mRNA_3183 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|160591
Unique NamemRNA_3183
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A836CLG8_9STRA (Radical SAM core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG8_9STRA)

HSP 1 Score: 612 bits (1579), Expect = 2.500e-221
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 1
Query:    1 APAQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGTPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAIVAVAGRKPVPVGKAARAATASVS 936
            APAQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGTPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAIVAVAGRKPVPVGKAARAATASVS
Sbjct:    1 APAQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGTPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAIVAVAGRKPVPVGKAARAATASVS 312          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: D8LLN5_ECTSI (Radical SAM core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN5_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.300e-94
Identity = 178/395 (45.06%), Postives = 222/395 (56.20%), Query Frame = 1
Query:    7 AQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQP----------------------------------------------------------------------PPGTPANGQRR-------------------------LLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLG--NMAIVAVAGRKPVPV 900
            A DGT KLV   + G   G  VETV+IPML+GPQ++ RYTVCVSSQVGCAMNCQFC TGR+GL+ANLQAAQIVEQV++AKR+L  +GD +P+TGVVFMGMGEPFDNY+ V +AV+++T+    G+RL A  VTVSTVG+VP+I +FC+DP   A+LA+SLH+  D  RD L+PVN+R+ LE L +                                                                       PP  P   Q+R                         +L ++YTLL GVN+SL D  RL      + CVVNLITFN H GTPF  +    A AF  A++A G LCT R+S+GDDG +ACGQLG  +MA      RKPVPV
Sbjct:  194 AADGTRKLVSVLTSGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMNCQFCFTGRLGLMANLQAAQIVEQVLVAKRYLETVGDPSPVTGVVFMGMGEPFDNYDRVMRAVKILTDPRA-GVRLKASSVTVSTVGLVPQIERFCKDPANGASLAISLHSVVDEVRDKLIPVNRRYPLEQLSETLRTHFPRSSKPAADEPTGVALDHASSAAAPALGPKDVATGSAERKSMAGPGRKLEQETNLLARRDGAERRPPSIPTEPQQRPRSLADGGGSKREGPQRKGRRRRPRILAVEYTLLGGVNDSLGDAGRLAEWLEGVACVVNLITFNAHAGTPFSPSSPEAAEAFRRALAARGQLCTFRDSRGDDGMAACGQLGGESMAGGGDRARKPVPV 587          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A250XDL1_9CHLO (Radical SAM core domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XDL1_9CHLO)

HSP 1 Score: 280 bits (715), Expect = 1.140e-88
Identity = 150/301 (49.83%), Postives = 207/301 (68.77%), Query Frame = 1
Query:    7 AQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGT-PANGQ--RRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAIVAVAGRKPVPV 900
