mRNA_3367 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161492
Unique NamemRNA_3367
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A836CJU6_9STRA (Midasin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU6_9STRA)

HSP 1 Score: 557 bits (1436), Expect = 1.340e-199
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
Query:    1 MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQEA 930
            MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQEA
Sbjct:    1 MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQEA 310          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 8.220e-96
Identity = 165/283 (58.30%), Postives = 207/283 (73.14%), Query Frame = 1
Query:   73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921
            W RLR++T   SQRLCEQLRLVL P VATKL+GDYR+GKRINMRRVI YIASGFR+DKIWLRRTKPAKR YQ+L+AIDDSESM D GAG +A+AA+ +VASGLTQLE GQ+AVARFGE + LLHGF D FTE++GA ++  F FDQ  T T   LE     +E A                PRQLV ++SDG  +RE++  + + +R+M++RGQL+ LI++D+ GD SI+      +  G +V   YLD YPFP Y++L  ++ALP+ LADALRQWFEL+QRQ
Sbjct: 5247 WGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQILMAIDDSESMADCGAGALALAAMTMVASGLTQLEAGQLAVARFGEDLDLLHGFGDPFTEEAGAKIVDGFTFDQKRTNTAHTLEGLVSLLEEARSGFSMSSGGVGSKGTPRQLVLLLSDGRFDRENKDRLRKLVREMNERGQLLVLIVLDKEGDTSILKTREATYVNGKLVLTSYLDKYPFPLYMLLNHIEALPETLADALRQWFELLQRQ 5529          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 1.110e-95
Identity = 166/283 (58.66%), Postives = 206/283 (72.79%), Query Frame = 1
Query:   73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921
            W RLR++T   SQRLCEQLRLVL P VATKL+GDYR+GKRINMRRVI YIASGFR+DKIWLRRTKPAKR YQ+L+AIDDSESM D GAG +A+AA+  VASGLTQLE GQ+AVARFGE + LLHGF D FTE++GA ++  F FDQ  T T   LE     +E A                PRQLV ++SDG  +RE++  + + +R+M++RGQL+ LI++D+ GD SI+      +  G +V   YLD YPFP YI+L  ++ALP+ LADALRQWFEL+QRQ
Sbjct: 4479 WGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQILMAIDDSESMADCGAGALALAAMTTVASGLTQLEAGQLAVARFGEDLDLLHGFGDPFTEEAGAKLVDGFTFDQKCTNTAHTLEGLVSLLEEARNGFSMSSGGVGSKGTPRQLVLLLSDGRFDRENKDRLRKLVREMNERGQLLVLIVLDKEGDTSILKTREATYVNGKLVLSSYLDKYPFPLYILLNHIEALPETLADALRQWFELLQRQ 4761          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: W7TQS4_9STRA (Midasin-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQS4_9STRA)

HSP 1 Score: 299 bits (765), Expect = 7.540e-95
Identity = 163/287 (56.79%), Postives = 207/287 (72.13%), Query Frame = 1
Query:   73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPR---QLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAF-ARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921
