mRNA_3601 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A835YSC8_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC8_9STRA) HSP 1 Score: 365 bits (937), Expect = 6.970e-128 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 Query: 1 GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE 540 GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE Sbjct: 1 GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE 180
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A6H5JYI9_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI9_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.010e-60 Identity = 117/222 (52.70%), Postives = 131/222 (59.01%), Query Frame = 1 Query: 1 GVALSRT--DCAPQL-MLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS--------------------------------DPS------------GAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPP 525 GV +SR+ DCAPQL M KDQLTVTG KGFRM RAT G S G WY+E VLPP +GH R+GWS AG LQ PVGYD+ SYAYRD+AGS+VH SLR D YG P+GPGDV+G I L P+ PS G P + IRFF NG DQGVAY+A+ P Y PAVSLYMG VRVNFGP FV PP Sbjct: 87 GVVISRSAEDCAPQLTMPHKDQLTVTGHKGFRMARATKGVSNGTWYWECTVLPPETTEGHCRLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDSLRSDNYGEPWGPGDVIGFLIKLKSPTPEEIIDTVGASSDSGRNGMTAAAAAAALAAGQSPSELAATAASDTAAGDPFNEIRFFKNGRDQGVAYSAMKPGTYFPAVSLYMGGSVRVNFGPDFVYPPP 308
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A7S0TCR8_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TCR8_9STRA) HSP 1 Score: 164 bits (415), Expect = 8.260e-48 Identity = 86/174 (49.43%), Postives = 106/174 (60.92%), Query Frame = 1 Query: 4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARAD-GHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAP 522 V +S D A QL +SKD L++TG+KG+RM RA G SEG WYFE ++ D GH R+GW+T +LQA VG+DR + YRD AGS H S R D YG YGPGDVVG I L G + IRFF NG DQGVA+ + A Y PA S+Y ++ NFGP + C P Sbjct: 11 VTISGEDRASQLSVSKDGLSLTGDKGYRMARAVIGVSEGCWYFESVIGESKNGDQGHYRVGWATKEAELQASVGFDRFGFGYRDTAGSLCHDSNREDNYGEAYGPGDVVGCMISL-------GKTGNHIRFFRNGKDQGVAFRRVPDATYFPAFSIYSSGQLTANFGPEWRCPP 177
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: D8LMA4_ECTSI (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA4_ECTSI) HSP 1 Score: 166 bits (420), Expect = 2.120e-47 Identity = 96/194 (49.48%), Postives = 110/194 (56.70%), Query Frame = 1 Query: 1 GVALSRT--DCAPQL-MLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS--------------------------------DPS------------GAPTSAIRFFVNGVDQGVAYTALAP 441 GV +SR+ DCAPQL M KDQLTVTG KGFRM RAT G S G WY+E VLPP +GH R+GWS AG LQ PVGYD+ SYAYRD+AGS+VH S R D YG P+GPGDV+G I L P+ PS G P + IRFF NG DQGVAY+A+ P Sbjct: 85 GVVISRSAEDCAPQLTMPHKDQLTVTGHKGFRMARATKGVSNGTWYWECAVLPPETTEGHCRLGWSLPAGKLQGPVGYDKFSYAYRDIAGSKVHDSHRSDNYGEPWGPGDVIGFLIRLKSPTPEEIIDTVGASSDSGRHGMTAAAAAAALAAGQSPSELAATAASDTAAGDPLNEIRFFKNGRDQGVAYSAMKP 278
