mRNA_3089 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144543
Unique NamemRNA_3089
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|144543 vs. uniprot
Match: A0A835Z8I9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.610e-30
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 GPKICEIEGCTKKAQHGGDVTRLCVGHGGGPRCVHVDDDGAPCTKSARAGTD 156
            GPKICEIEGCTKKAQHGGDVTRLCVGHGGGPRCVHVDDDGAPCTKSARAGTD
Sbjct:    1 GPKICEIEGCTKKAQHGGDVTRLCVGHGGGPRCVHVDDDGAPCTKSARAGTD 52
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BLAST of jgi.p|Trimin1|144543 vs. uniprot
Match: A0A835Z7U3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 8.590e-5
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   58 VTRLCVGHGGGPRCVHVDDDGAPCTKSARAGTD 156
             T LC  HGG  RC+HVD DGAPCTKSA+A TD
Sbjct:    9 ATDLCKAHGG-KRCLHVDGDGAPCTKSAQAPTD 40
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144543 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z8I9_9STRA3.610e-30100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z7U3_9STRA8.590e-569.70Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1412665..1413204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144543|gw1.16.150.1
Hectar predicted targeting categoryother localisation
TranscriptId144865
TrackFilteredModels1
ProteinId144543
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144543gene_3089Tribonema minus UTEX_B_3156 geneContig_16 1412665..1413204 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3089_1exon_3089_1Tribonema minus UTEX_B_3156 exonContig_16 1412665..1413204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3089CDS_3089Tribonema minus UTEX_B_3156 CDSContig_16 1412665..1413204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144543Trimin1|144543|gw1.16.150.1Tribonema minus UTEX_B_3156 polypeptideContig_16 1412665..1413204 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3089 ID=mRNA_3089|Name=jgi.p|Trimin1|144543|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=540bp|location=Sequence derived from alignment at Contig_16:1412665..1413204- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTCCCAAGATCTGCGAGATCGAGGGGTGCACGAAGAAGGCGCAGCACGG
CGGCGACGTCACCCGGTTGTGTGTCGGTCACGGTGGAGGGCCGCGATGCG
TTCACGTCGACGACGACGGCGCCCCTTGTACCAAGAGCGCTAGGGCCGGC
ACTGACCTCTGCCAGCGGCACGGCGGTGGCAAGAGGTGTGCTCACGTCGA
CGACGACGGCGCCCCTTGTACCAACGGCGCTCAGGCGCCAACTGACCTCT
GTGTCGGCCACGGCGGAGGGCCGCGGTGCGTTCACGTCGACGACGACGGC
GCCCCTTGCACGAACGGCGCGAAGGGAGGCACCGACACTTGCAAAGCCCA
CGGCGGGGGCAAGAGGTGCCTTCACGTCGACGGGGACGGCGCCCCTTGTA
CGAAGAGCGCTCAGGCGCCAACTGACCTCTGCAAAATCCACGGCGGAGGG
CCGAGATGCCTTCACGTCGACGAGGACGGCACGCCCTGCACCAAGAGCGC
CGCGGGAGCCACCGACTTGTGCAAGGCGCACGGAGGAGGC
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protein sequence of jgi.p|Trimin1|144543

>Trimin1|144543|gw1.16.150.1 ID=Trimin1|144543|gw1.16.150.1|Name=jgi.p|Trimin1|144543|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=180bp
GPKICEIEGCTKKAQHGGDVTRLCVGHGGGPRCVHVDDDGAPCTKSARAG
TDLCQRHGGGKRCAHVDDDGAPCTNGAQAPTDLCVGHGGGPRCVHVDDDG
APCTNGAKGGTDTCKAHGGGKRCLHVDGDGAPCTKSAQAPTDLCKIHGGG
PRCLHVDEDGTPCTKSAAGATDLCKAHGGG
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mRNA from alignment at Contig_16:1412665..1413204-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3089 ID=mRNA_3089|Name=jgi.p|Trimin1|144543|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=540bp|location=Sequence derived from alignment at Contig_16:1412665..1413204- (Tribonema minus UTEX_B_3156 )
GGTCCCAAGATCTGCGAGATCGAGGGGTGCACGAAGAAGGCGCAGCACGG
CGGCGACGTCACCCGGTTGTGTGTCGGTCACGGTGGAGGGCCGCGATGCG
TTCACGTCGACGACGACGGCGCCCCTTGTACCAAGAGCGCTAGGGCCGGC
ACTGACCTCTGCCAGCGGCACGGCGGTGGCAAGAGGTGTGCTCACGTCGA
CGACGACGGCGCCCCTTGTACCAACGGCGCTCAGGCGCCAACTGACCTCT
GTGTCGGCCACGGCGGAGGGCCGCGGTGCGTTCACGTCGACGACGACGGC
GCCCCTTGCACGAACGGCGCGAAGGGAGGCACCGACACTTGCAAAGCCCA
CGGCGGGGGCAAGAGGTGCCTTCACGTCGACGGGGACGGCGCCCCTTGTA
CGAAGAGCGCTCAGGCGCCAACTGACCTCTGCAAAATCCACGGCGGAGGG
CCGAGATGCCTTCACGTCGACGAGGACGGCACGCCCTGCACCAAGAGCGC
CGCGGGAGCCACCGACTTGTGCAAGGCGCACGGAGGAGGC
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Coding sequence (CDS) from alignment at Contig_16:1412665..1413204-

>mRNA_3089 ID=mRNA_3089|Name=jgi.p|Trimin1|144543|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=540bp|location=Sequence derived from alignment at Contig_16:1412665..1413204- (Tribonema minus UTEX_B_3156 )
GGTCCCAAGATCTGCGAGATCGAGGGGTGCACGAAGAAGGCGCAGCACGG
CGGCGACGTCACCCGGTTGTGTGTCGGTCACGGTGGAGGGCCGCGATGCG
TTCACGTCGACGACGACGGCGCCCCTTGTACCAAGAGCGCTAGGGCCGGC
ACTGACCTCTGCCAGCGGCACGGCGGTGGCAAGAGGTGTGCTCACGTCGA
CGACGACGGCGCCCCTTGTACCAACGGCGCTCAGGCGCCAACTGACCTCT
GTGTCGGCCACGGCGGAGGGCCGCGGTGCGTTCACGTCGACGACGACGGC
GCCCCTTGCACGAACGGCGCGAAGGGAGGCACCGACACTTGCAAAGCCCA
CGGCGGGGGCAAGAGGTGCCTTCACGTCGACGGGGACGGCGCCCCTTGTA
CGAAGAGCGCTCAGGCGCCAACTGACCTCTGCAAAATCCACGGCGGAGGG
CCGAGATGCCTTCACGTCGACGAGGACGGCACGCCCTGCACCAAGAGCGC
CGCGGGAGCCACCGACTTGTGCAAGGCGCACGGAGGAGGC
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