mRNA_3177 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA) HSP 1 Score: 384 bits (985), Expect = 1.090e-134 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1
Query: 1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALSPLPCALEPMAIGNGAGASGCNGGSGATQAARNSRSAVGALQVCALFNTLLV 585
MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALSPLPCALEPMAIGNGAGASGCNGGSGATQAARNSRSAVGALQVCALFNTLLV
Sbjct: 1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALSPLPCALEPMAIGNGAGASGCNGGSGATQAARNSRSAVGALQVCALFNTLLV 195
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI) HSP 1 Score: 125 bits (314), Expect = 6.360e-33 Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 1
Query: 1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAA-------TLEQVLVGDDALEA-DMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTF 417
M+ GVN A F+G +++ YPF + +RR+D RV +VQEM + + L VL G+D LEA A + TR+KA IEG A+ LGDF VRVG C+KG+ +RGLA+EVEY PC+ V DG +MIEA +P++D GTF
Sbjct: 1 MKHGVNLAAPFVGM-KKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSYAAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTF 146
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A1X2GNR4_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GNR4_9FUNG) HSP 1 Score: 59.3 bits (142), Expect = 1.870e-7 Identity = 33/115 (28.70%), Postives = 61/115 (53.04%), Query Frame = 1
Query: 85 NVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAV--------IEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 405
N ++R + +G+R L ++ G +EA+ + + TRLK + IEG+++ + DFT+RV GSTY+GL +E++YHPC+ R+ + + + ++ P
Sbjct: 48 NAMQRQGNDSKAMHQVALGQRPGQLYCMVDGGVVVEAEKEMESIF-TRLKNIWQLRQSITIEGTSYDIDDFTLRVANILVGSTYKGLLLEIDYHPCTIPRNADDLFREFIASILP 161
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A163K9Z0_ABSGL (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Absidia TaxID=4828 RepID=A0A163K9Z0_ABSGL) HSP 1 Score: 58.9 bits (141), Expect = 2.590e-7 Identity = 34/118 (28.81%), Postives = 59/118 (50.00%), Query Frame = 1
Query: 73 FDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAK-------KVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAM----IEALLP 393
+ V+R + G+V +G++ L ++ G +EA+ K + R IEG++F + DFT+RV GSTY+GL +E++YHPC + + +E++LP
Sbjct: 44 YREAGAVQRQGKDGKVMYQVALGQQPGQLYCMIDGGVVIEAEKEMESILSRLKNIWQLRQSITIEGTSFDIDDFTLRVANILVGSTYKGLLLEIDYHPCFVPHNANDLFREFVESILP 161
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: I1BH49_RHIO9 (Mediator of RNA polymerase II transcription subunit 20 n=7 Tax=Rhizopus TaxID=4842 RepID=I1BH49_RHIO9) HSP 1 Score: 58.9 bits (141), Expect = 2.620e-7 Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 226 RLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 405
R IEG+++ +GDFT+RV GSTY+GL +EV+YHPCS+ + + + + ++ P
Sbjct: 103 RQNVTIEGTSYEIGDFTLRVANILLGSTYKGLLLEVDYHPCSTPNNASELFKEFVQSIVP 162
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A068SAS8_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SAS8_9FUNG) HSP 1 Score: 58.9 bits (141), Expect = 3.250e-7 Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1
Query: 91 VRRSDEPGRV-CLVQEMGKRAATLEQVLVGDDALEADMAK-KVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSS 354
V +PG+V C+V V+ + LE +++ K + R VIEG++F +GDFT+RV GSTY+GL +E+ YHPCS+
Sbjct: 82 VTLGQQPGQVYCMVDG--------SVVVEAEKELEIILSRLKNLWQMRQSVVIEGTSFEIGDFTLRVANILLGSTYKGLLLEISYHPCSA 163
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A1C7NR90_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NR90_9FUNG) HSP 1 Score: 56.6 bits (135), Expect = 4.020e-7 Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query: 226 RLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 405
R IEG+++ +GDFT+RV GSTY+GL +E+ YHPCS+ + + + + ++ P
Sbjct: 15 RQSVTIEGTSYEIGDFTLRVANILLGSTYKGLLLEIGYHPCSTPNNTSLLFQEFVQSIVP 74
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A0B7NLA6_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=9 Tax=Mucorineae TaxID=1344963 RepID=A0A0B7NLA6_9FUNG) HSP 1 Score: 57.8 bits (138), Expect = 6.710e-7 Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 226 RLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 405
R IEG+++ +GDFT+RV GSTY+GL +E++YHPC++ + + + + ++ P
Sbjct: 101 RQSVTIEGTSYEIGDFTLRVANILLGSTYKGLLLEIDYHPCTTPNNASKLFQEFVESIVP 160
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A162WTP1_PHYB8 (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162WTP1_PHYB8) HSP 1 Score: 57.0 bits (136), Expect = 1.110e-6 Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 1
Query: 88 VVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAK---KVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSS 354
VV+ S +V L Q+ G+ ++ +V + E ++ K + R V+EG+++ +GDFT+RV GS Y+GL +E++YHPCS+
Sbjct: 41 VVKDSRFLYQVALAQQPGQVYCMVDGSVVVEAEKEMEIILSRLKNLWQLRQSVVVEGTSYEIGDFTLRVANILLGSAYKGLLLEIDYHPCSA 132
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A0E0M1S8_ORYPU (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0M1S8_ORYPU) HSP 1 Score: 56.6 bits (135), Expect = 1.290e-6 Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 1
Query: 166 VLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTC--RKGSTYRGLAMEVEYHPCSSVRDGEAMIE 381
VL D A M K Y R+ EG + LGDF +R+G C T RG+ MEVEY+P SS+ + A+++
Sbjct: 49 VLQADSAFPQVMEKLQSYKARVTLNFEGFQYQLGDFCLRIGKCVPNNSETLRGIMMEVEYYPLSSIENSRAVMD 122 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3177 ID=mRNA_3177|Name=jgi.p|Trimin1|160615|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_14:560154..562824+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGCTTTGGAGTGAACACCGCGGTGGCGTTCATAGGCGAGGGCGCGCGback to top protein sequence of jgi.p|Trimin1|160615 >Trimin1|160615|e_gw1.14.254.1 ID=Trimin1|160615|e_gw1.14.254.1|Name=jgi.p|Trimin1|160615|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAback to top mRNA from alignment at Contig_14:560154..562824+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3177 ID=mRNA_3177|Name=jgi.p|Trimin1|160615|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2671bp|location=Sequence derived from alignment at Contig_14:560154..562824+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_14:560154..562824+ >mRNA_3177 ID=mRNA_3177|Name=jgi.p|Trimin1|160615|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_14:560154..562824+ (Tribonema minus UTEX_B_3156 )back to top |