mRNA_33 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155085
Unique NamemRNA_33
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z497_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z497_9STRA)

HSP 1 Score: 284 bits (727), Expect = 2.940e-96
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
            IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL
Sbjct:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 168          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CEZ1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ1_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.740e-47
Identity = 95/182 (52.20%), Postives = 111/182 (60.99%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGE-QPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXX-------------SRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
            IK + +SWNVLLNAIGRAGQVTEMMAWY EM ++G  QP    MTTLL NAGKAG + IAEGIWREMR+RQL P V  Y+A I CYA A+QPDKAE+V+AEM QSA +KP+                                      RMRAAG  P   TW +II AAD + D K+ D+L
Sbjct:  228 IKLDVRSWNVLLNAIGRAGQVTEMMAWYREMLKSGGLQPDTVLMTTLLDNAGKAGELGIAEGIWREMRDRQLAPDVKAYNALITCYATARQPDKAEQVIAEMCQSAAVKPDAIALTSCVPLNMLMDVCYNLMQAYINDERLDDADRVIGRMRAAGADPISGTWTTIICAADAVGDIKKVDRL 409          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CDU9_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.020e-45
Identity = 88/168 (52.38%), Postives = 99/168 (58.93%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
            IKP+A +W  LLN IG AG V +M+A Y EMC  G +PTV TMTTLL +AG AG V I   +WREM  RQL P V  Y+  I CYA  K P KAEEVLAEM+QSA I  +                         RMRAAGV P  D WK IIHAAD L D K+ADQL
Sbjct:   47 IKPSAPTWGALLNTIGTAGHVEKMLAKYKEMCTIGPRPTVITMTTLLDHAG-AGEVDIFNDLWREMHYRQLVPDVKSYNTRINCYATVKDPGKAEEVLAEMIQSAAITLDAISFNSLMKAYYCSGRLNEAELVIDRMRAAGVQPTADIWKGIIHAADALDDVKKADQL 213          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CEM5_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.110e-44
Identity = 95/195 (48.72%), Postives = 108/195 (55.38%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGE-QPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXX--------------------------SRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
            I+P+ QSW  LL+AIGRAGQ+ EMMA Y EMC TG  QP +  MTTLL NAGKAG VSIAEGIW EMR+RQL P V  Y+A I CYA AKQPDK E VLAE ++SA +KP+                                                   RMRAAGV P   TW+SIIHA D L D K+ D L
Sbjct:  121 IRPDLQSWGALLHAIGRAGQLAEMMACYREMCATGGVQPNLVIMTTLLDNAGKAGEVSIAEGIWSEMRDRQLAPDVKTYNALITCYATAKQPDKVEGVLAERIRSAAVKPDAIMFTRACADFRTVLSTMRPALLLVRPPCMVSLMQAYINNKRLDEAERVIGRMRAAGVEPILGTWRSIIHAGDELGDIKKVDLL 315          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CK12_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK12_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.940e-44
Identity = 76/111 (68.47%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGE-QPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPN 330
            +KPN +SW  LL+AIGRAGQV EMMAWY EM  +G  QP    + ++LA+AG AG + IAEGIWREMR+RQL+P  Y YSAFI CYA AKQPDKAE VL EMVQSATIKPN
