mRNA_3078 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A835ZC11_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC11_9STRA) HSP 1 Score: 397 bits (1021), Expect = 4.980e-140 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 Query: 1 PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ 600 PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ Sbjct: 1 PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ 200
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A7S3XQP6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQP6_HETAK) HSP 1 Score: 159 bits (401), Expect = 7.120e-44 Identity = 82/206 (39.81%), Postives = 120/206 (58.25%), Query Frame = 1 Query: 1 PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH------ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ 600 P L +V+ G T +GRL++A+++PQ A Q K++ F+ L + ++ W+ YA S +V+ +D+ TI+VPAALPL L++G A + L ++ I HIV+AGH D + YDKTGTLT+EGDT V ++PA + AA + GG + ++ CHSL LE G L+GESLELEM A+GW+Q Sbjct: 117 PALGMVLRAGVYTTRGRLVQALQYPQDTKGFAHRQRKEAEQFVAFLLGLTVVITVWFVFYAIYFLKFSTYNVVIYSLDLTTILVPAALPLVLSVGVQMAFESLKEKRIHAATTTHIVTAGHADCMAYDKTGTLTQEGDTFVALVPADGFEGPLLTAAPR-------GGALEKALAGCHSLARLERGGALLGESLELEMLRASGWRQ 315
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: UPI000BA828A8 (probable cation-transporting ATPase 13A3 isoform X1 n=5 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA828A8) HSP 1 Score: 141 bits (356), Expect = 2.280e-35 Identity = 88/204 (43.14%), Postives = 121/204 (59.31%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHL------QDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQ 597 VL +V+ TG TAKG L+R+I P+ + +DSM F+LVLF I I +A Y++Y + +H S K +LR +DIVTI+VP ALP A+T+G A RL + GIFC +P I G + IC+DKTGTLT EG L G+I A + +F +L V + M+ CHSL +E G L G+ L+L+MF AT W+ Sbjct: 264 VLGVVIRTGFLTAKGELVRSILFPKPL---GFKFYQDSMKFILVLFCISAIGMA-YSLYLYIHRHASVSKAILRVLDIVTIVVPPALPAAMTVGTVYAQNRLKKSGIFCISPPRINIGGKLKLICFDKTGTLTEEGLDLWGVIEAK---SGRFQNLIHDPTHLSVENKLLATMATCHSLTMIE--GELTGDPLDLKMFAATKWE 458
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A1S3IYT1_LINUN (probable cation-transporting ATPase 13A3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IYT1_LINUN) HSP 1 Score: 139 bits (350), Expect = 1.190e-34 Identity = 82/200 (41.00%), Postives = 124/200 (62.00%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594 V ++VV TG ST+KGRL+RAI +P+ + D++ F+ +LF+I L +A Y +Y +++ +S +I+LR +DI+TI+VP ALP A+T+G A RL + GIFC +P I G +++IC+DKTGTLT +G L G++P L + P G +A M+ CHSL +E G L G+ L+L+MF +T W Sbjct: 289 VTAVVVRTGYSTSKGRLVRAILYPKQMDF---KFYTDAIRFVQILFLIALCGMA-YNLYVFIKRGESVRRIILRTLDIITIVVPVALPAAMTVGTIYAQNRLKKEGIFCISPPRINMCGKLNSICFDKTGTLTEDGLDLYGVVPVQEDRFLHVVQHPTDLPTGPFLA-AMATCHSLTMIE--GELKGDPLDLKMFESTNW 481
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A1S3HL31_LINUN (Cation-transporting ATPase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HL31_LINUN) HSP 1 Score: 139 bits (350), Expect = 1.460e-34 Identity = 82/200 (41.00%), Postives = 124/200 (62.00%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594 V ++VV TG ST+KGRL+RAI +P+ + D++ F+ +LF+I L +A Y +Y +++ +S +I+LR +DI+TI+VP ALP A+T+G A RL + GIFC +P I G +++IC+DKTGTLT +G L G++P L + P G +A M+ CHSL +E G L G+ L+L+MF +T W Sbjct: 373 VTAVVVRTGYSTSKGRLVRAILYPKQMDF---KFYTDAIRFVQILFLIALCGMA-YNLYVFIKRGESVRRIILRTLDIITIVVPVALPAAMTVGTIYAQNRLKKEGIFCISPPRINMCGKLNSICFDKTGTLTEDGLDLYGVVPVQEDRFLHVVQHPTDLPTGPFLA-AMATCHSLTMIE--GELKGDPLDLKMFESTNW 565
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A023F0T4_TRIIF (Cation-transporting ATPase (Fragment) n=3 Tax=Triatominae TaxID=70999 RepID=A0A023F0T4_TRIIF) HSP 1 Score: 137 bits (346), Expect = 4.990e-34 Identity = 80/201 (39.80%), Postives = 121/201 (60.20%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQ 597 V +LVVGT TAKG+LIR+I P+ + D++ F++V+F I I VA Y++Y + + ++LR +DIVTI+VP ALP A+T+G + RL + GIFCT+P I AG V +C+DKTGTLT EG ++ G++ + +L + P + + H M+ CHSL ++ C G+ L+L MF +TGW+ Sbjct: 325 VTALVVGTACMTAKGQLIRSIIFPKG---FGFDFYSDAIKFVVVMFFIASIGVA-YSLYLFISKGADVETVLLRSLDIVTIVVPPALPAAMTVGTVYSQNRLKKLGIFCTSPPRINVAGKVKLVCFDKTGTLTEEGLSVWGVLMSDGHSLLEIEEKPSNFPIMSPILHAMATCHSLTMIDGKIC--GDPLDLSMFESTGWE 519