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A1Y1HTU7_KLENI (B30.2/SPRY domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTU7_KLENI) HSP 1 Score: 161 bits (408), Expect = 1.180e-44 Identity = 94/201 (46.77%), Postives = 113/201 (56.22%), Query Frame = 1 Query: 4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPT----------------------SAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGAR------VRVNFGPRFVCAP 522 V LSRT+ APQ+ LS DQLT + KG+RMVRAT G +GAWYFE+ ++ GH R+GWS GDLQAPVGYD HSY YRD+ GS+VH + R + YGA YG GDVVG I L G P A S + FF NG QGVAY ++ Y PA SLY + +R NFGP + C P Sbjct: 114 VLLSRTERAPQIQLSADQLTASSTKGYRMVRATTGPYDGAWYFEIKIVHLGET-GHTRLGWSMSGGDLQAPVGYDTHSYGYRDVDGSKVHNTWREE-YGAGYGEGDVVGCYINLPGGVRPEKADLVDYRGKPHHTETAEVPQQPLKDSQVAFFKNGECQGVAYWSIFGGQYFPAASLYTSNKQSRACEIRFNFGPDWDCPP 312
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A482ULD5_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ULD5_9ARCH) HSP 1 Score: 154 bits (388), Expect = 1.470e-44 Identity = 81/147 (55.10%), Postives = 99/147 (67.35%), Query Frame = 1 Query: 88 MVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPSDPSGAPTSAIRFFVNGVDQGVAYTA--LAPAAYLPAVSLYMGARVRVNFGPRFVCAP 522 MVRAT G EG++Y+E VLP D HVRIGWST G+LQAPVGYD+HSYAYRD+AGS VH S R D YG YG GDV+G ++++ S + + FF NG DQG+AY+A + Y PA+SLY A VRVNFGP F+ P Sbjct: 1 MVRATHGVHEGSYYWEAEVLPSLGDDAHVRIGWSTREGELQAPVGYDQHSYAYRDIAGSMVHKSTRIDEYGEAYGVGDVIGCHLIIS-----SDLAQNKMSFFKNGRDQGMAYSADDIPFGVYFPALSLYKQAVVRVNFGPSFIIKP 142
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A7S3ERU6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ERU6_9EUKA) HSP 1 Score: 149 bits (377), Expect = 1.500e-41 Identity = 83/177 (46.89%), Postives = 102/177 (57.63%), Query Frame = 1 Query: 64 VTGEKGFRMVRATAGASEGAWYFEVLVLPPARA-DGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS----------------------DPSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPP 525 V G KG+RM+RAT G S G+WY+EV + PP DGHVR+GW T GD+QAPVGYD++SY+YRD GS+ H SL + YG PYG DVVG I + P + + + S I FFVNG QG A+T + Y PA+SLY A V VNFGP F PP Sbjct: 1 VVGYKGYRMIRATHGVSVGSWYYEVKIRPPQNGEDGHVRLGWCTEMGDVQAPVGYDQNSYSYRDAGGSKFHESLS-EAYGKPYGVNDVVGCWIQMGTPPASVRMRQRINIKGVEYIVEEERERNASVGSRITFFVNGESQGNAFTDIWAEVYYPAISLYKAACVSVNFGPNFEYPPP 176
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A8J9REB5_9CHLO (Set1/Ash2 histone methyltransferase complex subunit ASH2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9REB5_9CHLO) HSP 1 Score: 146 bits (369), Expect = 7.530e-40 Identity = 89/205 (43.41%), Postives = 112/205 (54.63%), Query Frame = 1 Query: 4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGA-----------------------QIVLAGPSDPSGAPT--SAIRFFVNGVDQGVAYTALAPAAYLPAVSLYM------GARVRVNFGPRFVCAPP 525 V LS+ + A Q++LS+D +++T KG+RM RAT GA G WYFEV + A GH R+GWST G+LQAPVGYD HS AYRDL GS+VH +LR D YGAP+ GDV+G ++V+A + S + F NG QGVA+ + Y PA SLY GA V NFGP F PP Sbjct: 58 VQLSKLEKAQQVVLSEDGMSITSHKGYRMARATRGAYVGTWYFEVR-MTHLGATGHCRLGWSTKKGELQAPVGYDEHSLAYRDLEGSKVHKALRED-YGAPFAEGDVIGCFLHMPEGGRPMESGKEDVWRLKNRLVIAEQPEQEAKSLAGSVVAFTKNGEFQGVAFRDITEGTYYPAASLYTLPEQTEGATVTFNFGPDFAFPPP 260