Sbjct:  104 MKPNERSWGALLDAIGRAGQVAEMMAWYAEMLTSGGLQPNNVILNSMLAHAGTAGELGIAEGIWREMRDRQLEPNSYSYSAFINCYATAKQPDKAEGVLTEMVQSATIKPN 214          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z6J3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J3_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.290e-43
Identity = 81/156 (51.92%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGA-VSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHA 465
            IKPN +SW  LL+AIG+AGQV +MMAWYGEM  +G                     + +AEGIWREMR+RQL+P V+ Y+A I CYAMAKQPDKAE+VLAEMVQSATIKPN                         RMRAAGV P   TW  IIHA
Sbjct:    3 IKPNIRSWGALLDAIGKAGQVADMMAWYGEMLTSGGXXXXXXXXXXXXXXXXXXRELGVAEGIWREMRDRQLEPDVWSYAALITCYAMAKQPDKAEDVLAEMVQSATIKPNAITFNSIMKAYMNDKRLDEAERVIGRMRAAGVEPILGTWTGIIHA 158          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835YW77_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW77_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.310e-40
Identity = 110/173 (63.58%), Postives = 120/173 (69.36%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTL-----LANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
            IKPN  SW  LL+A GRAG   + M W       G+     T   L       +   AG +S+AEGIWREMR+RQL+P  Y Y+A I CYA AKQPDKAE VL EMVQSATIKP+XXXXXXXXXXXXXXXXXXXXX   SRMRAAGV P   TWKSIIHAADTL D KRADQL
Sbjct:  108 IKPNDWSWAALLDAFGRAGGRNDGMVW-------GDGYNRRTANCLHHDHSAESCWAAGELSVAEGIWREMRDRQLEPNAYSYNASINCYATAKQPDKAEGVLTEMVQSATIKPDXXXXXXXXXXXXXXXXXXXXXHVISRMRAAGVQPIIGTWKSIIHAADTLGDIKRADQL 273          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z5Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z3_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.970e-39
Identity = 82/169 (48.52%), Postives = 93/169 (55.03%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAV-SIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRDTKRADQL 504
            IKPNA SW  LL+AIG+AGQV EMMAWYGEM  +G                       I E IWR+M +RQL+P V  Y+  I CYA A QPD+AE VLAEM QSA +KPN                         RMRAAGV PD  TW+ IIHAAD L D K+AD L
Sbjct:  121 IKPNAHSWGALLDAIGKAGQVAEMMAWYGEMLASGXXXXXXXXXXXXXXXXXXXXEPGIVERIWRDMLDRQLEPDVKSYNTRISCYATANQPDQAEGVLAEMCQSAAVKPNAFCFNSLMQAYINDKRLDEAERIIGRMRAAGVEPDFCTWRVIIHAADELGDIKKADGL 289          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A836CJ97_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ97_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.240e-37
Identity = 78/161 (48.45%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    1 IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPNXXXXXXXXXXXXXXXXXXXXXXXXSRMRAAGVPPDQDTWKSIIHAADTLRD 483
            IKP  QSWNVLL+AIGRAGQ  EMMAWYG+MCQTGEQP V                                         I CYA AK P KAEEVLAEMVQSATIKPN                        SRMRAAGV P    WKSIIHAAD L D
Sbjct:    1 IKPTVQSWNVLLDAIGRAGQAAEMMAWYGKMCQTGEQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINCYATAKDPRKAEEVLAEMVQSATIKPNAITFTSVMKAYIKVQRLDDAEHVISRMRAAGVQPSLPAWKSIIHAADALGD 161          
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Match: A0A835Z1B2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 7.870e-32
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   34 LNAIGRAGQVTEMMAWYGEMCQTGEQ-PTVYTMTTLLANAGKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAEMVQSATIKPN 330
