGDVQAPVGYDQNSYSYRDAGGSKFHESLS-EAYGKPYGVNDVVGCWIQMGTPPASVRMRQRINIKGVEYIVEEERERNASVGSRITFFVNGESQGNAFTDIWAEVYYPAISLYKAACVSVNFGPNFEYPPP 176          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A8J9REB5_9CHLO (Set1/Ash2 histone methyltransferase complex subunit ASH2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REB5_9CHLO)

HSP 1 Score: 146 bits (369), Expect = 7.530e-40
Identity = 89/205 (43.41%), Postives = 112/205 (54.63%), Query Frame = 1
Query:    4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGA-----------------------QIVLAGPSDPSGAPT--SAIRFFVNGVDQGVAYTALAPAAYLPAVSLYM------GARVRVNFGPRFVCAPP 525
            V LS+ + A Q++LS+D +++T  KG+RM RAT GA  G WYFEV  +    A GH R+GWST  G+LQAPVGYD HS AYRDL GS+VH +LR D YGAP+  GDV+G                        ++V+A   +        S + F  NG  QGVA+  +    Y PA SLY       GA V  NFGP F   PP
Sbjct:   58 VQLSKLEKAQQVVLSEDGMSITSHKGYRMARATRGAYVGTWYFEVR-MTHLGATGHCRLGWSTKKGELQAPVGYDEHSLAYRDLEGSKVHKALRED-YGAPFAEGDVIGCFLHMPEGGRPMESGKEDVWRLKNRLVIAEQPEQEAKSLAGSVVAFTKNGEFQGVAFRDITEGTYYPAASLYTLPEQTEGATVTFNFGPDFAFPPP 260          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: U5CWA0_AMBTC (B30.2/SPRY domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5CWA0_AMBTC)

HSP 1 Score: 149 bits (375), Expect = 1.160e-39
Identity = 92/204 (45.10%), Postives = 113/204 (55.39%), Query Frame = 1
Query:    4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVL------------------------AGPSD--PSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYM-----GARVRVNFGPRFVCAP 522
            + LS+   A ++ LS+D+LT +  KG+RMVRAT G  EGAWYFE+ VL    + GH R+GWST  GDLQAPVGYD +S+AYRDL GS+VH +LR + YG  Y  GDV+G  I L                          P D  P   P S + FF NG+ QGVAY  +    Y PA S+Y         VR NFGP F C P
Sbjct:  201 ICLSKIYKAEKVELSEDRLTASSCKGYRMVRATRGVLEGAWYFEIRVLKLGES-GHTRLGWSTEKGDLQAPVGYDGNSFAYRDLEGSKVHKALR-EVYGEEYKEGDVIGFYINLPDGGLYAPKPPHLVWYKGQRYAYAVDPKDDPPKVIPGSEVTFFKNGICQGVAYRDINGGRYYPAASMYTLPNNPNCSVRFNFGPDFECFP 402          
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A0M0JU89_9EUKA (Trithorax protein ash2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU89_9EUKA)