            A+DGT K+  K + G A GG +ETV+IP+++   Q+ R T+C+S+QVGCAMNCQFC+TGRMGLL NL  AQ+VEQ+V AKR+L E GD TP+T VVFMGMGEP  N E V  A+++M  K   GL +S G++TVSTVG+VP IR+F    + +  LAVSLHAT D  RDW+VPVN+RH+LE+L+       P +G+   R+++I+Y +LRGVN++ ED  RL  L  ++   +NLI FN H GT F  +E    + F + +   G +CT+R+S+GDD  +ACGQLG++ +      KP P+
Sbjct:  101 AKDGTRKMAFKLTEGPAKGGVIETVLIPVVREAGQRCRITICLSTQVGCAMNCQFCYTGRMGLLGNLSTAQVVEQIVHAKRYLAEQGDRTPLTNVVFMGMGEPLHNMEVVLNAIEIM--KCPLGLHMSPGKLTVSTVGLVPEIREFVSRSS-KVQLAVSLHATTDEVRDWIVPVNRRHNLESLVSCLGELFPIDGEDRSRIVLIEYIMLRGVNDTEEDAHRLLNLLSKVRAKINLILFNPHAGTKFLPSETEVVSRFRSILIQGGRVCTVRDSRGDDEMAACGQLGDIGLAF----KPAPM 394          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: D8UF95_VOLCA (Radical SAM core domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UF95_VOLCA)

HSP 1 Score: 275 bits (702), Expect = 4.690e-88
Identity = 147/289 (50.87%), Postives = 196/289 (67.82%), Query Frame = 1
Query:    1 APAQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGTPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAI 867
            A A DGT KLV   + G A GG+VETV+IP+++    + R T+CVSSQVGCAMNCQFC+TGRMGLL NL  AQIVEQVV A+R L + G+ T +T +VFMGMGEP  N E V  A  +++     GL +S  +VT+STVG+VP +R        R  +A+SLHAT D  RDW+VPVN+R+DL TL         N   R L+I+YT+L G+N++L+D  RL A+  R++C VNLI FN H GT F+ + E    AF +A+  +G +CT+R+S+GDD  +ACGQLGN+ +
Sbjct:    9 ARAADGTRKLVFTLTEGEAAGGSVETVLIPIVRQQGLRDRLTICVSSQVGCAMNCQFCYTGRMGLLGNLTTAQIVEQVVEARRFLAQEGERTQLTNLVFMGMGEPLHNTEAVLAAADIVSHY--LGLHISHNKVTISTVGLVPEMRSVVA--RSRVQMALSLHATTDEVRDWIVPVNRRYDLATLTAALEEL-GNSSSRSLLIEYTMLHGINDTLQDAHRLVAMLARVNCKVNLIMFNPHAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACGQLGNVGL 292          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A8J4CAH3_9CHLO (Radical SAM core domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CAH3_9CHLO)

HSP 1 Score: 269 bits (688), Expect = 2.900e-83
Identity = 155/308 (50.32%), Postives = 199/308 (64.61%), Query Frame = 1
Query:    7 AQDGTIKLV---CKASHGTALGGA---VETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLM----QPPPGTPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAIVAVAGRKPVPV 900
            A+DGT KLV    +  HG+  GG    VETV+IPM     Q  RYT C+S+QVGCAMNCQFC+TGRMGLLANL  AQIVEQVV A+R+L E      I  +VFMGMGEP  NY+ V  A++++     TGL LS  ++ VSTVG+VP +R+F       A LAVSLHAT D  RDW+VP N+R+ L+ L+    +  P     G    +VI+Y LL GVN++LED  RL A+   ++C+VNLI FN H GTPFRR+ E +  AF     A+G  CT+R SKGDD  +ACGQLG++ + A    +P P+