            WAR R+ +AP + RLCEQLRLVL PQVA+KL GDYR+GKRINMRRVI YIASG+R+DKIWLRRTKPAKRAYQVL+AIDDS SMK  GA ++A+ ALA +ASG++ LE+G++ VA FGE + LLHGF + +TED+GA VL+SF F+Q  T   +LLE     +E A               AP    QLVFV+SDG  ER  +  + R +R M ++GQL+ L+I+DR    SI     V + A GGV   +YLD YPFPYY+VLRD+QALP+++ADAL+QWFEL+ R+
Sbjct:  234 WARYRSASAPLALRLCEQLRLVLEPQVASKLGGDYRSGKRINMRRVIPYIASGYRKDKIWLRRTKPAKRAYQVLLAIDDSGSMKHFGAEDMALTALATLASGMSALEIGEVGVAAFGETLSLLHGFGEPWTEDAGARVLSSFTFEQEATDGALLLESVSAALEMAARGARQASAASQGPGAPAKIFQLVFVVSDGSFERGDKATLRRLVRQMGEKGQLLVLLIVDR----SIEERQEVEYSATGGVRLSKYLDSYPFPYYVVLRDVQALPEVMADALKQWFELLGRE 516          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A4D9D334_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D334_9STRA)

HSP 1 Score: 297 bits (761), Expect = 6.760e-88
Identity = 162/287 (56.45%), Postives = 206/287 (71.78%), Query Frame = 1
Query:   73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPR---QLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAF-ARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921
            WAR R+ +AP + RLCEQLRLVL PQVA+KL GDYR+GKRINMRRVI YIASG+R+DKIWLRRTKPAKRAYQVL+AIDDS SMK  GA ++A+ ALA +ASG++ LE+G++ VA FGE + LLHGF + +TED+GA VL+SF F+Q  T   +LLE     +E A                P    QLVFV+SDG  ER  +  + R +R M ++GQL+ L+I+DR    SI     V + A GGV   +YLD YPFPYY+VLRD+QALP+++ADAL+QWFEL+ R+
Sbjct: 6112 WARYRSASAPLALRLCEQLRLVLEPQVASKLGGDYRSGKRINMRRVIPYIASGYRKDKIWLRRTKPAKRAYQVLLAIDDSGSMKHFGAEDMALTALATLASGMSALEIGEVGVAAFGETLSLLHGFGEPWTEDAGARVLSSFTFEQEATDGALLLESVSAALEMAARGARQASDASQGQGVPAKIFQLVFVVSDGSFERGDKATLRRLVRQMGEKGQLLVLLIVDR----SIEERQEVEYSATGGVRLSKYLDSYPFPYYVVLRDVQALPEVMADALKQWFELLGRE 6394          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7R9YWN0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YWN0_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.070e-87
Identity = 145/290 (50.00%), Postives = 209/290 (72.07%), Query Frame = 1
Query:   58 EAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGG-----DDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELV 912
            +A  RW+ ++A T   S+RLCE+LRLV+ P VATKL+GDYR GKRINM+RVIGYIASG+R+DKIWLRRTKPAKR Y+VL+A+DDSESMK  GAG++A+AALA +A+G++QLE+G++ VA FGE M L+H F   FT +SGA+++++F F+Q  TRT + +E A   +E++               +   LVF+ISDG  ER+SR  + + +R+M++R  L+ +II++         DSI++M  V F +G    + +++ YPFPYY+VL D+ +LP++L DALRQWFE++
Sbjct:  361 QAQLRWSEIQAETNNLSRRLCEKLRLVMEPLVATKLQGDYRTGKRINMKRVIGYIASGYRKDKIWLRRTKPAKRDYRVLLAVDDSESMKKSGAGDMALAALATLANGMSQLEIGELGVASFGEEMSLVHSFQVPFTSESGANLVSNFSFNQKRTRTALCVESAMSVLESSTGT-----------SSSLHLVFIISDGRIERDSRSSLRKLVREMAERNVLLVMIIVEGNKRKEKKKDSIIHMKEVTFHKGKPKMKHFIEDYPFPYYMVLEDMASLPEVLGDALRQWFEML 639          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7S2SE58_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SE58_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.510e-86
