mRNA_3313 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161532
Unique NamemRNA_3313
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A835Z6G1_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G1_9STRA)

HSP 1 Score: 513 bits (1320), Expect = 1.580e-183
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKVCT 786
            EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKVCT
Sbjct:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKVCT 262          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 5.190e-35
Identity = 79/195 (40.51%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNF-LHTALAHHPPTPVHMPPIAPSAGL--ILESTIMIRRLKEQVLSQM 576
            +A+A+A AY ++WP+LV+ P++L+DNWRNE +KWVP L    + +V+D+   +  S    Q  +V+Y L  R+V    L  GQF +V ADESH LK+  A+R+Q+ +P++++A+RAIC++GTP LSRPAE+ +  +     +  +   F +    A   P  + +   + SA L  ILE+ IM+RRLKE+V   M
Sbjct:  147 QALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKEAIQIVRDAKMGVRDS---AQLVIVSYDLATRMVEKSLLWKGQFEIVIADESHYLKSVDAKRSQAVVPLMQKASRAICVTGTPALSRPAELFMQLKALMPQAFRTFHPFAVRYCAAFQGPFGLDVTGSSNSAELKMILEAAIMVRRLKEEVAELM 338          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A7R9ZF25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF25_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.450e-29
Identity = 80/235 (34.04%), Postives = 122/235 (51.91%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTS-------------NGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGL----ILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDS-RQELSALL 651
            ++IA   AY DE PLLVLCP+++R NW+ E+L+W+ +  ++G    ++    L T              N   +  V +Y L   +V  G +    F  +  DESHMLK   AQRT++ALPIL+ A R I LSGTP    PAE+            W+++        +   T      +     L    ++ ST+MIRR K+ VL ++LP+K R++ HVAV   S R++L++L+
Sbjct:  231 QSIAAMCAYVDEGPLLVLCPSSVRFNWKAEVLQWLGKERNNGTGAPREQHPALLTELNVQVFNSGKDEINKDAKVIVASYDLFTNMVKKGKIVESTFARIIVDESHMLKNTKAQRTKAALPILKAAKRCILLSGTPAFKNPAELFPQLYVLGGGKWWANEKEFREKYCYKSST------VGGRNNLELYSLMASTVMIRRKKDDVLKEVLPKKNRDLAHVAVDDPSDRKKLNSLM 459          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: L1IS15_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IS15_GUITC)

HSP 1 Score: 122 bits (306), Expect = 3.090e-28
Identity = 89/267 (33.33%), Postives = 141/267 (52.81%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVP-RLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTAL----AHHPPTPVHMPPIAPSAGL--ILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKV 780
            +AIAIAAAY DEWPLL++CP+++R  W  EL+ W+P  L    V  +      +    G +   +++Y L  +      + + QF+V+  DESH LK   A+R+++ LP +R A R+I L+GTP LSRP E+  +    +S      +NFL  A     AH  P  +     +    L  +L+   M+RRLK+ VL+Q LP KRR+ I + ++    +  +  + +   +     D     E   RA+S ++AL  ++   TGVAK+
Sbjct:  111 QAIAIAAAYLDEWPLLIVCPSSMRCMWAQELVNWLPGELTPQDVNTIFSGRDVV----GNQLVTIISYDLFCKFAPE--ISSMQFKVIIGDESHYLKNPNAKRSKTILPFIRSARRSILLTGTPALSRPVELFNLL---NSLHPRLFNNFLEFAYRYCDAHQGPFGLETSGASNLEELHVLLDQHTMVRRLKKDVLTQ-LPAKRRQKILIKISEAESKRFATEMDKLKELERVTQDEEEDSEARFRAQSRKKALIMKMYVDTGVAKL 367          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A0L0H6Z5_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H6Z5_SPIPD)

HSP 1 Score: 121 bits (303), Expect = 1.760e-27
Identity = 90/281 (32.03%), Postives = 141/281 (50.18%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVT-YGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIM---------------TRPCDSTSC---WSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKS--DQQALTARLCKLTGVAKV 780
            +AIAI A Y  EWP++V+CP++LR  W+ E+ KW+  L    + V+  S   + + +     FV+T Y L  R      L   ++R+V ADESH LK+  A+RT++ +P+L+ A RA+ LSGTP LSRP E+                   R CD       W      + A  H                  LE T++IRRLK+ VL + LP K R+ ++V +A  S+Q  +AL++Q   I   + D   +     R +   +++ L  ++ + TG+AK+
Sbjct:  233 QAIAICAFYRSEWPVMVICPSSLRLTWQAEICKWLD-LPEERIQVIFASKDRVSSESH----FVITSYDLASREDIKKQLEKAKYRIVVADESHFLKSREAKRTKTIIPLLKGAKRALLLSGTPALSRPIELFTQISALLPSFTTAVQFGVRYCDGKQNRYGWDFTGNSNIAELHW----------------FLEQTVLIRRLKKDVLKE-LPSKTRQCVYVDIAAKSKQTFAALMAQNEEINERLEDAKTASNTKHRQEVTLEKRTLLIQMYRETGIAKL 491          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A1R2CQ71_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CQ71_9CILI)