Sbjct:  185 ARDGTRKLVFALLEGEHGSPAGGTHGTVETVLIPMTNRSGQNLRYTACLSTQVGCAMNCQFCYTGRMGLLANLATAQIVEQVVEARRYLAEQSVPIRIANIVFMGMGEPLHNYDAVMAAIEILA----TGLELSRNKIIVSTVGLVPEMRKFIAAGT--AKLAVSLHATTDEVRDWIVPTNRRYPLDQLLGALREAFPYDKRKGDN-FVVIEYVLLAGVNDTLEDAQRLLAITTDIYCLVNLIVFNPHEGTPFRRSTEESVRAFRGVFLAAGRPCTVRTSKGDDEMAACGQLGDVNLSA----RPAPM 481          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A061QU93_9CHLO (23S rRNA (Adenine2503-C2)-methyltransferase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QU93_9CHLO)

HSP 1 Score: 263 bits (671), Expect = 5.640e-81
Identity = 141/289 (48.79%), Postives = 189/289 (65.40%), Query Frame = 1
Query:    7 AQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQP-----PPGTPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGN 858
            A DGT KLV + S G A GG VE V+IP+L+   +K+R T+CVSSQ+GCAMNCQFC TGRMGL  NL  AQIVEQ+V A+R+L  +GD TPIT VVFMGMGEP  N + V  A  +     G  L +S  +++VSTVG+VP + +FC + +  A LAVSLHAT D  RDW+VPVN+R+ +  LM       P    A   RR ++I+Y +LRG+N++ +D  RL  L   +   +NL+ FN H GT F  + +   A F + +   G +CT+R+S+GDD  +ACGQLG+
Sbjct:  174 ASDGTRKLVFRVSEGPAAGGKVEAVLIPILRSSGRKERITLCVSSQLGCAMNCQFCLTGRMGLGGNLLTAQIVEQLVEARRYLASVGDKTPITNVVFMGMGEPLHNLDAVLAATSIFCHPMG--LHMSHNKISVSTVGLVPEMERFCRESS--AQLAVSLHATTDEVRDWIVPVNRRYPIHELMASLRSLFPSQDGAGSTRRHVLIEYLMLRGINDTEDDARRLLELLEGIEAKINLLIFNPHVGTMFAASTDEQIARFRSILIQGGRVCTVRDSRGDDQMAACGQLGD 458          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A2K3E2V3_CHLRE (Radical SAM core domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E2V3_CHLRE)

HSP 1 Score: 262 bits (670), Expect = 7.350e-81
Identity = 150/296 (50.68%), Postives = 191/296 (64.53%), Query Frame = 1
Query:    7 AQDGTIKLVC------KASHGTA--LGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGTPANGQRR---LLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNM 861
            A+DGT KLV       +   G A    G VETV+IPM     Q  RYT C+S+QVGCAMNCQFC+TGRMGLL NL  AQIVEQVV A+R+L E     PI  +VFMGMGEP  NY+ V  A++++     TGL LS  ++ VSTVG+VP +R+F      RA LAVSLHAT D  RDW+VP N+R+ L+ L+         G+R+    +VI+Y LL GVN++L D  RL AL   ++C+VNLI FN H GT F+R+ +    AF A   A+G  CT+R SKGDD  +ACGQLG++
Sbjct:  174 ARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTNRQGQNLRYTACLSTQVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAEQEVQIPIANIVFMGMGEPLHNYDAVMSAIEILA----TGLELSRNKIIVSTVGLVPEMRRFIASG--RAKLAVSLHATTDEVRDWIVPTNRRYPLDQLLGALREAFPYGKRKGDDFVVIEYVLLAGVNDTLADAERLLALTSDIYCLVNLIVFNPHDGTQFKRSSDDDVRAFRAVFLAAGRPCTVRASKGDDEMAACGQLGDV 463          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A8J4FD97_9CHLO (Radical SAM core domain-containing protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4FD97_9CHLO)

HSP 1 Score: 261 bits (667), Expect = 4.060e-80
Identity = 151/307 (49.19%), Postives = 197/307 (64.17%), Query Frame = 1
Query:    7 AQDGTIKLVCKA----SHGTALG--GAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGTPANGQRR---LLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAIVAVAGRKPVPV 900
            A+DGT KLV         G A G  G VETV+IPM     +  RYT C+S+QVGCAMNCQFC+TGRMGLLANL  AQIVEQVV A+R+L E      I  +VFMGMGEP  NY++V   ++++     TGL LS  ++ VSTVG+VP +R+F       A LAVSLHAT D  RDW+VP N+R+ L+ L+     +    +R+    +VI+Y LL GVN++LED  RL AL   ++C+VNLI FN H GTPFRR+ + +  AF      +G  CT+R SKGDD  +ACGQLG++ + A    +P P+
Sbjct:  186 ARDGTRKLVFALLGAEQGGPARGTHGTVETVLIPMTNRSGENLRYTACLSTQVGCAMNCQFCYTGRMGLLANLTTAQIVEQVVEARRYLAEQSVPIRIANIVFMGMGEPLHNYDSVMATIEILA----TGLELSRNKIIVSTVGLVPEMRKFIAAGT--AKLAVSLHATTDEVRDWIVPTNRRYPLDQLLGALRESFPYDKRKGDDFVVIEYVLLAGVNDTLEDAQRLLALTSDIYCLVNLIVFNPHEGTPFRRSADESVRAFRGVFLTAGRPCTVRTSKGDDEMAACGQLGDVNLSA----RPAPM 482          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A383WDR8_TETOB (Radical SAM core domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WDR8_TETOB)

HSP 1 Score: 257 bits (657), Expect = 4.820e-79
Identity = 147/293 (50.17%), Postives = 192/293 (65.53%), Query Frame = 1
Query:    1 APAQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLN-EIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETL---MQPPPGTPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAI 867
            A A+DGT KLV K + G   GG+VE V+IPM      +K  T+CVSSQVGCAMNCQFC+TGRMGL  NL  AQI+EQ+V+A R L  +      IT VVFMGMGEP  NYE V  AV+VM +    GL +S  +VTVSTVG+V  + +F    N++  LA+SLHAT D  RDW+VPVN+RH+L  L   ++   GT  N   R ++++YT+L GVN+SL+D  RL AL   +   VNLI FN   GT F+ +      AF + +  +G +CT+R+S+GDD  +ACGQLGN A+
Sbjct:  176 AAAKDGTTKLVFKLTEGEGAGGSVEAVLIPMTHRRGSRKHITLCVSSQVGCAMNCQFCYTGRMGLSGNLTTAQIIEQMVVACRVLAADPSADASITNVVFMGMGEPLHNYEAVMAAVEVMCQP--LGLHMSHNKVTVSTVGLVDVLERFAASSNVQ--LALSLHATTDEVRDWIVPVNRRHNLAALTAVLRQHYGT-GNAAGRRVLVEYTMLAGVNDSLQDAQRLVALLEGVDAKVNLIMFNPFQGTRFKPSTIEQVLAFRSVLIQAGRICTIRDSRGDDEMAACGQLGNPAL 463          
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Match: A0A250X327_9CHLO (Radical SAM core domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X327_9CHLO)

HSP 1 Score: 256 bits (654), Expect = 2.170e-78
Identity = 146/299 (48.83%), Postives = 192/299 (64.21%), Query Frame = 1
Query:    7 AQDGTIKLVCKASHGTALG-GAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLN-EIGDTT-----PITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPG-------TPANGQRRLLVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEEHTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNM 861
            AQDGT KLV   + G     G VETV+IPM        RYT C+S+QVGCAMNCQFC+TGRMGLL NL  AQIVEQVV A+R L+ E  D+      PI  +VFMGMGEP  NY  +  A+ ++ E    GL LS  ++ VS+VG+VP IR F +    +A LAVSLHAT D  RDW+VPVN+R+ ++ L+    G         +N   + +VI+Y LLR +N++ ED VRL  L + ++C+VNLI FN H GT F+ +EE +   F + +  +G +CT+R SKGDD  SACGQLG++