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A8I6RFZ9_CIMLE (Cation-transporting ATPase n=2 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RFZ9_CIMLE) HSP 1 Score: 136 bits (342), Expect = 1.720e-33 Identity = 78/200 (39.00%), Postives = 123/200 (61.50%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594 VL+LVV TG+ TAKG+L+R+I P+ + +D++ +++V+F I L+ V ++Y + ++LR +DIVTI+VP ALP A+T+G A RL ++GIFCT+P I AG V +C+DKTGTLT EG ++ G++ + ++ + P + + H M++CHSL +E G L G+ L+L MF +T W Sbjct: 335 VLALVVRTGSMTAKGQLVRSIIFPKG---FGFDFYRDAIKYIIVMFFISLVGVIC-SMYLFINHGSDWETVLLRSLDIVTIVVPPALPAAMTVGTMYAQNRLKKKGIFCTSPPRINVAGKVKLVCFDKTGTLTEEGLSVWGVLTSDGRSMIEIEEKPESLPIMSPLLHAMASCHSLTKIE--GELCGDPLDLSMFKSTEW 528
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A8K0KBX6_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KBX6_LADFU) HSP 1 Score: 135 bits (340), Expect = 3.190e-33 Identity = 83/207 (40.10%), Postives = 124/207 (59.90%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQ---DVGGDMAHV------MSACHSLEPLESTGCLVGESLELEMFGATGWQ 597 VL++V TG STAKG L+++I PQ A + +DS+ F+ VLF I + + +Y+ Y ++++ I+LR +DI+TI+VP ALP A+T+G + RL + GIFC +P I G + +C+DKTGTLT +G L G+I A + S P Q D G D+ ++ACHSL +E G L G+ L+L+MF +TGW+ Sbjct: 345 VLAVVTRTGFSTAKGELVKSILFPQPL---AFKLYEDSLKFIFVLFCIAAVGM-FYSTYLYLKRNVDTETIILRTLDIITIVVPPALPAAMTVGTVYSQNRLRRLGIFCISPPRINICGKIKLVCFDKTGTLTEDGLDLWGVIEAKSGSFSAKPLAQNRDDAGSDLDPFSPLTISLAACHSLTLVE--GELTGDPLDLQMFQSTGWE 545
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A7K9WPA5_9PASS (Cation-transporting ATPase (Fragment) n=1 Tax=Rhipidura dahli TaxID=667186 RepID=A0A7K9WPA5_9PASS) HSP 1 Score: 134 bits (338), Expect = 5.950e-33 Identity = 79/200 (39.50%), Postives = 121/200 (60.50%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594 VL++V TG TAKG LI +I +P+ + + KD+M F+L L ++ LI Y+I VR G+I++R +D+VT++VP ALP A+T+G A RL Q+GIFC +P I G + +C+DKTGTLT EG + G++P + AA + P G + + ++ CHSL PL G L+G+ ++++M +TGW Sbjct: 387 VLAVVTRTGFCTAKGDLISSILYPKPVSF---KFYKDAMKFVLFLALLALIGTV-YSILILVRNQVPVGQIIIRALDLVTVIVPPALPAAMTVGTIYAQNRLKQQGIFCISPPRINLGGKLRLVCFDKTGTLTEEGLDVWGVVPLEGQRLQAAVRDPRRLPAGA-LLYALATCHSLAPLR--GQLLGDPVDIKMLESTGW 579
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: UPI0006D4EE76 (probable cation-transporting ATPase 13A3 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4EE76) HSP 1 Score: 134 bits (337), Expect = 8.050e-33 Identity = 77/201 (38.31%), Postives = 118/201 (58.71%), Query Frame = 1 Query: 4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKF---PHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQ 597 V +LVV TG+ TAKG+L+R+I P+ + +D++ F+ ++F + L F Y+ Y + + I+LR +DIVTI+VP LP A+T+G A +RL ++GIFCT+P I AG V +C+DKTGTLT EG ++ G++ ++ P + H M+ CHSL + G L G+ L+L MF +TGW+ Sbjct: 330 VTALVVRTGSMTAKGQLVRSILFPKE---FGFDFYRDAIRFIFIMFGVAL-FGTLYSAYLFLERGAGLENILLRSLDIVTIVVPPTLPAAMTVGTIYAQRRLKKKGIFCTSPPRINVAGKVKLVCFDKTGTLTEEGLSVWGVLMSNGKGLEDLVENPATLHIMTPFLHAMACCHSLTKIN--GVLCGDPLDLSMFESTGWE 524 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_3078 ID=mRNA_3078|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=600bp|location=Sequence derived from alignment at Contig_16:1304584..1306285+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCAGTGCTGTCACTAGTGGTGGGGACAGGTGCGAGCACAGCCAAGGGGCGback to top protein sequence of jgi.p|Trimin1|135235 >Trimin1|135235|gw1.16.49.1 ID=Trimin1|135235|gw1.16.49.1|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVback to top mRNA from alignment at Contig_16:1304584..1306285+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_3078 ID=mRNA_3078|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1702bp|location=Sequence derived from alignment at Contig_16:1304584..1306285+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_16:1304584..1306285+ >mRNA_3078 ID=mRNA_3078|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_16:1304584..1306285+ (Tribonema minus UTEX_B_3156 )back to top |