mRNA_3367 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A836CJU6_9STRA (Midasin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU6_9STRA) HSP 1 Score: 557 bits (1436), Expect = 1.340e-199 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1 Query: 1 MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQEA 930 MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQEA Sbjct: 1 MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQEA 310
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI) HSP 1 Score: 320 bits (820), Expect = 8.220e-96 Identity = 165/283 (58.30%), Postives = 207/283 (73.14%), Query Frame = 1 Query: 73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921 W RLR++T SQRLCEQLRLVL P VATKL+GDYR+GKRINMRRVI YIASGFR+DKIWLRRTKPAKR YQ+L+AIDDSESM D GAG +A+AA+ +VASGLTQLE GQ+AVARFGE + LLHGF D FTE++GA ++ F FDQ T T LE +E A PRQLV ++SDG +RE++ + + +R+M++RGQL+ LI++D+ GD SI+ + G +V YLD YPFP Y++L ++ALP+ LADALRQWFEL+QRQ Sbjct: 5247 WGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQILMAIDDSESMADCGAGALALAAMTMVASGLTQLEAGQLAVARFGEDLDLLHGFGDPFTEEAGAKIVDGFTFDQKRTNTAHTLEGLVSLLEEARSGFSMSSGGVGSKGTPRQLVLLLSDGRFDRENKDRLRKLVREMNERGQLLVLIVLDKEGDTSILKTREATYVNGKLVLTSYLDKYPFPLYMLLNHIEALPETLADALRQWFELLQRQ 5529
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE) HSP 1 Score: 320 bits (819), Expect = 1.110e-95 Identity = 166/283 (58.66%), Postives = 206/283 (72.79%), Query Frame = 1 Query: 73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921 W RLR++T SQRLCEQLRLVL P VATKL+GDYR+GKRINMRRVI YIASGFR+DKIWLRRTKPAKR YQ+L+AIDDSESM D GAG +A+AA+ VASGLTQLE GQ+AVARFGE + LLHGF D FTE++GA ++ F FDQ T T LE +E A PRQLV ++SDG +RE++ + + +R+M++RGQL+ LI++D+ GD SI+ + G +V YLD YPFP YI+L ++ALP+ LADALRQWFEL+QRQ Sbjct: 4479 WGRLRSVTGALSQRLCEQLRLVLEPMVATKLQGDYRSGKRINMRRVIPYIASGFRKDKIWLRRTKPAKRDYQILMAIDDSESMADCGAGALALAAMTTVASGLTQLEAGQLAVARFGEDLDLLHGFGDPFTEEAGAKLVDGFTFDQKCTNTAHTLEGLVSLLEEARNGFSMSSGGVGSKGTPRQLVLLLSDGRFDRENKDRLRKLVREMNERGQLLVLIVLDKEGDTSILKTREATYVNGKLVLSSYLDKYPFPLYILLNHIEALPETLADALRQWFELLQRQ 4761
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: W7TQS4_9STRA (Midasin-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQS4_9STRA) HSP 1 Score: 299 bits (765), Expect = 7.540e-95 Identity = 163/287 (56.79%), Postives = 207/287 (72.13%), Query Frame = 1 Query: 73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPR---QLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAF-ARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921 WAR R+ +AP + RLCEQLRLVL PQVA+KL GDYR+GKRINMRRVI YIASG+R+DKIWLRRTKPAKRAYQVL+AIDDS SMK GA ++A+ ALA +ASG++ LE+G++ VA FGE + LLHGF + +TED+GA VL+SF F+Q T +LLE +E A AP QLVFV+SDG ER + + R +R M ++GQL+ L+I+DR SI V + A GGV +YLD YPFPYY+VLRD+QALP+++ADAL+QWFEL+ R+ Sbjct: 234 WARYRSASAPLALRLCEQLRLVLEPQVASKLGGDYRSGKRINMRRVIPYIASGYRKDKIWLRRTKPAKRAYQVLLAIDDSGSMKHFGAEDMALTALATLASGMSALEIGEVGVAAFGETLSLLHGFGEPWTEDAGARVLSSFTFEQEATDGALLLESVSAALEMAARGARQASAASQGPGAPAKIFQLVFVVSDGSFERGDKATLRRLVRQMGEKGQLLVLLIVDR----SIEERQEVEYSATGGVRLSKYLDSYPFPYYVVLRDVQALPEVMADALKQWFELLGRE 516
