mRNA_3078 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135235
Unique NamemRNA_3078
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A835ZC11_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC11_9STRA)

HSP 1 Score: 397 bits (1021), Expect = 4.980e-140
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1
Query:    1 PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ 600
            PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ
Sbjct:    1 PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ 200          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A7S3XQP6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQP6_HETAK)

HSP 1 Score: 159 bits (401), Expect = 7.120e-44
Identity = 82/206 (39.81%), Postives = 120/206 (58.25%), Query Frame = 1
Query:    1 PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH------ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ 600
            P L +V+  G  T +GRL++A+++PQ     A  Q K++  F+  L  + ++   W+  YA      S   +V+  +D+ TI+VPAALPL L++G   A + L ++ I      HIV+AGH D + YDKTGTLT+EGDT V ++PA       + AA +       GG +   ++ CHSL  LE  G L+GESLELEM  A+GW+Q
Sbjct:  117 PALGMVLRAGVYTTRGRLVQALQYPQDTKGFAHRQRKEAEQFVAFLLGLTVVITVWFVFYAIYFLKFSTYNVVIYSLDLTTILVPAALPLVLSVGVQMAFESLKEKRIHAATTTHIVTAGHADCMAYDKTGTLTQEGDTFVALVPADGFEGPLLTAAPR-------GGALEKALAGCHSLARLERGGALLGESLELEMLRASGWRQ 315          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: UPI000BA828A8 (probable cation-transporting ATPase 13A3 isoform X1 n=5 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA828A8)

HSP 1 Score: 141 bits (356), Expect = 2.280e-35
Identity = 88/204 (43.14%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHL------QDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQ 597
            VL +V+ TG  TAKG L+R+I  P+       +  +DSM F+LVLF I  I +A Y++Y  + +H S  K +LR +DIVTI+VP ALP A+T+G   A  RL + GIFC +P  I   G +  IC+DKTGTLT EG  L G+I A    + +F +L        V   +   M+ CHSL  +E  G L G+ L+L+MF AT W+
Sbjct:  264 VLGVVIRTGFLTAKGELVRSILFPKPL---GFKFYQDSMKFILVLFCISAIGMA-YSLYLYIHRHASVSKAILRVLDIVTIVVPPALPAAMTVGTVYAQNRLKKSGIFCISPPRINIGGKLKLICFDKTGTLTEEGLDLWGVIEAK---SGRFQNLIHDPTHLSVENKLLATMATCHSLTMIE--GELTGDPLDLKMFAATKWE 458          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A1S3IYT1_LINUN (probable cation-transporting ATPase 13A3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IYT1_LINUN)

HSP 1 Score: 139 bits (350), Expect = 1.190e-34
Identity = 82/200 (41.00%), Postives = 124/200 (62.00%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594
            V ++VV TG ST+KGRL+RAI +P+       +   D++ F+ +LF+I L  +A Y +Y  +++ +S  +I+LR +DI+TI+VP ALP A+T+G   A  RL + GIFC +P  I   G +++IC+DKTGTLT +G  L G++P      L   + P     G  +A  M+ CHSL  +E  G L G+ L+L+MF +T W
Sbjct:  289 VTAVVVRTGYSTSKGRLVRAILYPKQMDF---KFYTDAIRFVQILFLIALCGMA-YNLYVFIKRGESVRRIILRTLDIITIVVPVALPAAMTVGTIYAQNRLKKEGIFCISPPRINMCGKLNSICFDKTGTLTEDGLDLYGVVPVQEDRFLHVVQHPTDLPTGPFLA-AMATCHSLTMIE--GELKGDPLDLKMFESTNW 481          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A1S3HL31_LINUN (Cation-transporting ATPase n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HL31_LINUN)