HSP 1 Score: 120 bits (302), Expect = 2.180e-27
Identity = 80/224 (35.71%), Postives = 117/224 (52.23%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEV----------------CIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARD 624
            +AIA A AY DEWP+LV+CP +++ NWR+E LKWVP L      VVK       T     + ++ +Y +   ++ +  L +    VV ADE H LK   A+RT++ LPIL+ A R + LSGTPV+SRPAE+                    R CD    ++H ++  ++      T             ++ +T+MIRRLK  V+S+ LPEK R+ I + V  D
Sbjct:  222 QAIAAAYAYVDEWPVLVICPASIKLNWRDEFLKWVPGLEKKDFYVVKSKK----TMKNSAKVWIASYNMA--MLLDALLCSKVLNVVIADECHYLKNYNAKRTKNILPILQRARRVLLLSGTPVMSRPAELYTQLSAIRPDVFFNFKVFADRYCDPKVLFTHTDYSGSSNIKELHT-------------LISNTVMIRRLKADVMSE-LPEKVRQKIEIPVVAD 425          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A7S1DJ47_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DJ47_HEMAN)

HSP 1 Score: 111 bits (278), Expect = 8.630e-27
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEV 393
            +A+++AAAYADEWP+LVLCP +LR NW  E+ +W+P +    V V+  S+ +        +  + +Y L+PRL  +     G FRVV ADESH LK+  + R ++  P+LR A RA+ LSGTP L+RP E+
Sbjct:   10 QALSVAAAYADEWPMLVLCPASLRLNWAAEVQRWLPGVARGDVRVLF-SARDAPPGGDPPRVTIASYDLMPRLAPS---MKGMFRVVLADESHYLKSHSSLRAKACAPLLRAARRAVLLSGTPALARPCEL 136          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A0F7UMM8_NEOCL (SNF2 family N-terminal domain-containing protein,putative n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=A0A0F7UMM8_NEOCL)

HSP 1 Score: 119 bits (298), Expect = 9.270e-27
Identity = 95/283 (33.57%), Postives = 140/283 (49.47%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCS-SGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEV-----------CIMTRPCD--STSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIV---------SAMSDPNLSREQL-ARAKSDQQALTARLCKLTGVAK 777
            +A+AIAA Y +EWP LV+CP+++R  WR++ L+W+  L     + +VK   +E+    GR +  +++Y L+ +           ++VV  DESH LK   A+RTQ+  P+LR A RAI LSGTP L+RP E+           C      D  S   W+          H  P  +H         L+L+ TIMIRRLKEQV S+ LP K R  + + +     +E+   +++  A           SAMS P+ + E    R  +    L   L  LTG+AK
Sbjct:  632 QALAIAAFYHNEWPFLVICPSSIRFQWRDQALRWLSELLVLDEICLVKSGRAEI---PGRTKMVIISYDLITKQKK----FMAPYQVVICDESHYLKNYQAKRTQAICPLLRSAKRAILLSGTPALNRPVELFQQFDALLPDLCTYREFADRYSVQVWNPFTRHFEYEGHQHPEELH---------LLLKHTIMIRRLKEQVHSE-LPRKIRSRVPIEIPAKELKEIREKMAELEAEGRPEAFLGGDSAMSGPDPNPENTDQRVSASSSPLVVELFTLTGLAK 897          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A7S1U711_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U711_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.990e-27
Identity = 92/291 (31.62%), Postives = 139/291 (47.77%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPR--LCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVC-------------------IMTRPCDS---TSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAI-------VSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKV 780
            + +A AA Y  +WPLLVL P  +R NW+ EL+K++P   L    V VV   +  +  S       ++++ ++ +L +   L    F  + ADESH LK+  A+RTQ+ALP++R A R + L+GTP LSRPAE+                     MTR CD+   T  W      + A                    +L  TIM+RRLK QVL++ +P K R +  V    + R+E+     Q + I         + +  N + E+L + KS++  L  RL  L G AK+
Sbjct:  198 QGVAFAAHYRADWPLLVLTPAGVRANWKKELMKFLPECVLADDEVRVVTKLADPIDDS----PVVILSWSMIEKLTSQKRLKPKMFGAIIADESHFLKSLDAKRTQAALPLMRAARRLLLLTGTPALSRPAELWPQLHAIAADTLFPRAAMNEFMTRYCDAHQGTFGWDTRGASNEA----------------ELAALLRDTIMVRRLKAQVLAENMPGKMRIMTCVEAPDEVRKEIDDGREQLNDIEMQIRNGARSTAGGNSADERLHKLKSERDTLMMRLWTLAGRAKI 468          
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: L1JAD3_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAD3_GUITC)