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A4D9D334_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D334_9STRA) HSP 1 Score: 297 bits (761), Expect = 6.760e-88 Identity = 162/287 (56.45%), Postives = 206/287 (71.78%), Query Frame = 1 Query: 73 WARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPR---QLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGGDDSIVNMNSVAF-ARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQ 921 WAR R+ +AP + RLCEQLRLVL PQVA+KL GDYR+GKRINMRRVI YIASG+R+DKIWLRRTKPAKRAYQVL+AIDDS SMK GA ++A+ ALA +ASG++ LE+G++ VA FGE + LLHGF + +TED+GA VL+SF F+Q T +LLE +E A P QLVFV+SDG ER + + R +R M ++GQL+ L+I+DR SI V + A GGV +YLD YPFPYY+VLRD+QALP+++ADAL+QWFEL+ R+ Sbjct: 6112 WARYRSASAPLALRLCEQLRLVLEPQVASKLGGDYRSGKRINMRRVIPYIASGYRKDKIWLRRTKPAKRAYQVLLAIDDSGSMKHFGAEDMALTALATLASGMSALEIGEVGVAAFGETLSLLHGFGEPWTEDAGARVLSSFTFEQEATDGALLLESVSAALEMAARGARQASDASQGQGVPAKIFQLVFVVSDGSFERGDKATLRRLVRQMGEKGQLLVLLIVDR----SIEERQEVEYSATGGVRLSKYLDSYPFPYYVVLRDVQALPEVMADALKQWFELLGRE 6394
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7R9YWN0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YWN0_9STRA) HSP 1 Score: 284 bits (727), Expect = 1.070e-87 Identity = 145/290 (50.00%), Postives = 209/290 (72.07%), Query Frame = 1 Query: 58 EAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGG-----DDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELV 912 +A RW+ ++A T S+RLCE+LRLV+ P VATKL+GDYR GKRINM+RVIGYIASG+R+DKIWLRRTKPAKR Y+VL+A+DDSESMK GAG++A+AALA +A+G++QLE+G++ VA FGE M L+H F FT +SGA+++++F F+Q TRT + +E A +E++ + LVF+ISDG ER+SR + + +R+M++R L+ +II++ DSI++M V F +G + +++ YPFPYY+VL D+ +LP++L DALRQWFE++ Sbjct: 361 QAQLRWSEIQAETNNLSRRLCEKLRLVMEPLVATKLQGDYRTGKRINMKRVIGYIASGYRKDKIWLRRTKPAKRDYRVLLAVDDSESMKKSGAGDMALAALATLANGMSQLEIGELGVASFGEEMSLVHSFQVPFTSESGANLVSNFSFNQKRTRTALCVESAMSVLESSTGT-----------SSSLHLVFIISDGRIERDSRSSLRKLVREMAERNVLLVMIIVEGNKRKEKKKDSIIHMKEVTFHKGKPKMKHFIEDYPFPYYMVLEDMASLPEVLGDALRQWFEML 639
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7S2SE58_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SE58_9STRA) HSP 1 Score: 286 bits (731), Expect = 1.510e-86 Identity = 150/295 (50.85%), Postives = 215/295 (72.88%), Query Frame = 1 Query: 58 EAHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIID-RGGD-----DSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQ 924 EA RW+++++ T S+RLCE+LRLV+ P VATKLRGDYR GKRINM+RVIGYIASG+++DKIWLRRTKPAKR Y+VL+A+D+SESMK GAG++A++ALA +A+G++QLEVG++ +A FGE M+LLH F+ FT +SGA+V+ +F FD TRT + +E A +E+ + QLVF+ISDG ER+SR+ + + +R+MS+R LV ++I++ + G+ DSI+ M V F +G + ++D YPFPYY+VL D+ +LP++L DALRQWFE++ + Q Sbjct: 557 EARHRWSKIQSETNVLSRRLCEKLRLVMEPLVATKLRGDYRTGKRINMKRVIGYIASGYQKDKIWLRRTKPAKRNYRVLLAVDNSESMKKSGAGDMALSALATLANGMSQLEVGELGIASFGEDMKLLHPFNLPFTSESGANVVCNFKFDDQRTRTALCVESAIVALESQAES-----------SSSLQLVFIISDGRIERDSRQNLRKLVREMSERNILVVMMIVEGKQGEGSQKKDSIIQMKEVTFEKGKPKMKHFIDDYPFPYYMVLEDMNSLPEVLGDALRQWFEMLSQIQ 840
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7S0CIB3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIB3_9STRA) HSP 1 Score: 283 bits (724), Expect = 2.380e-85 Identity = 148/292 (50.68%), Postives = 210/292 (71.92%), Query Frame = 1 Query: 61 AHRRWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIIDRGG---DDSIVNMNSVAF-ARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELVQRQQ 924 A +WA L T S+RLCE+LRLVL P VA+KL+GDYR+GKRINM+RVIGYIASG+R+DKIWLRRTKPAKR Y+VL+A+DDSESMK G+G +A+AALA +A+G++QLE+G++ +A FGE M+LLH F+ FT DSG ++++ F FD+ TRT + +E A +E A + QLVF+ISDG ER++R ++ R +R+MS+R L+ I+++ +DSI++M V+F A+G ++D YPFPYY++L D+ +LP++L DALRQWFE++ + Q Sbjct: 580 ARAKWAELNVETTNLSRRLCEKLRLVLEPLVASKLQGDYRSGKRINMKRVIGYIASGYRKDKIWLRRTKPAKRDYRVLLAVDDSESMKKSGSGEMALAALATIANGMSQLEIGELGIASFGEEMRLLHPFNLPFTLDSGTNLMSHFKFDEQRTRTALCVESAIAALENAAGLSSRGI------SSSLQLVFIISDGRIERDNRSKLRRLVREMSERNILLVTIVVEGNNAKKEDSIIHMKEVSFDAKGRPKVTHFIDDYPFPYYLILEDMASLPEVLGDALRQWFEMLSQIQ 865
