mRNA_3251 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160681
Unique NamemRNA_3251
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: A0A835ZAZ7_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.000e-41
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGGFIMXXXXXXXXXXXXXXGCSTEACRR 252
            QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGGFIMXXXXXXXXXXXXXXGCSTEACRR
Sbjct:    1 QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGGFIMXXXXXXXXXXXXXXGCSTEACRR 84
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: D7FVD5_ECTSI (Small ubiquitin-like modifier n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVD5_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 6.250e-17
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGG 174
            +TT+M KVFT YASRKG+ V  LRF+ DG R+ AEDTP    LED DQ+DCM+E QGG
Sbjct:   24 KTTRMEKVFTTYASRKGVSVSALRFLLDGSRVGAEDTPTSLELEDQDQIDCMLEQQGG 81
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: A0A7S2UU84_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU84_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.970e-15
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGG 174
            +TT+M KVFT YASRKG+QV+ LRF+ DG+R+    TP    LED DQ+DCM+E QGG
Sbjct:   43 KTTRMEKVFTTYASRKGVQVNALRFLLDGERVNPAHTPKMLDLEDQDQIDCMLEQQGG 100
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: A0A835YTL0_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.170e-13
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGGF 177
            +TT+M KVF+ YA RKG+Q   LRF+ DG R+    TP +  LED D +DCM+E QGG+
Sbjct:   39 KTTRMEKVFSTYAQRKGVQASALRFLLDGDRVDPNQTPGELDLEDQDMIDCMLEQQGGW 97
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: A0A7S4JPZ0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JPZ0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.090e-13
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    7 TKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGG 174
            TKMGKVF AYA RKG+Q + +RF+ DG RI  + TP    +EDGDQ+DC +E  GG
Sbjct:   78 TKMGKVFAAYAQRKGIQQNAVRFLLDGDRIADDSTPESLDMEDGDQIDCFLEQVGG 133
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: B7G0R2_PHATC (Small ubiquitin-like modifier n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0R2_PHATC)

HSP 1 Score: 67.4 bits (163), Expect = 9.720e-13
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGG 174
            +TTKM KVF  YA+RKG+QV+ LRF+ DG RI  + TP    LED DQ+DC++E  GG
Sbjct:   35 KTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLELEDQDQIDCVLEQTGG 92
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: A0A2V0PK35_9CHLO (Small ubiquitin-related modifier n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PK35_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.950e-12
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    4 TTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGGFI 180
            TTKM K+F AYA +K L    ++F+ DG+R++   TPAD G+EDGD +D M+E  GG +
Sbjct:   30 TTKMEKIFKAYAEKKALNAGAVKFLFDGQRVQGHQTPADLGMEDGDSMDAMLEQLGGSL 88
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: A0A7S2G492_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G492_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.790e-12
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGG 174
            ++T+  KVF+ YA RKG+ V  LRF+ DG+RI    +PA+  +ED DQ+DCM+E QGG
Sbjct:   58 KSTRFEKVFSTYAQRKGVNVASLRFLIDGERINPSQSPAELDMEDQDQIDCMLEQQGG 115
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: A0A830HS18_9CHLO (Small ubiquitin-related modifier n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HS18_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 5.690e-12
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    4 TTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGG 174
            +TKMGKVF AYAS+K ++   ++F+ DG RIK +DTP   GLE+ D++D M+E  GG
Sbjct:   29 STKMGKVFAAYASKKSVEQRSVKFLFDGNRIKEDDTPESLGLENDDEVDAMLEMVGG 85
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BLAST of jgi.p|Trimin1|160681 vs. uniprot
Match: K3X7L8_GLOUD (Ubiquitin-like domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X7L8_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 6.110e-12
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    7 TKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLDCMMEAQGGF 177
            TKM K+F+AYA RKG+ V  LRF+ DG RI  + TP    LED DQ+DC +E  GGF
Sbjct:   51 TKMEKIFSAYAQRKGVPVSALRFLLDGTRISGDQTPKMLELEDQDQIDCALEQVGGF 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160681 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAZ7_9STRA2.000e-41100.00Ubiquitin-like domain-containing protein n=1 Tax=T... [more]
D7FVD5_ECTSI6.250e-1763.79Small ubiquitin-like modifier n=2 Tax=Ectocarpus T... [more]
A0A7S2UU84_9STRA7.970e-1560.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YTL0_9STRA4.170e-1352.54Ubiquitin-related domain-containing protein n=1 Ta... [more]
A0A7S4JPZ0_9STRA5.090e-1357.14Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B7G0R2_PHATC9.720e-1356.90Small ubiquitin-like modifier n=3 Tax=Phaeodactylu... [more]
A0A2V0PK35_9CHLO1.950e-1249.15Small ubiquitin-related modifier n=1 Tax=Raphidoce... [more]
A0A7S2G492_9STRA3.790e-1251.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A830HS18_9CHLO5.690e-1252.63Small ubiquitin-related modifier n=1 Tax=Pycnococc... [more]
K3X7L8_GLOUD6.110e-1256.14Ubiquitin-like domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:1112509..1113544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160681|e_gw1.14.158.1
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
KEGG ModuleM00427
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG koko:K12160
GOsGO:0001221,GO:0001222,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016604,GO:0016605,GO:0016925,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019899,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031386,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
DescriptionSmall ubiquitinrelated modifier
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota
Evalue1.03e-17
Seed ortholog2880.D7FVD5
Hectar predicted targeting categoryother localisation
TranscriptId161003
TrackFilteredModels1
ProteinId160681
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160681gene_3251Tribonema minus UTEX_B_3156 geneContig_14 1112509..1113544 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3251_1exon_3251_1Tribonema minus UTEX_B_3156 exonContig_14 1112509..1112550 +
exon_3251_2exon_3251_2Tribonema minus UTEX_B_3156 exonContig_14 1113332..1113544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3251CDS_3251Tribonema minus UTEX_B_3156 CDSContig_14 1112509..1112550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160681Trimin1|160681|e_gw1.14.158.1Tribonema minus UTEX_B_3156 polypeptideContig_14 1112509..1113544 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3251 ID=mRNA_3251|Name=jgi.p|Trimin1|160681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_14:1112509..1113544+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGACAACAAAAATGGGCAAGGTGTTCACCGCATACGCATCGCGCAAGGG
CCTGCAGGTGGACCAGTTGCGCTTCATGTCGGACGGCAAGCGCATCAAGG
CAGAGGATACCCCCGCAGACTGCGGCCTCGAAGACGGCGACCAGCTGGAC
TGTATGATGGAGGCACAGGGGGGGTTCATCATGATGGAGGCACAAGGGGA
GTCCATCATGATGGAGGCACAAGGGGGGTGCAGCACCGAGGCTTGCCGGC
GATAA
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protein sequence of jgi.p|Trimin1|160681