Identity = 150/295 (50.85%), Postives = 215/295 (72.88%), Query Frame = 1
Query:   58 EAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIID-RGGD-----DSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQ 924
            EA  RW+++++ T   S+RLCE+LRLV+ P VATKLRGDYR GKRINM+RVIGYIASG+++DKIWLRRTKPAKR Y+VL+A+D+SESMK  GAG++A++ALA +A+G++QLEVG++ +A FGE M+LLH F+  FT +SGA+V+ +F FD   TRT + +E A   +E+                +  QLVF+ISDG  ER+SR+ + + +R+MS+R  LV ++I++ + G+     DSI+ M  V F +G    + ++D YPFPYY+VL D+ +LP++L DALRQWFE++ + Q
Sbjct:  557 EARHRWSKIQSETNVLSRRLCEKLRLVMEPLVATKLRGDYRTGKRINMKRVIGYIASGYQKDKIWLRRTKPAKRNYRVLLAVDNSESMKKSGAGDMALSALATLANGMSQLEVGELGIASFGEDMKLLHPFNLPFTSESGANVVCNFKFDDQRTRTALCVESAIVALESQAES-----------SSSLQLVFIISDGRIERDSRQNLRKLVREMSERNILVVMMIVEGKQGEGSQKKDSIIQMKEVTFEKGKPKMKHFIDDYPFPYYMVLEDMNSLPEVLGDALRQWFEMLSQIQ 840          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7S0CIB3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIB3_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.380e-85
Identity = 148/292 (50.68%), Postives = 210/292 (71.92%), Query Frame = 1
Query:   61 AHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGG---DDSIVNMNSVAF-ARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQ 924
            A  +WA L   T   S+RLCE+LRLVL P VA+KL+GDYR+GKRINM+RVIGYIASG+R+DKIWLRRTKPAKR Y+VL+A+DDSESMK  G+G +A+AALA +A+G++QLE+G++ +A FGE M+LLH F+  FT DSG ++++ F FD+  TRT + +E A   +E A               +  QLVF+ISDG  ER++R ++ R +R+MS+R  L+  I+++      +DSI++M  V+F A+G      ++D YPFPYY++L D+ +LP++L DALRQWFE++ + Q
Sbjct:  580 ARAKWAELNVETTNLSRRLCEKLRLVLEPLVASKLQGDYRSGKRINMKRVIGYIASGYRKDKIWLRRTKPAKRDYRVLLAVDDSESMKKSGSGEMALAALATIANGMSQLEIGELGIASFGEEMRLLHPFNLPFTLDSGTNLMSHFKFDEQRTRTALCVESAIAALENAAGLSSRGI------SSSLQLVFIISDGRIERDNRSKLRRLVREMSERNILLVTIVVEGNNAKKEDSIIHMKEVSFDAKGRPKVTHFIDDYPFPYYLILEDMASLPEVLGDALRQWFEMLSQIQ 865          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7S4QTU3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QTU3_9STRA)

HSP 1 Score: 278 bits (711), Expect = 8.180e-84
Identity = 141/287 (49.13%), Postives = 208/287 (72.47%), Query Frame = 1
Query:   70 RWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIID------RGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELV 912
            +W++++A T   S+RLCE+LRLV+ P VATKL+GDYR GKRINM+RVIGYIASG+R+DKIWLRRTKP+KR Y+VL+A+DDSESM+  GAG++A+AALA++++G+ QLE+G++ VA FGE M+LLH F  AFT +SG  ++++F FDQ  TR  + +E A   +E                D+  +LVF+ISDG  ER+SR ++ + +R+M+++  L+ +II++      +   DSIVNM  V F  G    + +++ YPFPYY++L ++ +LP++L DALRQWFE++
Sbjct:  538 KWSQIQANTLNLSRRLCEKLRLVMEPLVATKLQGDYRTGKRINMKRVIGYIASGYRKDKIWLRRTKPSKRNYRVLLAVDDSESMQKSGAGDMALAALAVLSNGMNQLEIGELGVASFGEEMKLLHQFHQAFTSESGPALVSNFTFDQKRTRMALCVESAIAALEG-------------DTDSSMKLVFLISDGRIERDSRSKLRKLVREMTEKNILLVVIIVEGDATAKKTNKDSIVNMKEVTFENGKPKVKYFIEDYPFPYYMILEEMSSLPEVLGDALRQWFEML 811          