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: U5CWA0_AMBTC (B30.2/SPRY domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5CWA0_AMBTC) HSP 1 Score: 149 bits (375), Expect = 1.160e-39 Identity = 92/204 (45.10%), Postives = 113/204 (55.39%), Query Frame = 1 Query: 4 VALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARADGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVL------------------------AGPSD--PSGAPTSAIRFFVNGVDQGVAYTALAPAAYLPAVSLYM-----GARVRVNFGPRFVCAP 522 + LS+ A ++ LS+D+LT + KG+RMVRAT G EGAWYFE+ VL + GH R+GWST GDLQAPVGYD +S+AYRDL GS+VH +LR + YG Y GDV+G I L P D P P S + FF NG+ QGVAY + Y PA S+Y VR NFGP F C P Sbjct: 201 ICLSKIYKAEKVELSEDRLTASSCKGYRMVRATRGVLEGAWYFEIRVLKLGES-GHTRLGWSTEKGDLQAPVGYDGNSFAYRDLEGSKVHKALR-EVYGEEYKEGDVIGFYINLPDGGLYAPKPPHLVWYKGQRYAYAVDPKDDPPKVIPGSEVTFFKNGICQGVAYRDINGGRYYPAASMYTLPNNPNCSVRFNFGPDFECFP 402
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Match: A0A0M0JU89_9EUKA (Trithorax protein ash2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU89_9EUKA) HSP 1 Score: 150 bits (378), Expect = 1.960e-39 Identity = 92/207 (44.44%), Postives = 115/207 (55.56%), Query Frame = 1 Query: 4 VALSRTDCAPQLMLSKDQ----LTVTGEKGFRMVRATAGASEGAWYFEVLVLPPARA-DGHVRIGWSTGAGDLQAPVGYDRHSYAYRDLAGSRVHASLRHDGYGAPYGPGDVVGAQIVLAGPS----------DPSGA-----------PT--SAIRFFVNGVDQGVAYTALAPAAYLPAVSLYMGARVRVNFGPRFVCAPPPLRAE 540 V LSR APQ+ L +++ L+ G KG+RMVRAT G S G +Y+EVLV P DGH+RIGWST AGDLQAPVGYD +SYAYRD+ G++ H SL YG PY GDV+G + + P DP G P+ S + F+ NG G A+T + Y PA SLY A + NFGP F PP L + Sbjct: 280 VQLSRPHRAPQITLRENEQGVALSAVGYKGYRMVRATHGVSSGCYYYEVLVQEPLHGEDGHMRIGWSTEAGDLQAPVGYDVNSYAYRDVNGAKFHESLGEP-YGEPYKAGDVIGCMLRMGEPGAIVRQRQRFRDPKGVEYLVEEERARVPSVGSVLAFYKNGKPLGPAFTDVHAEQYFPAASLYRAACLTFNFGPSFAFPPPDLEVD 485 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136192 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3601 ID=mRNA_3601|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=540bp|location=Sequence derived from alignment at Contig_9:1084563..1085694+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGGGTGGCGCTGTCGCGGACGGACTGCGCGCCGCAGCTGATGCTCAGCAAback to top protein sequence of jgi.p|Trimin1|136192 >Trimin1|136192|gw1.9.103.1 ID=Trimin1|136192|gw1.9.103.1|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=180bp GVALSRTDCAPQLMLSKDQLTVTGEKGFRMVRATAGASEGAWYFEVLVLPback to top mRNA from alignment at Contig_9:1084563..1085694+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3601 ID=mRNA_3601|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1132bp|location=Sequence derived from alignment at Contig_9:1084563..1085694+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_9:1084563..1085694+ >mRNA_3601 ID=mRNA_3601|Name=jgi.p|Trimin1|136192|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=540bp|location=Sequence derived from alignment at Contig_9:1084563..1085694+ (Tribonema minus UTEX_B_3156 )back to top |