            L+AIG+AGQV EMMAWYGEM   G   P +  MTTLL NAGKAG V IAEGIW E R+RQL P    Y+A I CYA A+QPDKAE VLAEMVQSA +KP+
Sbjct:  316 LDAIGKAGQVAEMMAWYGEMLAIGGVLPDLVIMTTLLDNAGKAGEVRIAEGIWSETRDRQLAPNNRTYNALINCYATARQPDKAEGVLAEMVQSAAVKPD 415          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155085 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z497_9STRA2.940e-96100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CEZ1_9STRA9.740e-4752.20PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CDU9_9STRA2.020e-4552.38PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CEM5_9STRA2.110e-4448.72PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A836CK12_9STRA6.940e-4468.47PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835Z6J3_9STRA1.290e-4351.92Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YW77_9STRA1.310e-4063.58PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835Z5Z3_9STRA2.970e-3948.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJ97_9STRA3.240e-3748.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z1B2_9STRA7.870e-3267.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:270263..272158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155085|gw1.3.532.1
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
DescriptionPentatricopeptide repeat-containing protein
COG categoryS
Max annot lvl35493|Streptophyta
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37R8Y@33090|Viridiplantae,3G8FN@35493|Streptophyta,4JEU7@91835|fabids
Evalue1.88e-07
Seed ortholog3847.GLYMA10G05630.1
Hectar predicted targeting categoryother localisation
TranscriptId155407
TrackFilteredModels1
ProteinId155085
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155085gene_33Tribonema minus UTEX_B_3156 geneContig_3 270263..272158 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_33_1exon_33_1Tribonema minus UTEX_B_3156 exonContig_3 270263..270609 +
exon_33_2exon_33_2Tribonema minus UTEX_B_3156 exonContig_3 272002..272158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_33CDS_33Tribonema minus UTEX_B_3156 CDSContig_3 270263..270609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155085Trimin1|155085|gw1.3.532.1Tribonema minus UTEX_B_3156 polypeptideContig_3 270263..272158 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_33 ID=mRNA_33|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=504bp|location=Sequence derived from alignment at Contig_3:270263..272158+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCAAACCGAATGCGCAGAGCTGGAATGTGCTGTTGAATGCCATTGGCAG
AGCGGGTCAGGTGACCGAAATGATGGCATGGTACGGGGAGATGTGTCAAA
CAGGAGAACAGCCAACTGTTTACACCATGACCACTCTGCTGGCTAATGCT
GGGAAAGCGGGGGCGGTGAGCATTGCTGAGGGCATCTGGAGAGAGATGCG
TGAGCGCCAGCTGGACCCTGGTGTTTACGGCTACTCTGCTTTCATCAAAT
GCTATGCAATGGCAAAGCAGCCGGACAAGGCGGAGGAAGTGCTTGCGGAG
ATGGTCCAGTCTGCCACCATCAAGCCGAATGTCATCACGTTTAACAGCAT
CATGCAGGCATACATCGTGGTAGAGCGCCTGGACGCAGCAGAGCATGTCA
TCAGCAGGATGCGTGCTGCAGGGGTACCGCCAGACCAGGATACATGGAAA
AGCATCATACATGCTGCAGACACACTTCGTGATACCAAGAGGGCAGACCA
GTTG
back to top

protein sequence of jgi.p|Trimin1|155085

>Trimin1|155085|gw1.3.532.1 ID=Trimin1|155085|gw1.3.532.1|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=168bp