HSP 1 Score: 116 bits (290), Expect = 3.380e-26
Identity = 78/225 (34.67%), Postives = 125/225 (55.56%), Query Frame = 1
Query:    1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSG--VTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSA----GLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQ 657
            +A+A+AAAY  EWPLL++CP++LR NW  E  +W+  +      V VV   S  +   +      +V+Y L  R+  +  + A  F+VV ADESH +KT  A RT++ +P+LR+A+RAI LSGTP LSRP E+ +    C     +S          +       +     S      ++L S++MIRRLK +VL + LP KRR+ + + VA    +++ +++++
Sbjct:   48 QALAVAAAYKREWPLLIICPSSLRLNWAQECSRWLEGMKEEPLEVQVVMKGSDAIKGVD----VTIVSYDLATRM--SDAIKASSFKVVIADESHYIKTDKALRTRACMPLLRQASRAILLSGTPALSRPVEL-LSQLQCLQPKIFSSKREFQRRYCNAKQGRWGLDTSGASCLQELSILLSSSVMIRRLKREVLVE-LPAKRRQKVFINVANKDLKKIQSIMNR 264          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6G1_9STRA1.580e-183100.00SNF2 family N-terminal domain-containing protein n... [more]
D8LK86_ECTSI5.190e-3540.51Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
A0A7R9ZF25_9STRA3.450e-2934.04Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
L1IS15_GUITC3.090e-2833.33Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A0L0H6Z5_SPIPD1.760e-2732.03Uncharacterized protein n=2 Tax=Spizellomyces punc... [more]
A0A1R2CQ71_9CILI2.180e-2735.71Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A7S1DJ47_HEMAN8.630e-2744.27Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0F7UMM8_NEOCL9.270e-2733.57SNF2 family N-terminal domain-containing protein,p... [more]
A0A7S1U711_9STRA9.990e-2731.62Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
L1JAD3_GUITC3.380e-2634.67Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_17contigContig_17:40452..42671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161532|e_gw1.17.135.1
BRITEko00000,ko01000,ko03036
KEGG koko:K14440
EC3.6.4.12
Descriptionannealing helicase activity
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0553@1|root,KOG1000@2759|Eukaryota
Evalue8.51e-36
Seed ortholog2880.D8LK86
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSNF2-related HARP domain and Zn finger helicase protein
Ec32 orthologEc-16_002430.1
TranscriptId161854
TrackFilteredModels1
ProteinId161532
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161532gene_3313Tribonema minus UTEX_B_3156 geneContig_17 40452..42671 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3313_1exon_3313_1Tribonema minus UTEX_B_3156 exonContig_17 40452..40849 +
exon_3313_2exon_3313_2Tribonema minus UTEX_B_3156 exonContig_17 42281..42671 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3313CDS_3313Tribonema minus UTEX_B_3156 CDSContig_17 40452..40849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161532Trimin1|161532|e_gw1.17.135.1Tribonema minus UTEX_B_3156 polypeptideContig_17 40452..42671 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3313 ID=mRNA_3313|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_17:40452..42671+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGGCAATCGCCATCGCTGCCGCCTATGCGGACGAGTGGCCCCTTCTAGT
CCTCTGCCCCACCGCACTGCGCGACAACTGGCGCAACGAGCTCCTCAAGT
GGGTGCCACGCCTCTGCAGCTCGGGCGTAACTGTCGTCAAAGACAGTTCC
TCAGAATTGTGCACGAGCAACGGACGCCGCCAGGCCTTTGTGGTCACGTA
TGGACTGCTGCCGCGGCTGGTGGCCAATGGGCACCTGCACGCCGGGCAGT
TCCGCGTGGTGTGTGCGGATGAGAGTCACATGTTGAAGACGGCGGGGGCG
CAGCGCACGCAGAGCGCGCTGCCCATTCTGCGCGAGGCGACGCGCGCCAT
CTGCCTCAGCGGCACGCCCGTTCTGAGCCGGCCAGCGGAGGTGTGTATCA
TGACTCGTCCTTGTGACTCAACATCCTGCTGGTCACATGACAACTTCCTA
CATACTGCTCTGGCCCACCACCCACCAACTCCTGTTCACATGCCGCCTAT
TGCGCCATCTGCAGGTCTCATCTTGGAGAGCACCATCATGATCCGCCGAC
TCAAGGAGCAGGTCCTCAGCCAGATGCTGCCCGAGAAGCGCAGAGAGATC
ATCCACGTGGCCGTGGCGCGCGACTCGAGACAGGAGCTGTCGGCCCTGCT
GTCACAGCGCTCGGCCATAGTGAGCGCCATGTCGGACCCCAACCTGTCGC
GCGAGCAGCTGGCGCGCGCCAAGAGCGACCAGCAGGCGCTCACCGCGCGC
CTGTGCAAGCTCACCGGCGTGGCCAAGGTGTGTACGTGA
back to top

