mRNA_3554 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|337758
Unique NamemRNA_3554
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|337758 vs. uniprot
Match: A0A835YR25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR25_9STRA)

HSP 1 Score: 374 bits (959), Expect = 9.770e-131
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1 
Query:    1 MSVPEVRVFQVMNEVRLLPKEAWSLNWESHMGLQPSAKFSLTQRSRRYYAGAVVSKRLVELEVKDLIGTPLPRLPDQLSRLKIVQYSRVRSIGIPQVKHIGCLEIDDRTDAGSECWVRKFLEGLKCSVQSLSLKTSHWAACTALSLPRGIETAHFEKRLDYTGVRKGLHRAPHSSTSSIGSAFGA 555
            MSVPEVRVFQVMNEVRLLPKEAWSLNWESHMGLQPSAKFSLTQRSRRYYAGAVVSKRLVELEVKDLIGTPLPRLPDQLSRLKIVQYSRVRSIGIPQVKHIGCLEIDDRTDAGSECWVRKFLEGLKCSVQSLSLKTSHWAACTALSLPRGIETAHFEKRLDYTGVRKGLHRAPHSSTSSIGSAFGA
Sbjct:    1 MSVPEVRVFQVMNEVRLLPKEAWSLNWESHMGLQPSAKFSLTQRSRRYYAGAVVSKRLVELEVKDLIGTPLPRLPDQLSRLKIVQYSRVRSIGIPQVKHIGCLEIDDRTDAGSECWVRKFLEGLKCSVQSLSLKTSHWAACTALSLPRGIETAHFEKRLDYTGVRKGLHRAPHSSTSSIGSAFGA 185
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BLAST of jgi.p|Trimin1|337758 vs. uniprot
Match: A0A836CBH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.110e-16
Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 1 
Query:    4 SVPEVR-VFQVMNEVRLLPKEAWSLNWESHMGLQPSAKFSLTQRSRRYYAGAVVSKRLVELEVKDLIGTPLPRLPDQLSRLKIVQYSRVRSIGIPQVKHIGCLEIDDRTDAGSECWVRKFLEGLKCSVQSLSLKTSHWAACTALSLPRGIETAHFEKRLDYTGVRKGLHRAP 516
            ++P++  V  VM + RLL K AWSL W+ H+ LQP  +++L   S+++Y  A +++R++EL+V DLIG  LP  P+                      H+ CL +  R    S   + +   G +  V +L L+++ W  C  L  P+G+    FE  LD    R+ L  AP
Sbjct:  321 TMPDIEIVLVVMAQARLLTKSAWSLCWKLHLRLQPMVRYNLDSVSQQHYEAAALNRRIIELDVTDLIGIGLPHFPE----------------------HLECLRVSQRAGVWSPASLLQLKTGAQ--VHTLRLRSNKWHKCKELRFPKGV--TKFEGVLD-PYARRRLRWAP 465
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|337758 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YR25_9STRA9.770e-131100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CBH6_9STRA3.110e-1631.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:590337..590950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|337758|MIX46521_2_26
Hectar predicted targeting categoryother localisation
TranscriptId338080
TrackFilteredModels1
ProteinId337758
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337758gene_3554Tribonema minus UTEX_B_3156 geneContig_9 590337..590950 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3554_1exon_3554_1Tribonema minus UTEX_B_3156 exonContig_9 590337..590950 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3554UTR3_3554Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 590337..590392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3554CDS_3554Tribonema minus UTEX_B_3156 CDSContig_9 590393..590950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|337758Trimin1|337758|MIX46521_2_26Tribonema minus UTEX_B_3156 polypeptideContig_9 590393..590950 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3554 ID=mRNA_3554|Name=jgi.p|Trimin1|337758|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=614bp|location=Sequence derived from alignment at Contig_9:590337..590950- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTGCCAGAAGTGAGGGTTTTTCAGGTCATGAACGAGGTGCGCCT
GCTGCCGAAGGAAGCATGGAGCCTCAATTGGGAATCTCATATGGGGCTTC
AGCCATCAGCCAAATTCAGTTTGACACAGCGCTCGCGGCGGTATTACGCA
GGGGCCGTAGTAAGCAAGAGGCTCGTGGAGCTGGAGGTGAAGGATCTGAT
CGGCACGCCGCTGCCTCGACTCCCTGACCAGCTATCACGCCTGAAAATCG
TTCAATATTCTCGAGTGCGGAGCATCGGCATTCCGCAAGTCAAGCACATC
GGTTGCCTTGAAATCGATGACCGTACGGATGCTGGGTCCGAGTGCTGGGT
GAGGAAGTTTCTGGAGGGACTCAAGTGTTCTGTGCAGAGCCTCAGCTTGA
AGACCAGCCACTGGGCCGCGTGCACGGCTCTCAGTCTTCCAAGAGGGATC
GAGACAGCGCATTTCGAGAAGCGCCTGGACTACACAGGTGTCCGGAAAGG
ACTGCATCGAGCGCCTCATTCGTCTACATCGTCAATCGGAAGTGCCTTCG
GGGCCTGATGTTGCACAGCGGTGATGAGTGCGCTGCTGCATAGGTGAGCT
GATTTTGCAGGCTG
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protein sequence of jgi.p|Trimin1|337758

