mRNA_3313 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A835Z6G1_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G1_9STRA) HSP 1 Score: 513 bits (1320), Expect = 1.580e-183 Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKVCT 786 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKVCT Sbjct: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKVCT 262
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI) HSP 1 Score: 143 bits (360), Expect = 5.190e-35 Identity = 79/195 (40.51%), Postives = 123/195 (63.08%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNF-LHTALAHHPPTPVHMPPIAPSAGL--ILESTIMIRRLKEQVLSQM 576 +A+A+A AY ++WP+LV+ P++L+DNWRNE +KWVP L + +V+D+ + S Q +V+Y L R+V L GQF +V ADESH LK+ A+R+Q+ +P++++A+RAIC++GTP LSRPAE+ + + + + F + A P + + + SA L ILE+ IM+RRLKE+V M Sbjct: 147 QALAVACAYREDWPVLVVAPSSLKDNWRNEAMKWVPGLTKEAIQIVRDAKMGVRDS---AQLVIVSYDLATRMVEKSLLWKGQFEIVIADESHYLKSVDAKRSQAVVPLMQKASRAICVTGTPALSRPAELFMQLKALMPQAFRTFHPFAVRYCAAFQGPFGLDVTGSSNSAELKMILEAAIMVRRLKEEVAELM 338
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A7R9ZF25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF25_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.450e-29 Identity = 80/235 (34.04%), Postives = 122/235 (51.91%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTS-------------NGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGL----ILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDS-RQELSALL 651 ++IA AY DE PLLVLCP+++R NW+ E+L+W+ + ++G ++ L T N + V +Y L +V G + F + DESHMLK AQRT++ALPIL+ A R I LSGTP PAE+ W+++ + T + L ++ ST+MIRR K+ VL ++LP+K R++ HVAV S R++L++L+ Sbjct: 231 QSIAAMCAYVDEGPLLVLCPSSVRFNWKAEVLQWLGKERNNGTGAPREQHPALLTELNVQVFNSGKDEINKDAKVIVASYDLFTNMVKKGKIVESTFARIIVDESHMLKNTKAQRTKAALPILKAAKRCILLSGTPAFKNPAELFPQLYVLGGGKWWANEKEFREKYCYKSST------VGGRNNLELYSLMASTVMIRRKKDDVLKEVLPKKNRDLAHVAVDDPSDRKKLNSLM 459
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: L1IS15_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IS15_GUITC) HSP 1 Score: 122 bits (306), Expect = 3.090e-28 Identity = 89/267 (33.33%), Postives = 141/267 (52.81%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVP-RLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTAL----AHHPPTPVHMPPIAPSAGL--ILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKV 780 +AIAIAAAY DEWPLL++CP+++R W EL+ W+P L V + + G + +++Y L + + + QF+V+ DESH LK A+R+++ LP +R A R+I L+GTP LSRP E+ + +S +NFL A AH P + + L +L+ M+RRLK+ VL+Q LP KRR+ I + ++ + + + + + D E RA+S ++AL ++ TGVAK+ Sbjct: 111 QAIAIAAAYLDEWPLLIVCPSSMRCMWAQELVNWLPGELTPQDVNTIFSGRDVV----GNQLVTIISYDLFCKFAPE--ISSMQFKVIIGDESHYLKNPNAKRSKTILPFIRSARRSILLTGTPALSRPVELFNLL---NSLHPRLFNNFLEFAYRYCDAHQGPFGLETSGASNLEELHVLLDQHTMVRRLKKDVLTQ-LPAKRRQKILIKISEAESKRFATEMDKLKELERVTQDEEEDSEARFRAQSRKKALIMKMYVDTGVAKL 367