>Trimin1|160681|e_gw1.14.158.1 ID=Trimin1|160681|e_gw1.14.158.1|Name=jgi.p|Trimin1|160681|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
QTTKMGKVFTAYASRKGLQVDQLRFMSDGKRIKAEDTPADCGLEDGDQLD
CMMEAQGGFIMMEAQGESIMMEAQGGCSTEACRR*
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mRNA from alignment at Contig_14:1112509..1113544+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3251 ID=mRNA_3251|Name=jgi.p|Trimin1|160681|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1036bp|location=Sequence derived from alignment at Contig_14:1112509..1113544+ (Tribonema minus UTEX_B_3156 )
CAGACAACAAAAATGGGCAAGGTGTTCACCGCATACGCATCGGTGAGTCA
CTTTCTTGAAGTAGATGTATTGCAACGTCTTTCGTTTGCAACAGACTTGG
TGCATCTGAGAAAGCTTGCGGCTTCTTCTTATAGAAGTATGGACTAGATG
CTTATTCTGAGTCTATTGTATGTTGTACGTGTTGCCAGCCTGTCATTGAC
TCAGAGGGTGTGCTGATTCGTATCTGTAATGGCATCGGATCATCGCTCTA
CAAAACTGACGTGACAATTCATCAGGGCAGGCGACCGTGTTCTTGGGAGG
TACGTCTTATTACGAAGGATGCATAAGGCAAGTTCTTCAAGTTACCGCCG
ATGTTGACACTGAAGCACCATGTGAGCAGAGCTGGAACATCTCATCGACA
ACCAAGCAGCACACACAGTCTACCTTGCCCCCGTCGCCACCAACATGTGT
ACTTTGTTGAAAAGTACATACAGTCCATGGGGATGCTGCATCGCAGTCAG
GTCAGTTACGAGGTGAAACTGCCAAACTCCACGGCTGACGCGTCGCTCAC
CAAACCAGTCGCATCGCTGCCGCCACAACGCTCCGCAGCGCGCAAGGCGT
GCAGGTGGACCAGCTGCGCTTCATGTCCGAAACTGCCACACTGAAAATGG
CTGATGCGTCGCTCACCGCACTGCGCATCGCTGCTGCTGCCACAACGCTC
CGCAGCGCAAGGGCCTGCAGGTGGACCAGCTGCGCTTCATGTCCGAAACT
GCCACACTCACAACGACTGATGAGTCACTCACCGCACGACTTGCATCGCT
GCTGCTGCCACAACGCTCCGCAGCGCAAGGGCCTGCAGGTGGACCAGTTG
CGCTTCATGTCGGACGGCAAGCGCATCAAGGCAGAGGATACCCCCGCAGA
CTGCGGCCTCGAAGACGGCGACCAGCTGGACTGTATGATGGAGGCACAGG
GGGGGTTCATCATGATGGAGGCACAAGGGGAGTCCATCATGATGGAGGCA
CAAGGGGGGTGCAGCACCGAGGCTTGCCGGCGATAA
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Coding sequence (CDS) from alignment at Contig_14:1112509..1113544+

>mRNA_3251 ID=mRNA_3251|Name=jgi.p|Trimin1|160681|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_14:1112509..1113544+ (Tribonema minus UTEX_B_3156 )
CAGACAACAAAAATGGGCAAGGTGTTCACCGCATACGCATCGCGCAAGGG
CCTGCAGGTGGACCAGTTGCGCTTCATGTCGGACGGCAAGCGCATCAAGG
CAGAGGATACCCCCGCAGACTGCGGCCTCGAAGACGGCGACCAGCTGGAC
TGTATGATGGAGGCACAGGGGGGGTTCATCATGATGGAGGCACAAGGGGA
GTCCATCATGATGGAGGCACAAGGGGGGTGCAGCACCGAGGCTTGCCGGC
GATAA
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