Sbjct:  174 AQDGTKKLVFALNQGEGSAMGTVETVLIPMPNKNGINSRYTACLSTQVGCAMNCQFCYTGRMGLLGNLTTAQIVEQVVEARRMLSQEASDSAGASEIPIGNIVFMGMGEPLHNYNALLAAIDILAE----GLCLSRSKIIVSSVGLVPEIRSFLD--TKKAKLAVSLHATTDEVRDWIVPVNRRYPIKELISLLQGYFPMSNAKQSNTSDKFVVIEYVLLRHINDTAEDAVRLSDLLKDVYCMVNLIVFNPHEGTQFKGSEEESVKTFRSILVKAGKVCTVRVSKGDDTMSACGQLGDL 466          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160591 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLG8_9STRA2.500e-221100.00Radical SAM core domain-containing protein (Fragme... [more]
D8LLN5_ECTSI1.300e-9445.06Radical SAM core domain-containing protein n=2 Tax... [more]
A0A250XDL1_9CHLO1.140e-8849.83Radical SAM core domain-containing protein n=1 Tax... [more]
D8UF95_VOLCA4.690e-8850.87Radical SAM core domain-containing protein (Fragme... [more]
A0A8J4CAH3_9CHLO2.900e-8350.32Radical SAM core domain-containing protein n=1 Tax... [more]
A0A061QU93_9CHLO5.640e-8148.7923S rRNA (Adenine2503-C2)-methyltransferase n=1 Ta... [more]
A0A2K3E2V3_CHLRE7.350e-8150.68Radical SAM core domain-containing protein n=3 Tax... [more]
A0A8J4FD97_9CHLO4.060e-8049.19Radical SAM core domain-containing protein n=3 Tax... [more]
A0A383WDR8_TETOB4.820e-7950.17Radical SAM core domain-containing protein n=1 Tax... [more]
A0A250X327_9CHLO2.170e-7848.83Radical SAM core domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:623095..627287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|160591|e_gw1.14.11.1
BRITEko00000,ko01000,ko03009
KEGG koko:K06941
EC2.1.1.192
DescriptionRadical SAM superfamily
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0820@1|root,2QV91@2759|Eukaryota
Evalue2.13e-95
Seed ortholog2880.D8LLN5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-04_005080.1
TranscriptId160913
TrackFilteredModels1
ProteinId160591
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160591gene_3183Tribonema minus UTEX_B_3156 geneContig_14 623095..627287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160591Trimin1|160591|e_gw1.14.11.1Tribonema minus UTEX_B_3156 polypeptideContig_14 623095..627287 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3183_7exon_3183_7Tribonema minus UTEX_B_3156 exonContig_14 623095..623318 -
exon_3183_6exon_3183_6Tribonema minus UTEX_B_3156 exonContig_14 623975..624128 -
exon_3183_5exon_3183_5Tribonema minus UTEX_B_3156 exonContig_14 624504..624666 -
exon_3183_4exon_3183_4Tribonema minus UTEX_B_3156 exonContig_14 625433..625525 -
exon_3183_3exon_3183_3Tribonema minus UTEX_B_3156 exonContig_14 626066..626139 -
exon_3183_2exon_3183_2Tribonema minus UTEX_B_3156 exonContig_14 626612..626698 -