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A1E7FXA3_9STRA (VWFA domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXA3_9STRA)

HSP 1 Score: 261 bits (668), Expect = 8.860e-84
Identity = 139/260 (53.46%), Postives = 184/260 (70.77%), Query Frame = 1
Query:  139 LAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIID--RGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELV 912
            + P VA+KLRGDYR GKRINM+RVIGYIASG+R+DKIWLRRTKPAKR Y+VL+A+DDSESMK  GAG +A+ A+A VA G+ QLEVG++ VA FGE M+L+H F   FT +SG  V+ +F FDQ  TR  + +E A   +E +               +  QLVF+ISDG  ER+SR  + R IR+M +R  L+A+II++      DSI+NM  V F +G  V +R++D YPFPYYIVL D+ +LP++L DAL+QWFE++
Sbjct:    1 MEPLVASKLRGDYRTGKRINMKRVIGYIASGYRKDKIWLRRTKPAKRNYRVLLAVDDSESMKKSGAGEMALHAMATVAVGMNQLEVGELGVASFGEDMKLVHPFHMPFTSESGVSVVRNFKFDQQRTRIALCVESAMAALEDSGDR------------SSMQLVFLISDGRIERDSRSALKRLIREMMERNILLAMIIVEGKEKKKDSILNMKEVTFEKGKPVVKRFIDDYPFPYYIVLDDVVSLPEVLGDALKQWFEML 248          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJU6_9STRA1.340e-199100.00Midasin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
D7FL28_ECTSI8.220e-9658.30Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE1.110e-9558.66Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
W7TQS4_9STRA7.540e-9556.79Midasin-like protein n=1 Tax=Nannochloropsis gadit... [more]
A0A4D9D334_9STRA6.760e-8856.45VWFA domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7R9YWN0_9STRA1.070e-8750.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2SE58_9STRA1.510e-8650.85Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0CIB3_9STRA2.380e-8550.68Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4QTU3_9STRA8.180e-8449.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FXA3_9STRA8.860e-8453.46VWFA domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:437686..439530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161492|e_gw1.17.93.1
BRITEko00000,ko00001,ko03009
KEGG Pathwayko03008,map03008
KEGG koko:K14572
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5271@1|root,KOG1808@2759|Eukaryota
Evalue1.35e-96
Seed ortholog2880.D7FL28
Hectar predicted targeting categorymitochondrion
TranscriptId161814
TrackFilteredModels1
ProteinId161492
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161492gene_3367Tribonema minus UTEX_B_3156 geneContig_17 437686..439530 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3367_1exon_3367_1Tribonema minus UTEX_B_3156 exonContig_17 437686..437835 +
exon_3367_2exon_3367_2Tribonema minus UTEX_B_3156 exonContig_17 438089..438226 +
