mRNA_33 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA) HSP 1 Score: 284 bits (727), Expect = 2.940e-96 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL
Sbjct: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 168
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA) HSP 1 Score: 168 bits (426), Expect = 9.740e-47 Identity = 95/182 (52.20%), Postives = 111/182 (60.99%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGE-QPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXX-------------SRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
IK + +SWNVLLNAIGRAGQVTEMMAWY EM ++G QP MTTLL NAGKAG + IAEGIWREMR+RQL P V Y+A I CYA A+QPDKAE+V+AEM QSA +KP+ RMRAAG P TW +II AAD + D K+ D+L
Sbjct: 228 IKLDVRSWNVLLNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICAADAVGDIKKVDRL 409
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA) HSP 1 Score: 157 bits (398), Expect = 2.020e-45 Identity = 88/168 (52.38%), Postives = 99/168 (58.93%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
IKP+A +W LLN IG AG V +M+A Y EMC G +PTV TMTTLL +AG AG V I +WREM RQL P V Y+ I CYA K P KAEEVLAEM+QSA I + RMRAAGV P D WK IIHAAD L D K+ADQL
Sbjct: 47 IKPSAPTWGALLNTIGTAGHVEKMLAKYKEMCTIGPRPTVITMTTLLDHAG-AGEVDIFNDLWREMHYRQLVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHAADALDDVKKADQL 213
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA) HSP 1 Score: 160 bits (405), Expect = 2.110e-44 Identity = 95/195 (48.72%), Postives = 108/195 (55.38%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGE-QPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXX--------------------------SRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
I+P+ QSW LL+AIGRAGQ+ EMMA Y EMC TG QP + MTTLL NAGKAG VSIAEGIW EMR+RQL P V Y+A I CYA AKQPDK E VLAE ++SA +KP+ RMRAAGV P TW+SIIHA D L D K+ D L
Sbjct: 121 IRPDLQSWGALLHAIGRAGQLAEMMACYREMCATGGVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMFTRACADFRTVLSTMRPALLLVRPPCMVSLMQAYINNKRLDEAERVIGRMRAAGVEPILGTWRSIIHAGDELGDIKKVDLL 315
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CK12_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK12_9STRA) HSP 1 Score: 153 bits (387), Expect = 6.940e-44 Identity = 76/111 (68.47%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGE-QPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPN 330
+KPN +SW LL+AIGRAGQV EMMAWY EM +G QP + ++LA+AG AG + IAEGIWREMR+RQL+P Y YSAFI CYA AKQPDKAE VL EMVQSATIKPN
Sbjct: 104 MKPNERSWGALLDAIGRAGQVAEMMAWYAEMLTSGGLQPNNVILNSMLAHAGTAGELGIAEGIWREMRDRQLEPNSYSYSAFINCYATAKQPDKAEGVLTEMVQSATIKPN 214
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.290e-43 Identity = 81/156 (51.92%), Postives = 93/156 (59.62%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGA-VSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHA 465
IKPN +SW LL+AIG+AGQV +MMAWYGEM +G + +AEGIWREMR+RQL+P V+ Y+A I CYAMAKQPDKAE+VLAEMVQSATIKPN RMRAAGV P TW IIHA
Sbjct: 3 IKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 158
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.310e-40 Identity = 110/173 (63.58%), Postives = 120/173 (69.36%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTL-----LANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
IKPN SW LL+A GRAG + M W G+ T L + AG +S+AEGIWREMR+RQL+P Y Y+A I CYA AKQPDKAE VL EMVQSATIKP+XXXXXXXXXXXXXXXXXXXXX SRMRAAGV P TWKSIIHAADTL D KRADQL
Sbjct: 108 IKPNDWSWAALLDAFGRAGGRNDGMVW-------GDGYNRRTANCLHHDHSAESCWAAGELSVAEGIWREMRDRQLEPNAYSYNASINCYATAKQPDKAEGVLTEMVQSATIKPDXXXXXXXXXXXXXXXXXXXXXHVISRMRAAGVQPIIGTWKSIIHAADTLGDIKRADQL 273
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA) HSP 1 Score: 145 bits (365), Expect = 2.970e-39 Identity = 82/169 (48.52%), Postives = 93/169 (55.03%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAV-SIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
IKPNA SW LL+AIG+AGQV EMMAWYGEM +G I E IWR+M +RQL+P V Y+ I CYA A QPD+AE VLAEM QSA +KPN RMRAAGV PD TW+ IIHAAD L D K+AD L
Sbjct: 121 IKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGDIKKADGL 289
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CJ97_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ97_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.240e-37 Identity = 78/161 (48.45%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRD 483
IKP QSWNVLL+AIGRAGQ EMMAWYG+MCQTGEQP V I CYA AK P KAEEVLAEMVQSATIKPN SRMRAAGV P WKSIIHAAD L D
Sbjct: 1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA) HSP 1 Score: 127 bits (320), Expect = 7.870e-32 Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 34 LNAIGRAGQVTEMMAWYGEMCQTGEQ-PTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPN 330
L+AIG+AGQV EMMAWYGEM G P + MTTLL NAGKAG V IAEGIW E R+RQL P Y+A I CYA A+QPDKAE VLAEMVQSA +KP+
Sbjct: 316 LDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPD 415 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_33 ID=mRNA_33|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_3:270263..272158+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCAAACCGAATGCGCAGAGCTGGAATGTGCTGTTGAATGCCATTGGCAGback to top protein sequence of jgi.p|Trimin1|155085 >Trimin1|155085|gw1.3.532.1 ID=Trimin1|155085|gw1.3.532.1|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAback to top mRNA from alignment at Contig_3:270263..272158+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_33 ID=mRNA_33|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1896bp|location=Sequence derived from alignment at Contig_3:270263..272158+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_3:270263..272158+ >mRNA_33 ID=mRNA_33|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_3:270263..272158+ (Tribonema minus UTEX_B_3156 )back to top |