exon_3183_1exon_3183_1Tribonema minus UTEX_B_3156 exonContig_14 627144..627287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3183CDS_3183Tribonema minus UTEX_B_3156 CDSContig_14 627144..627287 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3183 ID=mRNA_3183|Name=jgi.p|Trimin1|160591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=939bp|location=Sequence derived from alignment at Contig_14:623095..627287- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTCCTGCGCAGGATGGCACAATCAAGCTGGTGTGTAAAGCATCACATGG
CACCGCACTGGGAGGTGCTGTGGAAACGGTTGTGATACCCATGCTGCAGG
GTCCACAGCAGAAGAAGCGGTACACAGTGTGCGTATCAAGTCAGGTGGGA
TGCGCGATGAACTGCCAGTTCTGCCATACAGGGCGCATGGGGCTGCTGGC
CAACCTGCAGGCAGCACAAATCGTCGAACAGGTGGTCATAGCCAAGCGGC
ATCTCAACGAAATTGGTGACACGACACCCATCACGGGCGTTGTCTTCATG
GGCATGGGAGAGCCATTTGACAATTATGAAAATGTCAGCAAGGCCGTGCA
AGTGATGACAGAAAAAAGCGGCACTGGCCTGCGGCTTTCTGCTGGCAGGG
TCACTGTCTCCACCGTGGGCATTGTGCCACGCATTCGACAGTTCTGTGAA
GACCCTAACATGCGCGCCAACCTAGCTGTCAGCTTGCACGCCACGGAAGA
CACTACAAGGGACTGGCTGGTGCCTGTGAACCAGCGGCATGATCTGGAAA
CATTAATGCAGCCACCGCCAGGCACCCCTGCCAACGGCCAGCGCCGCCTG
CTCGTCATACAGTATACATTGCTACGGGGGGTCAACAATTCCTTGGAGGA
TGGTGTTCGGCTTGGGGCACTCGCCCGACGCCTGCACTGCGTAGTCAATC
TTATTACTTTCAATGATCATCCAGGCACGCCCTTTCGGCGAGCAGAAGAA
CACACTGCAGCCGCATTCAGTGCTGCCGTCAGTGCATCGGGGACACTTTG
CACACTGCGCGAGAGCAAAGGTGACGACGGAGCGAGTGCATGTGGACAGC
TGGGAAACATGGCAATAGTTGCCGTCGCTGGCAGAAAACCAGTGCCTGTG
GGGAAGGCCGCCAGGGCGGCCACGGCATCAGTATCATAG
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protein sequence of jgi.p|Trimin1|160591

>Trimin1|160591|e_gw1.14.11.1 ID=Trimin1|160591|e_gw1.14.11.1|Name=jgi.p|Trimin1|160591|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=313bp
APAQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVG
CAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFM
GMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCE
DPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLMQPPPGTPANGQRRL
LVIQYTLLRGVNNSLEDGVRLGALARRLHCVVNLITFNDHPGTPFRRAEE
HTAAAFSAAVSASGTLCTLRESKGDDGASACGQLGNMAIVAVAGRKPVPV
GKAARAATASVS*
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mRNA from alignment at Contig_14:623095..627287-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3183 ID=mRNA_3183|Name=jgi.p|Trimin1|160591|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4193bp|location=Sequence derived from alignment at Contig_14:623095..627287- (Tribonema minus UTEX_B_3156 )