HSP 1 Score: 150 bits (378), Expect = 1.960e-39
Identity = 92/207 (44.44%), Postives = 115/207 (55.56%), Query Frame = 1
Query:    4 VALSRTDCAPQLMLSKDQ----LTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARA-DGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS----------DPSGA-----------PT--SAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE 540
            V LSR   APQ+ L +++    L+  G KG+RMVRAT G S G +Y+EVLV  P    DGH+RIGWST AGDLQAPVGYD +SYAYRD+ G++ H SL    YG PY  GDV+G  + +  P           DP G            P+  S + F+ NG   G A+T +    Y PA SLY  A +  NFGP F   PP L  +
Sbjct:  280 VQLSRPHRAPQITLRENEQGVALSAVGYKGYRMVRATHGVSSGCYYYEVLVQEPLHGEDGHMRIGWSTEAGDLQAPVGYDVNSYAYRDVNGAKFHESLGEP-YGEPYKAGDVIGCMLRMGEPGAIVRQRQRFRDPKGVEYLVEEERARVPSVGSVLAFYKNGKPLGPAFTDVHAEQYFPAASLYRAACLTFNFGPSFAFPPPDLEVD 485          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSC8_9STRA6.970e-128100.00Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A6H5JYI9_9PHAE1.010e-6052.70B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S0TCR8_9STRA8.260e-4849.43Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
D8LMA4_ECTSI2.120e-4749.48B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
A0A1Y1HTU7_KLENI1.180e-4446.77B30.2/SPRY domain-containing protein n=1 Tax=Klebs... [more]
A0A482ULD5_9ARCH1.470e-4455.10B30.2/SPRY domain-containing protein n=1 Tax=archa... [more]
A0A7S3ERU6_9EUKA1.500e-4146.89Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A8J9REB5_9CHLO7.530e-4043.41Set1/Ash2 histone methyltransferase complex subuni... [more]
U5CWA0_AMBTC1.160e-3945.10B30.2/SPRY domain-containing protein n=1 Tax=Ambor... [more]
A0A0M0JU89_9EUKA1.960e-3944.44Trithorax protein ash2 n=1 Tax=Chrysochromulina to... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1084563..1085694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136192|gw1.9.103.1
BRITEko00000,ko00001,ko03036,ko03041
KEGG Pathwayko04212,ko04934,map04212,map04934
KEGG koko:K13113,ko:K14964,ko:K14967
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000785,GO:0000790,GO:0000791,GO:0000902,GO:0000904,GO:0001067,GO:0001932,GO:0001933,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0005719,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007444,GO:0007472,GO:0007474,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0008013,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008340,GO:0008757,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009793,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009965,GO:0009987,GO:0010016,GO:0010033,GO:0010154,GO:0010228,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0014070,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016358,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0022008,GO:0022414,GO:0022607,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0031056,GO:0031057,GO:0031058,GO:0031060,GO:0031062,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031490,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032200,GO:0032259,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033127,GO:0033128,GO:0033554,GO:0033993,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035075,GO:0035097,GO:0035107,GO:0035114,GO:0035120,GO:0035209,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0036314,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043627,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048096,GO:0048188,GO:0048189,GO:0048316,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048563,GO:0048569,GO:0048608,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048813,GO:0048827,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0060249,GO:0060255,GO:0060290,GO:0060322,GO:0060429,GO:0060562,GO:0060776,GO:0061458,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071339,GO:0071704,GO:0071840,GO:0080090,GO:0080182,GO:0090304,GO:0097159,GO:0097305,GO:0097549,GO:0097659,GO:0098687,GO:0099402,GO:0120036,GO:0120039,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901700,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1904837,GO:1905268,GO:1905269,GO:1905392,GO:1990188,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
Preferred nameASH2L
Descriptioneuchromatin binding
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2626@1|root,KOG2626@2759|Eukaryota
Evalue3.47e-48
Seed ortholog2880.D8LMA4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSPRY domain protein
Ec32 orthologEc-05_002090.1
TranscriptId136514
TrackFilteredModels1
ProteinId136192
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136192gene_3601Tribonema minus UTEX_B_3156 geneContig_9 1084563..1085694 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3601_1exon_3601_1Tribonema minus UTEX_B_3156 exonContig_9 1084563..1084772 +
exon_3601_2exon_3601_2Tribonema minus UTEX_B_3156 exonContig_9 1085365..1085694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3601CDS_3601Tribonema minus UTEX_B_3156 CDSContig_9 1084563..1084772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136192Trimin1|136192|gw1.9.103.1Tribonema minus UTEX_B_3156 polypeptideContig_9 1084563..1085694 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3601 ID=mRNA_3601|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=540bp|location=Sequence derived from alignment at Contig_9:1084563..1085694+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGTGGCGCTGTCGCGGACGGACTGCGCGCCGCAGCTGATGCTCAGCAA
GGACCAGCTCACAGTGACGGGGGAGAAGGGGTTCAGGATGGTGCGCGCGA
CGGCGGGCGCGAGCGAGGGCGCGTGGTACTTCGAGGTGCTCGTGCTGCCG
CCGGCGCGCGCGGACGGGCACGTGCGCATCGGCTGGTCTACCGGCGCCGG
TGACCTGCAGGCGCCCGTCGGCTACGACCGCCACTCGTACGCGTACCGCG
ACCTCGCGGGGTCGCGCGTGCACGCGTCGCTGCGCCACGACGGCTACGGC
GCGCCGTACGGCCCGGGCGACGTCGTAGGCGCGCAGATCGTGCTCGCAGG
CCCTTCCGACCCTAGCGGCGCGCCCACCAGCGCCATCCGCTTCTTCGTGA
ACGGCGTGGATCAGGGCGTCGCGTACACCGCGCTCGCGCCCGCGGCGTAC
CTGCCGGCGGTCTCGCTGTACATGGGCGCGCGCGTGCGCGTCAACTTCGG
GCCGCGCTTCGTGTGCGCGCCGCCGCCGCTGCGCGCGGAG
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protein sequence of jgi.p|Trimin1|136192