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A0L0H6Z5_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H6Z5_SPIPD) HSP 1 Score: 121 bits (303), Expect = 1.760e-27 Identity = 90/281 (32.03%), Postives = 141/281 (50.18%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVT-YGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIM---------------TRPCDSTSC---WSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIVSAMSDPNLSREQLARAKS--DQQALTARLCKLTGVAKV 780 +AIAI A Y EWP++V+CP++LR W+ E+ KW+ L + V+ S + + + FV+T Y L R L ++R+V ADESH LK+ A+RT++ +P+L+ A RA+ LSGTP LSRP E+ R CD W + A H LE T++IRRLK+ VL + LP K R+ ++V +A S+Q +AL++Q I + D + R + +++ L ++ + TG+AK+ Sbjct: 233 QAIAICAFYRSEWPVMVICPSSLRLTWQAEICKWLD-LPEERIQVIFASKDRVSSESH----FVITSYDLASREDIKKQLEKAKYRIVVADESHFLKSREAKRTKTIIPLLKGAKRALLLSGTPALSRPIELFTQISALLPSFTTAVQFGVRYCDGKQNRYGWDFTGNSNIAELHW----------------FLEQTVLIRRLKKDVLKE-LPSKTRQCVYVDIAAKSKQTFAALMAQNEEINERLEDAKTASNTKHRQEVTLEKRTLLIQMYRETGIAKL 491
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A1R2CQ71_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CQ71_9CILI) HSP 1 Score: 120 bits (302), Expect = 2.180e-27 Identity = 80/224 (35.71%), Postives = 117/224 (52.23%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEV----------------CIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARD 624 +AIA A AY DEWP+LV+CP +++ NWR+E LKWVP L VVK T + ++ +Y + ++ + L + VV ADE H LK A+RT++ LPIL+ A R + LSGTPV+SRPAE+ R CD ++H ++ ++ T ++ +T+MIRRLK V+S+ LPEK R+ I + V D Sbjct: 222 QAIAAAYAYVDEWPVLVICPASIKLNWRDEFLKWVPGLEKKDFYVVKSKK----TMKNSAKVWIASYNMA--MLLDALLCSKVLNVVIADECHYLKNYNAKRTKNILPILQRARRVLLLSGTPVMSRPAELYTQLSAIRPDVFFNFKVFADRYCDPKVLFTHTDYSGSSNIKELHT-------------LISNTVMIRRLKADVMSE-LPEKVRQKIEIPVVAD 425
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A7S1DJ47_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DJ47_HEMAN) HSP 1 Score: 111 bits (278), Expect = 8.630e-27 Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEV 393 +A+++AAAYADEWP+LVLCP +LR NW E+ +W+P + V V+ S+ + + + +Y L+PRL + G FRVV ADESH LK+ + R ++ P+LR A RA+ LSGTP L+RP E+ Sbjct: 10 QALSVAAAYADEWPMLVLCPASLRLNWAAEVQRWLPGVARGDVRVLF-SARDAPPGGDPPRVTIASYDLMPRLAPS---MKGMFRVVLADESHYLKSHSSLRAKACAPLLRAARRAVLLSGTPALARPCEL 136
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A0F7UMM8_NEOCL (SNF2 family N-terminal domain-containing protein,putative n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=A0A0F7UMM8_NEOCL) HSP 1 Score: 119 bits (298), Expect = 9.270e-27 Identity = 95/283 (33.57%), Postives = 140/283 (49.47%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCS-SGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEV-----------CIMTRPCD--STSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAIV---------SAMSDPNLSREQL-ARAKSDQQALTARLCKLTGVAK 777 +A+AIAA Y +EWP LV+CP+++R WR++ L+W+ L + +VK +E+ GR + +++Y L+ + ++VV DESH LK A+RTQ+ P+LR A RAI LSGTP L+RP E+ C D S W+ H P +H L+L+ TIMIRRLKEQV S+ LP K R + + + +E+ +++ A SAMS P+ + E R + L L LTG+AK Sbjct: 632 QALAIAAFYHNEWPFLVICPSSIRFQWRDQALRWLSELLVLDEICLVKSGRAEI---PGRTKMVIISYDLITKQKK----FMAPYQVVICDESHYLKNYQAKRTQAICPLLRSAKRAILLSGTPALNRPVELFQQFDALLPDLCTYREFADRYSVQVWNPFTRHFEYEGHQHPEELH---------LLLKHTIMIRRLKEQVHSE-LPRKIRSRVPIEIPAKELKEIREKMAELEAEGRPEAFLGGDSAMSGPDPNPENTDQRVSASSSPLVVELFTLTGLAK 897