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A7S4QTU3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QTU3_9STRA) HSP 1 Score: 278 bits (711), Expect = 8.180e-84 Identity = 141/287 (49.13%), Postives = 208/287 (72.47%), Query Frame = 1 Query: 70 RWARLRALTAPASQRLCEQLRLVLAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIID------RGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELV 912 +W++++A T S+RLCE+LRLV+ P VATKL+GDYR GKRINM+RVIGYIASG+R+DKIWLRRTKP+KR Y+VL+A+DDSESM+ GAG++A+AALA++++G+ QLE+G++ VA FGE M+LLH F AFT +SG ++++F FDQ TR + +E A +E D+ +LVF+ISDG ER+SR ++ + +R+M+++ L+ +II++ + DSIVNM V F G + +++ YPFPYY++L ++ +LP++L DALRQWFE++ Sbjct: 538 KWSQIQANTLNLSRRLCEKLRLVMEPLVATKLQGDYRTGKRINMKRVIGYIASGYRKDKIWLRRTKPSKRNYRVLLAVDDSESMQKSGAGDMALAALAVLSNGMNQLEIGELGVASFGEEMKLLHQFHQAFTSESGPALVSNFTFDQKRTRMALCVESAIAALEG-------------DTDSSMKLVFLISDGRIERDSRSKLRKLVREMTEKNILLVVIIVEGDATAKKTNKDSIVNMKEVTFENGKPKVKYFIEDYPFPYYMILEEMSSLPEVLGDALRQWFEML 811
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Match: A0A1E7FXA3_9STRA (VWFA domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXA3_9STRA) HSP 1 Score: 261 bits (668), Expect = 8.860e-84 Identity = 139/260 (53.46%), Postives = 184/260 (70.77%), Query Frame = 1 Query: 139 LAPQVATKLRGDYRAGKRINMRRVIGYIASGFRRDKIWLRRTKPAKRAYQVLVAIDDSESMKDRGAGNVAMAALALVASGLTQLEVGQMAVARFGERMQLLHGFDDAFTEDSGAHVLASFGFDQALTRTGVLLEQAQRFMEAAXXXXXXXXXXXXXXDAPRQLVFVISDGHCERESRREVARRIRDMSDRGQLVALIIID--RGGDDSIVNMNSVAFARGGVVTRRYLDGYPFPYYIVLRDLQALPDILADALRQWFELV 912 + P VA+KLRGDYR GKRINM+RVIGYIASG+R+DKIWLRRTKPAKR Y+VL+A+DDSESMK GAG +A+ A+A VA G+ QLEVG++ VA FGE M+L+H F FT +SG V+ +F FDQ TR + +E A +E + + QLVF+ISDG ER+SR + R IR+M +R L+A+II++ DSI+NM V F +G V +R++D YPFPYYIVL D+ +LP++L DAL+QWFE++ Sbjct: 1 MEPLVASKLRGDYRTGKRINMKRVIGYIASGYRKDKIWLRRTKPAKRNYRVLLAVDDSESMKKSGAGEMALHAMATVAVGMNQLEVGELGVASFGEDMKLVHPFHMPFTSESGVSVVRNFKFDQQRTRIALCVESAMAALEDSGDR------------SSMQLVFLISDGRIERDSRSALKRLIREMMERNILLAMIIVEGKEKKKDSILNMKEVTFEKGKPVVKRFIDDYPFPYYIVLDDVVSLPEVLGDALKQWFEML 248 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161492 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3367 ID=mRNA_3367|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_17:437686..439530+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGGCTCGCGCAGGCGTGGGCGCGGGGCGGCGCGGGGGGGGCGCTGAGback to top protein sequence of jgi.p|Trimin1|161492 >Trimin1|161492|e_gw1.17.93.1 ID=Trimin1|161492|e_gw1.17.93.1|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp MRLAQAWARGGAGGALSAGEAHRRWARLRALTAPASQRLCEQLRLVLAPQback to top mRNA from alignment at Contig_17:437686..439530+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3367 ID=mRNA_3367|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1845bp|location=Sequence derived from alignment at Contig_17:437686..439530+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:437686..439530+ >mRNA_3367 ID=mRNA_3367|Name=jgi.p|Trimin1|161492|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_17:437686..439530+ (Tribonema minus UTEX_B_3156 )back to top |