exon_3367_3exon_3367_3Tribonema minus UTEX_B_3156 exonContig_17 438886..439530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3367CDS_3367Tribonema minus UTEX_B_3156 CDSContig_17 437686..437835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161492Trimin1|161492|e_gw1.17.93.1Tribonema minus UTEX_B_3156 polypeptideContig_17 437686..439530 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3367 ID=mRNA_3367|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_17:437686..439530+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCTCGCGCAGGCGTGGGCGCGGGGCGGCGCGGGGGGGGCGCTGAG
CGCTGGCGAGGCGCACCGCCGCTGGGCGCGGCTGCGCGCGCTGACGGCGC
CGGCGTCGCAGCGCCTGTGCGAGCAGCTGCGCCTGGTGCTCGCGCCGCAG
GTGGCGACCAAGCTGCGCGGCGACTACCGCGCCGGCAAGCGCATCAACAT
GCGCCGCGTCATCGGCTACATTGCCAGCGGCTTCCGGCGCGACAAGATCT
GGCTGCGCCGCACCAAGCCCGCCAAGCGCGCTTATCAGGTGCTGGTGGCG
ATCGACGACTCGGAGTCCATGAAGGACCGCGGCGCCGGCAACGTGGCCAT
GGCGGCGCTCGCCCTCGTTGCGTCCGGCCTGACGCAGCTGGAGGTCGGGC
AGATGGCCGTCGCGCGCTTCGGCGAGCGCATGCAGCTGCTCCACGGCTTC
GACGACGCCTTCACGGAGGACAGCGGCGCGCACGTGCTCGCGTCGTTCGG
CTTCGACCAGGCGCTCACGCGCACGGGCGTGCTGCTGGAGCAGGCGCAGA
GGTTCATGGAGGCGGCGGCGGACGACGCGGCGGCGCGCGGCGGCGGCGGC
GGCGGCGGCGACGCGCCGCGACAGCTCGTCTTTGTCATCTCGGACGGGCA
CTGCGAGCGGGAGTCGCGCCGCGAGGTGGCGCGCCGCATCCGCGACATGA
GCGACCGCGGCCAGCTCGTGGCGCTGATCATCATCGACAGGGGCGGCGAC
GACAGCATCGTCAACATGAACTCGGTCGCGTTCGCGCGCGGCGGCGTCGT
TACGCGCCGCTACCTCGACGGCTACCCGTTCCCGTACTACATCGTGCTGC
GCGACCTGCAGGCGCTGCCGGACATCCTCGCCGACGCGCTGCGCCAGTGG
TTCGAGCTCGTGCAGCGGCAGCAGGAGGCATAG
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protein sequence of jgi.p|Trimin1|161492

>Trimin1|161492|e_gw1.17.93.1 ID=Trimin1|161492|e_gw1.17.93.1|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQ
VATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVA
IDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGF
DDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAADDAAARGGGG
GGGDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGD
DSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQW
FELVQRQQEA*
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mRNA from alignment at Contig_17:437686..439530+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3367 ID=mRNA_3367|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1845bp|location=Sequence derived from alignment at Contig_17:437686..439530+ (Tribonema minus UTEX_B_3156 )
