Trimin1|160615|e_gw1.14.254.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|160615
Unique NameTrimin1|160615|e_gw1.14.254.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length196
Homology
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 384 bits (985), Expect = 1.090e-134
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALSPLPCALEPMAIGNGAGASGCNGGSGATQAARNSRSAVGALQVCALFNTLLV 195
            MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALSPLPCALEPMAIGNGAGASGCNGGSGATQAARNSRSAVGALQVCALFNTLLV
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALSPLPCALEPMAIGNGAGASGCNGGSGATQAARNSRSAVGALQVCALFNTLLV 195          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.360e-33
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0
Query:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRAA-------TLEQVLVGDDALEA-DMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTF 139
            M+ GVN A  F+G   +++   YPF +   +RR+D   RV +VQEM +  +        L  VL G+D LEA   A +    TR+KA IEG A+ LGDF VRVG C+KG+ +RGLA+EVEY PC+ V DG +MIEA +P++D  GTF
Sbjct:    1 MKHGVNLAAPFVGM-KKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSYAAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTF 146          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A1X2GNR4_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GNR4_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 1.870e-7
Identity = 33/115 (28.70%), Postives = 61/115 (53.04%), Query Frame = 0
Query:   29 NVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAKKVPYPTRLKAV--------IEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 135
            N ++R     +      +G+R   L  ++ G   +EA+   +  + TRLK +        IEG+++ + DFT+RV     GSTY+GL +E++YHPC+  R+ + +    + ++ P
Sbjct:   48 NAMQRQGNDSKAMHQVALGQRPGQLYCMVDGGVVVEAEKEMESIF-TRLKNIWQLRQSITIEGTSYDIDDFTLRVANILVGSTYKGLLLEIDYHPCTIPRNADDLFREFIASILP 161          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A163K9Z0_ABSGL (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Absidia TaxID=4828 RepID=A0A163K9Z0_ABSGL)

HSP 1 Score: 58.9 bits (141), Expect = 2.590e-7
Identity = 34/118 (28.81%), Postives = 59/118 (50.00%), Query Frame = 0
Query:   25 FDRINVVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAK-------KVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAM----IEALLP 131
            +     V+R  + G+V     +G++   L  ++ G   +EA+          K  +  R    IEG++F + DFT+RV     GSTY+GL +E++YHPC    +   +    +E++LP
Sbjct:   44 YREAGAVQRQGKDGKVMYQVALGQQPGQLYCMIDGGVVIEAEKEMESILSRLKNIWQLRQSITIEGTSFDIDDFTLRVANILVGSTYKGLLLEIDYHPCFVPHNANDLFREFVESILP 161          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: I1BH49_RHIO9 (Mediator of RNA polymerase II transcription subunit 20 n=7 Tax=Rhizopus TaxID=4842 RepID=I1BH49_RHIO9)

HSP 1 Score: 58.9 bits (141), Expect = 2.620e-7
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 0
Query:   76 RLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 135
            R    IEG+++ +GDFT+RV     GSTY+GL +EV+YHPCS+  +   + +  + ++ P
Sbjct:  103 RQNVTIEGTSYEIGDFTLRVANILLGSTYKGLLLEVDYHPCSTPNNASELFKEFVQSIVP 162          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A068SAS8_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SAS8_9FUNG)

HSP 1 Score: 58.9 bits (141), Expect = 3.250e-7
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0
Query:   31 VRRSDEPGRV-CLVQEMGKRAATLEQVLVGDDALEADMAK-KVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSS 118
            V    +PG+V C+V            V+  +  LE  +++ K  +  R   VIEG++F +GDFT+RV     GSTY+GL +E+ YHPCS+
Sbjct:   82 VTLGQQPGQVYCMVDG--------SVVVEAEKELEIILSRLKNLWQMRQSVVIEGTSFEIGDFTLRVANILLGSTYKGLLLEISYHPCSA 163          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A1C7NR90_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NR90_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 4.020e-7
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 0
Query:   76 RLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 135
            R    IEG+++ +GDFT+RV     GSTY+GL +E+ YHPCS+  +   + +  + ++ P
Sbjct:   15 RQSVTIEGTSYEIGDFTLRVANILLGSTYKGLLLEIGYHPCSTPNNTSLLFQEFVQSIVP 74          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A0B7NLA6_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=9 Tax=Mucorineae TaxID=1344963 RepID=A0A0B7NLA6_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 6.710e-7
Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 0
Query:   76 RLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDP 135
            R    IEG+++ +GDFT+RV     GSTY+GL +E++YHPC++  +   + +  + ++ P
Sbjct:  101 RQSVTIEGTSYEIGDFTLRVANILLGSTYKGLLLEIDYHPCTTPNNASKLFQEFVESIVP 160          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A162WTP1_PHYB8 (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162WTP1_PHYB8)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-6
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 0
Query:   30 VVRRSDEPGRVCLVQEMGKRAATLEQVLVGDDALEADMAK---KVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSS 118
            VV+ S    +V L Q+ G+    ++  +V +   E ++     K  +  R   V+EG+++ +GDFT+RV     GS Y+GL +E++YHPCS+
Sbjct:   41 VVKDSRFLYQVALAQQPGQVYCMVDGSVVVEAEKEMEIILSRLKNLWQLRQSVVVEGTSYEIGDFTLRVANILLGSAYKGLLLEIDYHPCSA 132          
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Match: A0A0E0M1S8_ORYPU (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0M1S8_ORYPU)

HSP 1 Score: 56.6 bits (135), Expect = 1.290e-6
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0
Query:   56 VLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTC--RKGSTYRGLAMEVEYHPCSSVRDGEAMIE 127
            VL  D A    M K   Y  R+    EG  + LGDF +R+G C      T RG+ MEVEY+P SS+ +  A+++
Sbjct:   49 VLQADSAFPQVMEKLQSYKARVTLNFEGFQYQLGDFCLRIGKCVPNNSETLRGIMMEVEYYPLSSIENSRAVMD 122          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160615 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8G4_9STRA1.090e-134100.00Mediator of RNA polymerase II transcription subuni... [more]
D7G8Q6_ECTSI6.360e-3346.94Mediator of RNA polymerase II transcription subuni... [more]
A0A1X2GNR4_9FUNG1.870e-728.70Mediator of RNA polymerase II transcription subuni... [more]
A0A163K9Z0_ABSGL2.590e-728.81Mediator of RNA polymerase II transcription subuni... [more]
I1BH49_RHIO92.620e-740.00Mediator of RNA polymerase II transcription subuni... [more]
A0A068SAS8_9FUNG3.250e-737.78Mediator of RNA polymerase II transcription subuni... [more]
A0A1C7NR90_9FUNG4.020e-738.33Mediator of RNA polymerase II transcription subuni... [more]
A0A0B7NLA6_9FUNG6.710e-736.67Mediator of RNA polymerase II transcription subuni... [more]
A0A162WTP1_PHYB81.110e-633.70Mediator of RNA polymerase II transcription subuni... [more]
A0A0E0M1S8_ORYPU1.290e-639.19Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 82..132
e-value: 4.5E-10
score: 39.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:560154..562824 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160615mRNA_3177Tribonema minus UTEX_B_3156 mRNAContig_14 560154..562824 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|160615|e_gw1.14.254.1 ID=Trimin1|160615|e_gw1.14.254.1|Name=jgi.p|Trimin1|160615|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp
MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRA
ATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRK
GSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALSPLPCAL
EPMAIGNGAGASGCNGGSGATQAARNSRSAVGALQVCALFNTLLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20