IKPNAQSWNVLLNAIGRAGQVTEMMAWYGEMCQTGEQPTVYTMTTLLANA
GKAGAVSIAEGIWREMRERQLDPGVYGYSAFIKCYAMAKQPDKAEEVLAE
MVQSATIKPNVITFNSIMQAYIVVERLDAAEHVISRMRAAGVPPDQDTWK
SIIHAADTLRDTKRADQL
back to top

mRNA from alignment at Contig_3:270263..272158+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_33 ID=mRNA_33|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1896bp|location=Sequence derived from alignment at Contig_3:270263..272158+ (Tribonema minus UTEX_B_3156 )
ATCAAACCGAATGCGCAGAGCTGGAATGTGCTGTTGAATGCCATTGGCAG AGCGGGTCAGGTGACCGAAATGATGGCATGGTACGGGGAGATGTGTCAAA CAGGAGAACAGCCAACTGTTTACACCATGACCACTCTGCTGGCTAATGCT GGGAAAGCGGGGGCGGTGAGCATTGCTGAGGGCATCTGGAGAGAGATGCG TGAGCGCCAGCTGGACCCTGGTGTTTACGGCTACTCTGCTTTCATCAAAT GCTATGCAATGGCAAAGCAGCCGGACAAGGCGGAGGAAGTGCTTGCGGAG ATGGTCCAGTCTGCCACCATCAAGCCGAATGTCATCACGTTTAACAGGTG CGTAAGATGGAATAATGGTACTGCTGCTTTTGTGCTACCAAGTGCGTGTT ATGGTGCATATATGCAGATCAGCCATTTCATGGAGAGTGCAATACAGCCT ACTTGAAGTTTGTGGTGTGATGCGATGTGACAGAGAAATATCAAGCGTAC CACCCACTGCATTGCAGGAGATGACATATGGTGGGGTGATAGCCTGAATA ACACAACAGTGCTCATTAGCATCTGCAGCAGCTATACTTGCCAAAGTACT GTAGTGCTCAATTCCATCACGTCCGACGTGAGTCAATTTATTGTACCGGT ATTTGATTGTTCTGGTGCATGACATGCAAAGCATCAATGATCAACAACCC AGCAAACTGTTCATGCAGCTGCATCCGTCACGGTGCTGCCAATGCTCTGC TATGGGCCTCAGGCTGCTCTGTCATTAAGCTATGGCCAAGCATGCAGTGC ATGCCATTGCAGCTTACTGAAGCACCATGGCTCTGCAGCTGCAATCATGT TGTGACACTGCACTGTTCAGTAGCCCAAGAAAGGTAGGCATCTAAAATGC GTGCACACAAGTCAGTGCAAGGCTCATCACATCAGCTGCATGGGCCTTCA TGATTGAGTCCACCTGCATCTTATACTACTTCTATGGTAATACATACTTC TATATAGGGTAGCACAAAAGCGTATTTTGAAGCTTATTCTGAGTTCATGT GCCGCGTTTGTAGAGGACTGTATGCTCGGAATCGAGCAGACTTGCCACTT GCCTCACAACTACGCCCTTCGCACTGCCATGTTGTCGTTGTGAAATTTGC TCAAGATGTATTCCTGGTTGCCGAATACACTCCAAATGCGGAGTATTTGT GTGGCCAAATACGTTTTCGTGCAACCCTAAAGACTACATATACAAAGATG CCCAACATGTTATTGTATACCTGCCAGTGGGGCATGCGCAGCATTCATGC GTTGCCATGAGTTGATTTGTCATGATGAATACAACGCCATGGGAGGATCG ATGGTGTACACCTTTTCAAAGGCCCATGATTGTCCGGCTCCGCTTTTAAG ACAAGTAGTTGCCATTTTGAATGCTGCACAAATATAGTATCATGCTATGT TCATGTTGTATCATCTTGCATTGCACATACTATTAGTTCTGTGAACGCGT GCAACTCTAGTACTACGGAAGTGCACATACTATGTTGATGCATACATGTA CCCGCCGATCTAGTCTTAATAAGCTGATTGTTAACAATTGGCATTCTGTA GGGCGCAAGTGCAGGCACATACCATGCAGCCGCCAATGACTGCTTTCCGG CTGCAGTAGTCAGCTCTAAGACTTGCAGTGAACGCCTTTTGCTCAATATG TTGCCTACCGCTTTGATTGCTCTTATATCAAATGATCAGCATCATGCAGG CATACATCGTGGTAGAGCGCCTGGACGCAGCAGAGCATGTCATCAGCAGG ATGCGTGCTGCAGGGGTACCGCCAGACCAGGATACATGGAAAAGCATCAT ACATGCTGCAGACACACTTCGTGATACCAAGAGGGCAGACCAGTTG
back to top

Coding sequence (CDS) from alignment at Contig_3:270263..272158+

>mRNA_33 ID=mRNA_33|Name=jgi.p|Trimin1|155085|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=504bp|location=Sequence derived from alignment at Contig_3:270263..272158+ (Tribonema minus UTEX_B_3156 )
ATCAAACCGAATGCGCAGAGCTGGAATGTGCTGTTGAATGCCATTGGCAG
AGCGGGTCAGGTGACCGAAATGATGGCATGGTACGGGGAGATGTGTCAAA
CAGGAGAACAGCCAACTGTTTACACCATGACCACTCTGCTGGCTAATGCT
GGGAAAGCGGGGGCGGTGAGCATTGCTGAGGGCATCTGGAGAGAGATGCG
TGAGCGCCAGCTGGACCCTGGTGTTTACGGCTACTCTGCTTTCATCAAAT
GCTATGCAATGGCAAAGCAGCCGGACAAGGCGGAGGAAGTGCTTGCGGAG
ATGGTCCAGTCTGCCACCATCAAGCCGAATGTCATCACGTTTAACAGCAT
CATGCAGGCATACATCGTGGTAGAGCGCCTGGACGCAGCAGAGCATGTCA
TCAGCAGGATGCGTGCTGCAGGGGTACCGCCAGACCAGGATACATGGAAA
AGCATCATACATGCTGCAGACACACTTCGTGATACCAAGAGGGCAGACCA
GTTG
back to top