protein sequence of jgi.p|Trimin1|161532

>Trimin1|161532|e_gw1.17.135.1 ID=Trimin1|161532|e_gw1.17.135.1|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp
EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSS
SELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGA
QRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFL
HTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREI
IHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTAR
LCKLTGVAKVCT*
back to top

mRNA from alignment at Contig_17:40452..42671+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3313 ID=mRNA_3313|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2220bp|location=Sequence derived from alignment at Contig_17:40452..42671+ (Tribonema minus UTEX_B_3156 )
GAGGCAATCGCCATCGCTGCCGCCTATGCGGACGAGTGGCCCCTTCTAGT CCTCTGCCCCACCGCACTGCGCGACAACTGGCGCAACGAGCTCCTCAAGT GGGTGCCACGCCTCTGCAGCTCGGGCGTAACTGTCGTCAAAGACAGTTCC TCAGAATTGTGCACGAGCAACGGACGCCGCCAGGCCTTTGTGGTCACGTA TGGACTGCTGCCGCGGCTGGTGGCCAATGGGCACCTGCACGCCGGGCAGT TCCGCGTGGTGTGTGCGGATGAGAGTCACATGTTGAAGACGGCGGGGGCG CAGCGCACGCAGAGCGCGCTGCCCATTCTGCGCGAGGCGACGCGCGCCAT CTGCCTCAGCGGCACGCCCGTTCTGAGCCGGCCAGCGGAGGTGTGTATGT ATGTGCATAATGTTCATTGAATGGATGTGGTTGCAGTTGCATGTTGAAGT TGTGTGCCGCTGTCACGTACAGCGCGAAGTTTTTGGCTGCACATTGCATA GTACATTGCCATCATCCTGGTTCTGATGGTGACATGTTGCTGTGACAAAG GCAAGCTATGGGGTAGCCTGTTGCGGCCGCAGACCTGCTGCAGCGCTGCA GTGCCTGAGTTGTGGTATCAAGAGACTGCGGAGCAGGCTCATCGTTCTCC GCTTTGCTTGATCGTCCTGCATGCGTGGTGTTGTTATCATGGGTCATTAT GGCAATCGACAGTGTGTGCTGCATGCTGGCATACAGGCTCATGTCACAAA CGTGGTGTCATAGTCCTGGTGCCAACGCCTCATGAACCACTGTAATTATT GACGCTGCAGCAAGCATCAAAATCACTATACTTTCAGAAGAATGGTGTTT GATGATTGCGGAATGATTGCCATAGCGCTGCAACTCAAGCAGCATCTCAC CTGCTGCAATGAGCCTCGAGGAACTGTATCACACTGACTGTGTAGCTCAG GGACCTGATGGCTAACAAATTGCGCAATGGTTTGCCTTGCGTGGTGGTGG CGCAGGTGTACACGACTCTGTCAGCACTCATGCCGGAGGTCTTCTCCGAT GACGACTTCATGGCATTTGCTGAGCGCTACTGCGGCGCCAAGCAAGGGCC GCTGGGCCTGGACGTCAGCGGCTGCACCAACTCGAGAGAGCTGCGTAAGT TATTGCCGAGGGCTGCGCTTATGTGTCGTATTGACTGCCATGCATGGCTC ACGTGATTAAAGCCCTAACCCTAGCCCTGACCCTAGGAGCACACTCAATA TTGCTTGATTTATTTTCATTGAATGCGATGCATGCAGGTACAATGAACCT GTCGCGGTCAACGCATACCGTTTGGACAAGGGGAGCATGACATCACCGCA AGAGTAGAAAACAATGCGGCAGCTGCAGAATTGTGCCAGCTGTATGCGTG TCCTCTGCTTGTTGCGTCACAACATGCTGCATTGTGCACTTCATCTATTA AGTGAGGCTGTGGGAGGTGGAGGTTGCAGTTGGCATTACCAGAGCATCAT TCTATGAGAGCGCACGTCATGACACCAAGGGCAGTGATGGGATGGGCCCA TTGTGTTCACCACTTGTGGATGCTGCACAGCAGTGACAATACTCGTATGG GTTGGTTTAGAAGGTTGGGCTCGCGCAATGTTGCACCTGTCCTGAGCGCT GCCATACTGCAATTATACGTCAATTCATGGTTCAGGTCACCAACAAAACC TGCCGCAGCACCCAGCCTGGAAACCTGCAGCGTGACGCATTCTGTGGTTT CACACTCCTCATTGACCCCCACACTATCCCCTAATGTCCTGCTGATGGAG CACACATGCAAGCTCAAGCGACTCAGGAGCATGACTCGTCCTTGTGACTC AACATCCTGCTGGTCACATGACAACTTCCTACATACTGCTCTGGCCCACC ACCCACCAACTCCTGTTCACATGCCGCCTATTGCGCCATCTGCAGGTCTC ATCTTGGAGAGCACCATCATGATCCGCCGACTCAAGGAGCAGGTCCTCAG CCAGATGCTGCCCGAGAAGCGCAGAGAGATCATCCACGTGGCCGTGGCGC GCGACTCGAGACAGGAGCTGTCGGCCCTGCTGTCACAGCGCTCGGCCATA GTGAGCGCCATGTCGGACCCCAACCTGTCGCGCGAGCAGCTGGCGCGCGC CAAGAGCGACCAGCAGGCGCTCACCGCGCGCCTGTGCAAGCTCACCGGCG TGGCCAAGGTGTGTACGTGA
back to top