ATGCGGCTCGCGCAGGCGTGGGCGCGGGGCGGCGCGGGGGGGGCGCTGAG CGCTGGCGAGGCGCACCGCCGCTGGGCGCGGCTGCGCGCGCTGACGGCGC CGGCGTCGCAGCGCCTGTGCGAGCAGCTGCGCCTGGTGCTCGCGCCGCAG GTGCGTCTCCCCTGAAGGGAGCGCTGAGTGCACAGCTGAAGCGTATGAAA GGGCAGGCGGCAGATTGCACCAGAAGTTGAAGTTTTCGGTGGTGTCAATA GCTGTCCCCGCAAGTCAGCAAGGAGAGCTCTGCGAGCTCGTGCACATGTT AGACCGCCTGCACACACCATCATGGCATGACTTCTGAATTACAAAGGTCC GAATCCACGTCACTCACTCTCGTGCGCTGCTTCGCGCGTGGTCGCTGCTG CAGGTGGCGACCAAGCTGCGCGGCGACTACCGCGCCGGCAAGCGCATCAA CATGCGCCGCGTCATCGGCTACATTGCCAGCGGCTTCCGGCGCGACAAGA TCTGGCTGCGCCGCACCAAGCCCGCCAAGCGCGCTTATCAGGTGCGTCGC GCTGCGCGGCCGCACGGTGCGGTGGTGCTGTGGTGAAGGCACCAACGTGA AGGCACCGGCGCAGTTGTGCCCTCTAGACATGCGCGAGCTGGCATATGTG CTCTTCGCAGCGCGCTGCCAAAGAGCGCTGAACAAGGCTGGCGCCGCTCT CATTCGACTCTATTTGCTAACTCGAGTCATTGCCGGACCGCCATTCCCAG TCCTGATGCTGAATTGTGACGAGCGCCCTTGCGCCCGGCGGAGGCCGCCA CATTGCTACAGATGGCGTGCGTGAGGCTGACATGCGCTGCTGTGCGCGCC AAGAAGGATGCCTTGCCGCAGCACTTCGAACTCCACTACAGAAGTCATGC GACAACGCACCGCAGCATCTGATGCAGCCTCGTGGCTTGCTGCTGAGGTG ACCAGCAGCGGGTCATGCGCAGCTCATGACATGATCGACTTTATGACTGG TGCACCCCACTGCCGGCGGCAGAAAGTCTGGTGATCGACCATTCCAGGCG CACGAAGCGCATCATCTGAATCTGTCGCACACAAGCACGCAACCTTGCAC ATGGATTCGCTCAACGTTCAATGCGCACCACAGCACCAGCATTCAACTCA TTGGACAACTCACGAAACCTCCCCCCCCCCCCCCACACACACACCCCCAG GTGCTGGTGGCGATCGACGACTCGGAGTCCATGAAGGACCGCGGCGCCGG CAACGTGGCCATGGCGGCGCTCGCCCTCGTTGCGTCCGGCCTGACGCAGC TGGAGGTCGGGCAGATGGCCGTCGCGCGCTTCGGCGAGCGCATGCAGCTG CTCCACGGCTTCGACGACGCCTTCACGGAGGACAGCGGCGCGCACGTGCT CGCGTCGTTCGGCTTCGACCAGGCGCTCACGCGCACGGGCGTGCTGCTGG AGCAGGCGCAGAGGTTCATGGAGGCGGCGGCGGACGACGCGGCGGCGCGC GGCGGCGGCGGCGGCGGCGGCGACGCGCCGCGACAGCTCGTCTTTGTCAT CTCGGACGGGCACTGCGAGCGGGAGTCGCGCCGCGAGGTGGCGCGCCGCA TCCGCGACATGAGCGACCGCGGCCAGCTCGTGGCGCTGATCATCATCGAC AGGGGCGGCGACGACAGCATCGTCAACATGAACTCGGTCGCGTTCGCGCG CGGCGGCGTCGTTACGCGCCGCTACCTCGACGGCTACCCGTTCCCGTACT ACATCGTGCTGCGCGACCTGCAGGCGCTGCCGGACATCCTCGCCGACGCG CTGCGCCAGTGGTTCGAGCTCGTGCAGCGGCAGCAGGAGGCATAG
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Coding sequence (CDS) from alignment at Contig_17:437686..439530+

>mRNA_3367 ID=mRNA_3367|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_17:437686..439530+ (Tribonema minus UTEX_B_3156 )
ATGCGGCTCGCGCAGGCGTGGGCGCGGGGCGGCGCGGGGGGGGCGCTGAG
CGCTGGCGAGGCGCACCGCCGCTGGGCGCGGCTGCGCGCGCTGACGGCGC
CGGCGTCGCAGCGCCTGTGCGAGCAGCTGCGCCTGGTGCTCGCGCCGCAG
GTGGCGACCAAGCTGCGCGGCGACTACCGCGCCGGCAAGCGCATCAACAT
GCGCCGCGTCATCGGCTACATTGCCAGCGGCTTCCGGCGCGACAAGATCT
GGCTGCGCCGCACCAAGCCCGCCAAGCGCGCTTATCAGGTGCTGGTGGCG
ATCGACGACTCGGAGTCCATGAAGGACCGCGGCGCCGGCAACGTGGCCAT
GGCGGCGCTCGCCCTCGTTGCGTCCGGCCTGACGCAGCTGGAGGTCGGGC
AGATGGCCGTCGCGCGCTTCGGCGAGCGCATGCAGCTGCTCCACGGCTTC
GACGACGCCTTCACGGAGGACAGCGGCGCGCACGTGCTCGCGTCGTTCGG
CTTCGACCAGGCGCTCACGCGCACGGGCGTGCTGCTGGAGCAGGCGCAGA
GGTTCATGGAGGCGGCGGCGGACGACGCGGCGGCGCGCGGCGGCGGCGGC
GGCGGCGGCGACGCGCCGCGACAGCTCGTCTTTGTCATCTCGGACGGGCA
CTGCGAGCGGGAGTCGCGCCGCGAGGTGGCGCGCCGCATCCGCGACATGA
GCGACCGCGGCCAGCTCGTGGCGCTGATCATCATCGACAGGGGCGGCGAC
GACAGCATCGTCAACATGAACTCGGTCGCGTTCGCGCGCGGCGGCGTCGT
TACGCGCCGCTACCTCGACGGCTACCCGTTCCCGTACTACATCGTGCTGC
GCGACCTGCAGGCGCTGCCGGACATCCTCGCCGACGCGCTGCGCCAGTGG
TTCGAGCTCGTGCAGCGGCAGCAGGAGGCATAG
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