GCTCCTGCGCAGGATGGCACAATCAAGCTGGTGTGTAAAGCATCACATGG CACCGCACTGGGAGGTGCTGTGGAAACGGTTGTGATACCCATGCTGCAGG GTCCACAGCAGAAGAAGCGGTACACAGTGTGCGTATCAAGTCAGGTGGGT TGCTTCGGTGTTGCATTCCATTAAAGCACAAATTTGAGAACATGTACAGC TTGTGGATTGTTGCATTCAGCAAGCAATAGCGAGATCAGACAGCCTGTCT GGTTATAGCTTAGGTGAAAATTGCTTTTGGCCTTGACCCGTGGTACTCTT GGAGTAGTTTCTTGCCTGTGTGGAGCGTTGCAGGAACTTTGAGGCACTCG TCAAATGCGCTTGTTTGCTTGACGTGCATGTACAGAAAAATGCAATCTGA TATTGCATTTGATTGGAGTTGTTACAGTACCATGGCATTCATCCGCGGGT GCACACTGGGCACCATTTCACCACATTTGCTGGCTGTGGTTGCTACATGG TCTGCAATGTAACAGTTCTTACTCTGCAAAAAGCTGCTTCAGCTCCTGAG ATATTTCATGTTTTTGCGTTCGTGTGTATGTGTGCATAGGTGGGATGCGC GATGAACTGCCAGTTCTGCCATACAGGGCGCATGGGGCTGCTGGCCAACC TGCAGGCAGCACAAATCGTCGAACAGGTACGTTTTCCCCCTGATTCAGCT ACTGCTGAGCGCACTTTGCAGCTGGTGGTCATCATGGCGTTGCGGCAATC CAGTTCATTATTTGTTGCCACTCGTTGAAAGGTGGTGCAAGGTACATCTT GTGCAGACTCAAGGTCACTGTGCCTACTTGCGTGCATGTTGACGGACCGA CGGTTCCCTGGAGGCCTGATGCATTGCCTGCGCAGTCTGGTGATCCTAGG GCTGTACTCAAGAGGGTGTGCGTGGCGTCTTGACGTGTCTGGATGAGTGC ACTACTTTTGTCAGCCAATACCTCTTCGTGCATGACCAGTTATGATAACG TTTGCGGTGCAGCATATTTCACAGTACTGACTTGATGGCAATGTGAATAG CAGGTGTCGACTTTGGTCTGCGCATTTGTGCATGCACCTCCCTGCCAGCA CTTTACTGATATGTGTACTTCGCATGATGTCATTGTATCATATTGCAGGT GGTCATAGCCAAGCGGCATCTCAACGAAATTGGTGACACGACACCCATCA CGGGCGTTGTCTTCATGGGCATGTGAGATTGAATGGTCAATGCGTGCGTG TAGGTTTAGAGTGCACGGAAACGGGCGCGCCTGCACGTGTTGGTACATGC GCGTATGGCCACATGCTTCGCGAACGACGCAGCAATGCGTATTTTCATGC ATGTTCATCAAACAGTGCAAGTCAGCAGTTTATGTCACCAATGAATCTCT GGAAACTCCCAGCCAACTGCCTGAACACTTCTATCGCACCTTGTTGTATT GTGTTCAGTTGCAGCAGCGTCATGTCACAGTTGCTGCAGGTGCTGTGTAC TGTACCCTTTCTCATGTATACATAAACATAGCTGCTCTTTAAGTTGTTGC TGCTGCTGCTATCACTGCTGCAACTGCTGCTGCTGCAACGCTCTGGGTAG CTTAAGGTCTGTAAGGTGTCCATTGCGCGTTCCTGTCCTATATGTGTGCT TGCAAGCAACTAAGAACCTGCTGCCGCTGTTATGCTTTTGGCAATTGCTG CATTCTACATCTTAGGCATCTCACAACATGTGCTTTTACCACGTGTGTTT GTCCGTTGACAGGGGAGAGCCATTTGACAATTATGAAAATGTCAGCAAGG CCGTGCAAGTGATGACAGAAAAAAGCGGCACTGGCCTGCGGCTTTCTGCT GGCAGGTACGCCGATTCCATTACTTGAGAAACGTTCACTCACAAAAACTG CGATGATCTCAGACGTAATGCCGCCTGAGCACTTTGTTGCTGCCACCAAG AATTGCACTTGTGTTTGCCGTGCGATCTGTGCGTCTCAAGCCACGGGCTA TGCAAAGCAGGAGGCATCCGCTGGTGTTGTAGATAATGTGGTTCTGCGAC AATCTATGGAAATTTTGTGCTTCCACCAATGGTATGCTGCAGTACTCTGG TCAGTAAATGCACATCCTGTGACCTTGTATGTAGCTGCTGTCTCGTGAAG AGACAAGATCAAACTGTGGCACGGCGCCTGCCAGAGGCTTCTCCAAAGCG TGCGCACTTCAAATTTTAATTTTTATCTCTCCAGCCAGCGCAGTTGTCAT GCCTCATATCTCTTGCCAACCCCCTCAACTGCGTGTGGGACATTTCATTA CGTCGCCAATGTAACCACGTAGCTTGAAGACTTCTACAGATGTGAAGCAA CATTCAGAGGTCCCAACCAAGTGTCCATTACACCATGCAGATGAAGGATG AAGGTGAGATCTTCCAGAACTGGCCCCCAAAGTCAGCGCTAATACACACT CACTTGTATCTTTGCCTGGTCAATTGGTGCTGCTATTGAACCCACAAAAA ATGTTTGCCATGTGTAATTCGAGTGGTATGAGACACAACAGATTTGACAT TTGCACATTGGAGCGCAATCACCAGCTGGTGCTGATTGTTTGCATGCCTC TCTCATGCTGTCGTTGTGCAGGGTCACTGTCTCCACCGTGGGCATTGTGC CACGCATTCGACAGTTCTGTGAAGACCCTAACATGCGCGCCAACCTAGCT GTCAGCTTGCACGCCACGGAAGACACTACAAGGGACTGGCTGGTGCCTGT GAACCAGCGGCATGATCTGGAAACATTAATGCAGGTTAGAATCCTGGTCA CGTGCTTTTGCTGACTAGAACTTTGAACTACTGCCGTAGGGCTGCAGGAC TTACGAACATCAGCATTCCCTCCATGCAATCTTTCTTTCACAGAAGCTGG