>Trimin1|337758|MIX46521_2_26 ID=Trimin1|337758|MIX46521_2_26|Name=jgi.p|Trimin1|337758|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
MSVPEVRVFQVMNEVRLLPKEAWSLNWESHMGLQPSAKFSLTQRSRRYYA
GAVVSKRLVELEVKDLIGTPLPRLPDQLSRLKIVQYSRVRSIGIPQVKHI
GCLEIDDRTDAGSECWVRKFLEGLKCSVQSLSLKTSHWAACTALSLPRGI
ETAHFEKRLDYTGVRKGLHRAPHSSTSSIGSAFGA*
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mRNA from alignment at Contig_9:590337..590950-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3554 ID=mRNA_3554|Name=jgi.p|Trimin1|337758|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=614bp|location=Sequence derived from alignment at Contig_9:590337..590950- (Tribonema minus UTEX_B_3156 )
ATGTCGGTGCCAGAAGTGAGGGTTTTTCAGGTCATGAACGAGGTGCGCCT
GCTGCCGAAGGAAGCATGGAGCCTCAATTGGGAATCTCATATGGGGCTTC
AGCCATCAGCCAAATTCAGTTTGACACAGCGCTCGCGGCGGTATTACGCA
GGGGCCGTAGTAAGCAAGAGGCTCGTGGAGCTGGAGGTGAAGGATCTGAT
CGGCACGCCGCTGCCTCGACTCCCTGACCAGCTATCACGCCTGAAAATCG
TTCAATATTCTCGAGTGCGGAGCATCGGCATTCCGCAAGTCAAGCACATC
GGTTGCCTTGAAATCGATGACCGTACGGATGCTGGGTCCGAGTGCTGGGT
GAGGAAGTTTCTGGAGGGACTCAAGTGTTCTGTGCAGAGCCTCAGCTTGA
AGACCAGCCACTGGGCCGCGTGCACGGCTCTCAGTCTTCCAAGAGGGATC
GAGACAGCGCATTTCGAGAAGCGCCTGGACTACACAGGTGTCCGGAAAGG
ACTGCATCGAGCGCCTCATTCGTCTACATCGTCAATCGGAAGTGCCTTCG
GGGCCTGATGTTGCACAGCGGTGATGAGTGCGCTGCTGCATAGGTGAGCT
GATTTTGCAGGCTG
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Coding sequence (CDS) from alignment at Contig_9:590337..590950-

>mRNA_3554 ID=mRNA_3554|Name=jgi.p|Trimin1|337758|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_9:590337..590950- (Tribonema minus UTEX_B_3156 )
ATGTCGGTGCCAGAAGTGAGGGTTTTTCAGGTCATGAACGAGGTGCGCCT
GCTGCCGAAGGAAGCATGGAGCCTCAATTGGGAATCTCATATGGGGCTTC
AGCCATCAGCCAAATTCAGTTTGACACAGCGCTCGCGGCGGTATTACGCA
GGGGCCGTAGTAAGCAAGAGGCTCGTGGAGCTGGAGGTGAAGGATCTGAT
CGGCACGCCGCTGCCTCGACTCCCTGACCAGCTATCACGCCTGAAAATCG
TTCAATATTCTCGAGTGCGGAGCATCGGCATTCCGCAAGTCAAGCACATC
GGTTGCCTTGAAATCGATGACCGTACGGATGCTGGGTCCGAGTGCTGGGT
GAGGAAGTTTCTGGAGGGACTCAAGTGTTCTGTGCAGAGCCTCAGCTTGA
AGACCAGCCACTGGGCCGCGTGCACGGCTCTCAGTCTTCCAAGAGGGATC
GAGACAGCGCATTTCGAGAAGCGCCTGGACTACACAGGTGTCCGGAAAGG
ACTGCATCGAGCGCCTCATTCGTCTACATCGTCAATCGGAAGTGCCTTCG
GGGCCTGA
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