mRNA_3541 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|143971
Unique NamemRNA_3541
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|143971 vs. uniprot
Match: A0A835YJ99_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ99_9STRA)

HSP 1 Score: 386 bits (991), Expect = 2.020e-135
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1 
Query:    1 VLSGKYRGKAYDDSPASLPGVLQLWRFDQGGAEIAFHTGGSSAQGLTSAFRQFEDKVQLPIYIEIVDGAGGAVAAGAVAQKGMAVSMLSSGDWLRFTVDVSSDAVLIPTWQIATVPPAGTRSVNIRTKIVVDSGSEAKPCQLQGAGGLDLTTPGSAALASYVGGAITLAQGQKQVLTICMQDVTNFKIASITFNEVKTSVI 603
            VLSGKYRGKAYDDSPASLPGVLQLWRFDQGGAEIAFHTGGSSAQGLTSAFRQFEDKVQLPIYIEIVDGAGGAVAAGAVAQKGMAVSMLSSGDWLRFTVDVSSDAVLIPTWQIATVPPAGTRSVNIRTKIVVDSGSEAKPCQLQGAGGLDLTTPGSAALASYVGGAITLAQGQKQVLTICMQDVTNFKIASITFNEVKTSVI
Sbjct:    1 VLSGKYRGKAYDDSPASLPGVLQLWRFDQGGAEIAFHTGGSSAQGLTSAFRQFEDKVQLPIYIEIVDGAGGAVAAGAVAQKGMAVSMLSSGDWLRFTVDVSSDAVLIPTWQIATVPPAGTRSVNIRTKIVVDSGSEAKPCQLQGAGGLDLTTPGSAALASYVGGAITLAQGQKQVLTICMQDVTNFKIASITFNEVKTSVI 201
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143971 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YJ99_9STRA2.020e-135100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:384471..385073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|143971|gw1.9.187.1
Hectar predicted targeting categoryother localisation
TranscriptId144293
TrackFilteredModels1
ProteinId143971
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143971gene_3541Tribonema minus UTEX_B_3156 geneContig_9 384471..385073 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3541_1exon_3541_1Tribonema minus UTEX_B_3156 exonContig_9 384471..385073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3541CDS_3541Tribonema minus UTEX_B_3156 CDSContig_9 384471..385073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143971Trimin1|143971|gw1.9.187.1Tribonema minus UTEX_B_3156 polypeptideContig_9 384471..385073 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3541 ID=mRNA_3541|Name=jgi.p|Trimin1|143971|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_9:384471..385073+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGTTGAGCGGCAAGTACAGAGGAAAGGCCTACGACGATAGCCCTGCGTC
TCTGCCCGGCGTGCTGCAGCTCTGGCGCTTCGACCAGGGCGGTGCTGAGA
TCGCGTTCCACACTGGTGGGTCCTCTGCTCAAGGCCTGACCAGCGCGTTC
AGGCAGTTCGAGGACAAGGTGCAGCTGCCCATATACATCGAGATAGTGGA
TGGCGCTGGTGGTGCAGTGGCAGCAGGAGCGGTGGCGCAGAAGGGCATGG
CCGTCAGCATGCTTTCATCAGGTGACTGGCTGAGGTTCACTGTTGATGTT
AGCTCGGACGCGGTGCTGATCCCTACCTGGCAGATCGCCACTGTGCCGCC
GGCGGGCACTCGGTCAGTGAACATTCGTACGAAAATCGTGGTGGATTCAG
GCAGTGAGGCCAAACCATGTCAGCTGCAGGGCGCAGGGGGGCTAGACTTG
ACTACGCCTGGCTCGGCAGCACTGGCGTCGTACGTTGGTGGTGCAATCAC
CCTGGCGCAAGGACAGAAGCAGGTGCTGACGATCTGCATGCAGGACGTAA
CCAACTTCAAAATTGCCAGCATCACTTTCAACGAAGTGAAGACCAGCGTC
ATT
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protein sequence of jgi.p|Trimin1|143971