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: A0A7S1U711_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U711_9STRA) HSP 1 Score: 119 bits (297), Expect = 9.990e-27 Identity = 92/291 (31.62%), Postives = 139/291 (47.77%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPR--LCSSGVTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVC-------------------IMTRPCDS---TSCWSHDNFLHTALAHHPPTPVHMPPIAPSAGLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQRSAI-------VSAMSDPNLSREQLARAKSDQQALTARLCKLTGVAKV 780 + +A AA Y +WPLLVL P +R NW+ EL+K++P L V VV + + S ++++ ++ +L + L F + ADESH LK+ A+RTQ+ALP++R A R + L+GTP LSRPAE+ MTR CD+ T W + A +L TIM+RRLK QVL++ +P K R + V + R+E+ Q + I + + N + E+L + KS++ L RL L G AK+ Sbjct: 198 QGVAFAAHYRADWPLLVLTPAGVRANWKKELMKFLPECVLADDEVRVVTKLADPIDDS----PVVILSWSMIEKLTSQKRLKPKMFGAIIADESHFLKSLDAKRTQAALPLMRAARRLLLLTGTPALSRPAELWPQLHAIAADTLFPRAAMNEFMTRYCDAHQGTFGWDTRGASNEA----------------ELAALLRDTIMVRRLKAQVLAENMPGKMRIMTCVEAPDEVRKEIDDGREQLNDIEMQIRNGARSTAGGNSADERLHKLKSERDTLMMRLWTLAGRAKI 468
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Match: L1JAD3_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAD3_GUITC) HSP 1 Score: 116 bits (290), Expect = 3.380e-26 Identity = 78/225 (34.67%), Postives = 125/225 (55.56%), Query Frame = 1 Query: 1 EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSG--VTVVKDSSSELCTSNGRRQAFVVTYGLLPRLVANGHLHAGQFRVVCADESHMLKTAGAQRTQSALPILREATRAICLSGTPVLSRPAEVCIMTRPCDSTSCWSHDNFLHTALAHHPPTPVHMPPIAPSA----GLILESTIMIRRLKEQVLSQMLPEKRREIIHVAVARDSRQELSALLSQ 657 +A+A+AAAY EWPLL++CP++LR NW E +W+ + V VV S + + +V+Y L R+ + + A F+VV ADESH +KT A RT++ +P+LR+A+RAI LSGTP LSRP E+ + C +S + + S ++L S++MIRRLK +VL + LP KRR+ + + VA +++ +++++ Sbjct: 48 QALAVAAAYKREWPLLIICPSSLRLNWAQECSRWLEGMKEEPLEVQVVMKGSDAIKGVD----VTIVSYDLATRM--SDAIKASSFKVVIADESHYIKTDKALRTRACMPLLRQASRAILLSGTPALSRPVEL-LSQLQCLQPKIFSSKREFQRRYCNAKQGRWGLDTSGASCLQELSILLSSSVMIRRLKREVLVE-LPAKRRQKVFINVANKDLKKIQSIMNR 264 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161532 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3313 ID=mRNA_3313|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_17:40452..42671+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGGCAATCGCCATCGCTGCCGCCTATGCGGACGAGTGGCCCCTTCTAGTback to top protein sequence of jgi.p|Trimin1|161532 >Trimin1|161532|e_gw1.17.135.1 ID=Trimin1|161532|e_gw1.17.135.1|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=263bp EAIAIAAAYADEWPLLVLCPTALRDNWRNELLKWVPRLCSSGVTVVKDSSback to top mRNA from alignment at Contig_17:40452..42671+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3313 ID=mRNA_3313|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2220bp|location=Sequence derived from alignment at Contig_17:40452..42671+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_17:40452..42671+ >mRNA_3313 ID=mRNA_3313|Name=jgi.p|Trimin1|161532|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=789bp|location=Sequence derived from alignment at Contig_17:40452..42671+ (Tribonema minus UTEX_B_3156 )back to top |