TGAGGTATTGTGACACAGTACACGGCTTTCAACACTTGCTGTATTTGCAG TCTCATATGTACGCAATCATGAAATGCCGCCAGATGTGTGATATATTCAA TGCTTGTTTGGATGTATGCCAATAACTTCGTGCTGAGAGCAATCGTCACA CAAGGCGCTGATTTTGAGGTGATGGCCATGACCCAGGTGCTCTTGTTGAT TCTGCTCGTATTCTTGTTCCATATCTGCTCAGACACTGGAGGAGTTTTTC CCACGCGAGCCACCGCCAGGCACCCCTGCCAACGGCCAGCGCCGCCTGCT CGTCATACAGTATACATTGCTACGGGGGGTCAACAATTCCTTGGAGGATG GTGTTCGGCTTGGGGCACTCGCCCGACGCCTGCACTGCGTAGTCAATCTT ATTACTTTCAATGGTGAGTGCTGCCTTTGGCGATCTTGATGTTGTGTGGC CATGCATTGTGCATGGTGAATTGATGGTGCGACCGCCCACTTCATGCGGA TTGTGGGCCAAGCAAGCAACCATTGCATGCTGCCTGCACTAGGGCCTTGA CGCTCTAGCGTTTGAGTGTCGTTATGTTTGTCAGCAACGGAGACATCAGC TGCCATGCCATATTTTCTGCATGGACAGTCAGCACATCACAATGCTTCGG CAAAATGGTCGAAGGAGAACACAATCAAATAATTACAAAAGGGTTTGAGA AGGTCCATCTGCGTCGGCATCCAGCAAGGCACCTCTATCGACTCGTGACA ACAAGAAGTCGGTGCATGACAACATGACAGGGACTCATTGTGCTGTTGTA TACCTTTGCTGAGACCTGGACATGAATGAATGGTTACATGGAGAGAATTC CCCCCGCGTTCACACCTTGCCAACTTCGTTGGCAGGCGAATGGCTGCCAT GTTCATGCAGTTTGCTCGACCCATACATGCAGTGCTATAGATGCTGCCAC AAGCGGACTTTACATGAGATACCTTTGCTGTTTGCTAATGACTTGCACGT TGATACCTTTGCTGTTTGCTAATGACTTGCACGTTGGCATGCCATTGTTG ACATGTGCTGTCTTCACAGATCATCCAGGCACGCCCTTTCGGCGAGCAGA AGAACACACTGCAGCCGCATTCAGTGCTGCCGTCAGTGCATCGGGGACAC TTTGCACACTGCGCGAGAGCAAAGGTGACGACGGAGCGAGTGCATGTGGA CAGCTGGGAAACATGGCAATAGTTGCCGTCGCTGGCAGAAAACCAGTGCC TGTGGGGAAGGCCGCCAGGGCGGCCACGGCATCAGTATCATAG
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Coding sequence (CDS) from alignment at Contig_14:623095..627287-

>mRNA_3183 ID=mRNA_3183|Name=jgi.p|Trimin1|160591|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=939bp|location=Sequence derived from alignment at Contig_14:623095..627287- (Tribonema minus UTEX_B_3156 )
GCTCCTGCGCAGGATGGCACAATCAAGCTGGTGTGTAAAGCATCACATGG
CACCGCACTGGGAGGTGCTGTGGAAACGGTTGTGATACCCATGCTGCAGG
GTCCACAGCAGAAGAAGCGGTACACAGTGTGCGTATCAAGTCAGGTGGGA
TGCGCGATGAACTGCCAGTTCTGCCATACAGGGCGCATGGGGCTGCTGGC
CAACCTGCAGGCAGCACAAATCGTCGAACAGGTGGTCATAGCCAAGCGGC
ATCTCAACGAAATTGGTGACACGACACCCATCACGGGCGTTGTCTTCATG
GGCATGGGAGAGCCATTTGACAATTATGAAAATGTCAGCAAGGCCGTGCA
AGTGATGACAGAAAAAAGCGGCACTGGCCTGCGGCTTTCTGCTGGCAGGG
TCACTGTCTCCACCGTGGGCATTGTGCCACGCATTCGACAGTTCTGTGAA
GACCCTAACATGCGCGCCAACCTAGCTGTCAGCTTGCACGCCACGGAAGA
CACTACAAGGGACTGGCTGGTGCCTGTGAACCAGCGGCATGATCTGGAAA
CATTAATGCAGCCACCGCCAGGCACCCCTGCCAACGGCCAGCGCCGCCTG
CTCGTCATACAGTATACATTGCTACGGGGGGTCAACAATTCCTTGGAGGA
TGGTGTTCGGCTTGGGGCACTCGCCCGACGCCTGCACTGCGTAGTCAATC
TTATTACTTTCAATGATCATCCAGGCACGCCCTTTCGGCGAGCAGAAGAA
CACACTGCAGCCGCATTCAGTGCTGCCGTCAGTGCATCGGGGACACTTTG
CACACTGCGCGAGAGCAAAGGTGACGACGGAGCGAGTGCATGTGGACAGC
TGGGAAACATGGCAATAGTTGCCGTCGCTGGCAGAAAACCAGTGCCTGTG
GGGAAGGCCGCCAGGGCGGCCACGGCATCAGTATCATAG
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