>Trimin1|143971|gw1.9.187.1 ID=Trimin1|143971|gw1.9.187.1|Name=jgi.p|Trimin1|143971|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=201bp
VLSGKYRGKAYDDSPASLPGVLQLWRFDQGGAEIAFHTGGSSAQGLTSAF
RQFEDKVQLPIYIEIVDGAGGAVAAGAVAQKGMAVSMLSSGDWLRFTVDV
SSDAVLIPTWQIATVPPAGTRSVNIRTKIVVDSGSEAKPCQLQGAGGLDL
TTPGSAALASYVGGAITLAQGQKQVLTICMQDVTNFKIASITFNEVKTSV
I
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mRNA from alignment at Contig_9:384471..385073+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3541 ID=mRNA_3541|Name=jgi.p|Trimin1|143971|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_9:384471..385073+ (Tribonema minus UTEX_B_3156 )
GTGTTGAGCGGCAAGTACAGAGGAAAGGCCTACGACGATAGCCCTGCGTC
TCTGCCCGGCGTGCTGCAGCTCTGGCGCTTCGACCAGGGCGGTGCTGAGA
TCGCGTTCCACACTGGTGGGTCCTCTGCTCAAGGCCTGACCAGCGCGTTC
AGGCAGTTCGAGGACAAGGTGCAGCTGCCCATATACATCGAGATAGTGGA
TGGCGCTGGTGGTGCAGTGGCAGCAGGAGCGGTGGCGCAGAAGGGCATGG
CCGTCAGCATGCTTTCATCAGGTGACTGGCTGAGGTTCACTGTTGATGTT
AGCTCGGACGCGGTGCTGATCCCTACCTGGCAGATCGCCACTGTGCCGCC
GGCGGGCACTCGGTCAGTGAACATTCGTACGAAAATCGTGGTGGATTCAG
GCAGTGAGGCCAAACCATGTCAGCTGCAGGGCGCAGGGGGGCTAGACTTG
ACTACGCCTGGCTCGGCAGCACTGGCGTCGTACGTTGGTGGTGCAATCAC
CCTGGCGCAAGGACAGAAGCAGGTGCTGACGATCTGCATGCAGGACGTAA
CCAACTTCAAAATTGCCAGCATCACTTTCAACGAAGTGAAGACCAGCGTC
ATT
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Coding sequence (CDS) from alignment at Contig_9:384471..385073+

>mRNA_3541 ID=mRNA_3541|Name=jgi.p|Trimin1|143971|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=603bp|location=Sequence derived from alignment at Contig_9:384471..385073+ (Tribonema minus UTEX_B_3156 )
GTGTTGAGCGGCAAGTACAGAGGAAAGGCCTACGACGATAGCCCTGCGTC
TCTGCCCGGCGTGCTGCAGCTCTGGCGCTTCGACCAGGGCGGTGCTGAGA
TCGCGTTCCACACTGGTGGGTCCTCTGCTCAAGGCCTGACCAGCGCGTTC
AGGCAGTTCGAGGACAAGGTGCAGCTGCCCATATACATCGAGATAGTGGA
TGGCGCTGGTGGTGCAGTGGCAGCAGGAGCGGTGGCGCAGAAGGGCATGG
CCGTCAGCATGCTTTCATCAGGTGACTGGCTGAGGTTCACTGTTGATGTT
AGCTCGGACGCGGTGCTGATCCCTACCTGGCAGATCGCCACTGTGCCGCC
GGCGGGCACTCGGTCAGTGAACATTCGTACGAAAATCGTGGTGGATTCAG
GCAGTGAGGCCAAACCATGTCAGCTGCAGGGCGCAGGGGGGCTAGACTTG
ACTACGCCTGGCTCGGCAGCACTGGCGTCGTACGTTGGTGGTGCAATCAC
CCTGGCGCAAGGACAGAAGCAGGTGCTGACGATCTGCATGCAGGACGTAA
CCAACTTCAAAATTGCCAGCATCACTTTCAACGAAGTGAAGACCAGCGTC
ATT
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