>Trimin1|136192|gw1.9.103.1 ID=Trimin1|136192|gw1.9.103.1|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=180bp
GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLP
PARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYG
APYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAY
LPAVSLYMGARVRVNFGPRFVCAPPPLRAE
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mRNA from alignment at Contig_9:1084563..1085694+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3601 ID=mRNA_3601|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1132bp|location=Sequence derived from alignment at Contig_9:1084563..1085694+ (Tribonema minus UTEX_B_3156 )
GGGGTGGCGCTGTCGCGGACGGACTGCGCGCCGCAGCTGATGCTCAGCAA GGACCAGCTCACAGTGACGGGGGAGAAGGGGTTCAGGATGGTGCGCGCGA CGGCGGGCGCGAGCGAGGGCGCGTGGTACTTCGAGGTGCTCGTGCTGCCG CCGGCGCGCGCGGACGGGCACGTGCGCATCGGCTGGTCTACCGGCGCCGG TGACCTGCAGGTATGTATGTACACGTGTACAATAAGTGACATATACATAG AGTCTGCGGCGGCTTGGTTGCTGTGTGGAATTCAGACCTGCGTTGCCAGA CGTGCGGTGCAATGCGCGATGTTGAAGTTGCTGCAGGGGTACCTTGCGAG CGCCATGCTGCCAAGCGCTGCGTAGACAACACCCACCTCTAGAAGGCGAT GCCTTTGTGCATGAAACAGTTGACCATCAACGCTGTGCACAAAGTCTGTG TGCAATTCACATGCGCACCGTAATCTCCAAAGATGACGCTTGTGAAACGT GCGCGTCAGGCCGCCGCGCCGGTGCATCAACGCACCGCGACTGCAGCGGA CCCCCTTCTCTCATGCACAACCTCCATGCCCTATACCACGCGCCTGCCTT ACCTGCCATGCGCCCACATCGCTCACACATACGCATTGCGTTGCGCGCGC CAGGCGCCCGTCGGCTACGACCGCCACTCGTACGCGTACCGCGACCTCGC GGGCTCACGCGTGCACGCGTCGCTGCGCCATGCGTCTGCCTCACTTTTCA TGCGTCCACATCACCCACACACACGCAAACGCGCATTGCGCCACGCGCGC AGGCGCCCGTCGGCTACGACCGCCACTCGTACGCGTACCGCGACCTCGCG GGGTCGCGCGTGCACGCGTCGCTGCGCCACGACGGCTACGGCGCGCCGTA CGGCCCGGGCGACGTCGTAGGCGCGCAGATCGTGCTCGCAGGCCCTTCCG ACCCTAGCGGCGCGCCCACCAGCGCCATCCGCTTCTTCGTGAACGGCGTG GATCAGGGCGTCGCGTACACCGCGCTCGCGCCCGCGGCGTACCTGCCGGC GGTCTCGCTGTACATGGGCGCGCGCGTGCGCGTCAACTTCGGGCCGCGCT TCGTGTGCGCGCCGCCGCCGCTGCGCGCGGAG
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Coding sequence (CDS) from alignment at Contig_9:1084563..1085694+

>mRNA_3601 ID=mRNA_3601|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=540bp|location=Sequence derived from alignment at Contig_9:1084563..1085694+ (Tribonema minus UTEX_B_3156 )
GGGGTGGCGCTGTCGCGGACGGACTGCGCGCCGCAGCTGATGCTCAGCAA
GGACCAGCTCACAGTGACGGGGGAGAAGGGGTTCAGGATGGTGCGCGCGA
CGGCGGGCGCGAGCGAGGGCGCGTGGTACTTCGAGGTGCTCGTGCTGCCG
CCGGCGCGCGCGGACGGGCACGTGCGCATCGGCTGGTCTACCGGCGCCGG
TGACCTGCAGGCGCCCGTCGGCTACGACCGCCACTCGTACGCGTACCGCG
ACCTCGCGGGGTCGCGCGTGCACGCGTCGCTGCGCCACGACGGCTACGGC
GCGCCGTACGGCCCGGGCGACGTCGTAGGCGCGCAGATCGTGCTCGCAGG
CCCTTCCGACCCTAGCGGCGCGCCCACCAGCGCCATCCGCTTCTTCGTGA
ACGGCGTGGATCAGGGCGTCGCGTACACCGCGCTCGCGCCCGCGGCGTAC
CTGCCGGCGGTCTCGCTGTACATGGGCGCGCGCGTGCGCGTCAACTTCGG
GCCGCGCTTCGTGTGCGCGCCGCCGCCGCTGCGCGCGGAG
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