Coding sequence (CDS) from alignment at Contig_17:40452..42671+

>mRNA_3313 ID=mRNA_3313|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_17:40452..42671+ (Tribonema minus UTEX_B_3156 )
GAGGCAATCGCCATCGCTGCCGCCTATGCGGACGAGTGGCCCCTTCTAGT
CCTCTGCCCCACCGCACTGCGCGACAACTGGCGCAACGAGCTCCTCAAGT
GGGTGCCACGCCTCTGCAGCTCGGGCGTAACTGTCGTCAAAGACAGTTCC
TCAGAATTGTGCACGAGCAACGGACGCCGCCAGGCCTTTGTGGTCACGTA
TGGACTGCTGCCGCGGCTGGTGGCCAATGGGCACCTGCACGCCGGGCAGT
TCCGCGTGGTGTGTGCGGATGAGAGTCACATGTTGAAGACGGCGGGGGCG
CAGCGCACGCAGAGCGCGCTGCCCATTCTGCGCGAGGCGACGCGCGCCAT
CTGCCTCAGCGGCACGCCCGTTCTGAGCCGGCCAGCGGAGGTGTGTATCA
TGACTCGTCCTTGTGACTCAACATCCTGCTGGTCACATGACAACTTCCTA
CATACTGCTCTGGCCCACCACCCACCAACTCCTGTTCACATGCCGCCTAT
TGCGCCATCTGCAGGTCTCATCTTGGAGAGCACCATCATGATCCGCCGAC
TCAAGGAGCAGGTCCTCAGCCAGATGCTGCCCGAGAAGCGCAGAGAGATC
ATCCACGTGGCCGTGGCGCGCGACTCGAGACAGGAGCTGTCGGCCCTGCT
GTCACAGCGCTCGGCCATAGTGAGCGCCATGTCGGACCCCAACCTGTCGC
GCGAGCAGCTGGCGCGCGCCAAGAGCGACCAGCAGGCGCTCACCGCGCGC
CTGTGCAAGCTCACCGGCGTGGCCAAGGTGTGTACGTGA
back to top