HSP 1 Score: 139 bits (350), Expect = 1.460e-34
Identity = 82/200 (41.00%), Postives = 124/200 (62.00%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594
            V ++VV TG ST+KGRL+RAI +P+       +   D++ F+ +LF+I L  +A Y +Y  +++ +S  +I+LR +DI+TI+VP ALP A+T+G   A  RL + GIFC +P  I   G +++IC+DKTGTLT +G  L G++P      L   + P     G  +A  M+ CHSL  +E  G L G+ L+L+MF +T W
Sbjct:  373 VTAVVVRTGYSTSKGRLVRAILYPKQMDF---KFYTDAIRFVQILFLIALCGMA-YNLYVFIKRGESVRRIILRTLDIITIVVPVALPAAMTVGTIYAQNRLKKEGIFCISPPRINMCGKLNSICFDKTGTLTEDGLDLYGVVPVQEDRFLHVVQHPTDLPTGPFLA-AMATCHSLTMIE--GELKGDPLDLKMFESTNW 565          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A023F0T4_TRIIF (Cation-transporting ATPase (Fragment) n=3 Tax=Triatominae TaxID=70999 RepID=A0A023F0T4_TRIIF)

HSP 1 Score: 137 bits (346), Expect = 4.990e-34
Identity = 80/201 (39.80%), Postives = 121/201 (60.20%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQ 597
            V +LVVGT   TAKG+LIR+I  P+       +   D++ F++V+F I  I VA Y++Y  + +      ++LR +DIVTI+VP ALP A+T+G   +  RL + GIFCT+P  I  AG V  +C+DKTGTLT EG ++ G++ +    +L   + P    +   + H M+ CHSL  ++   C  G+ L+L MF +TGW+
Sbjct:  325 VTALVVGTACMTAKGQLIRSIIFPKG---FGFDFYSDAIKFVVVMFFIASIGVA-YSLYLFISKGADVETVLLRSLDIVTIVVPPALPAAMTVGTVYSQNRLKKLGIFCTSPPRINVAGKVKLVCFDKTGTLTEEGLSVWGVLMSDGHSLLEIEEKPSNFPIMSPILHAMATCHSLTMIDGKIC--GDPLDLSMFESTGWE 519          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A8I6RFZ9_CIMLE (Cation-transporting ATPase n=2 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RFZ9_CIMLE)

HSP 1 Score: 136 bits (342), Expect = 1.720e-33
Identity = 78/200 (39.00%), Postives = 123/200 (61.50%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594
            VL+LVV TG+ TAKG+L+R+I  P+       +  +D++ +++V+F I L+ V   ++Y  +        ++LR +DIVTI+VP ALP A+T+G   A  RL ++GIFCT+P  I  AG V  +C+DKTGTLT EG ++ G++ +    ++   + P    +   + H M++CHSL  +E  G L G+ L+L MF +T W
Sbjct:  335 VLALVVRTGSMTAKGQLVRSIIFPKG---FGFDFYRDAIKYIIVMFFISLVGVIC-SMYLFINHGSDWETVLLRSLDIVTIVVPPALPAAMTVGTMYAQNRLKKKGIFCTSPPRINVAGKVKLVCFDKTGTLTEEGLSVWGVLTSDGRSMIEIEEKPESLPIMSPLLHAMASCHSLTKIE--GELCGDPLDLSMFKSTEW 528          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A8K0KBX6_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KBX6_LADFU)

HSP 1 Score: 135 bits (340), Expect = 3.190e-33
Identity = 83/207 (40.10%), Postives = 124/207 (59.90%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKFPHLQ---DVGGDMAHV------MSACHSLEPLESTGCLVGESLELEMFGATGWQ 597
            VL++V  TG STAKG L+++I  PQ     A +  +DS+ F+ VLF I  + + +Y+ Y  ++++     I+LR +DI+TI+VP ALP A+T+G   +  RL + GIFC +P  I   G +  +C+DKTGTLT +G  L G+I A   + S  P  Q   D G D+         ++ACHSL  +E  G L G+ L+L+MF +TGW+
Sbjct:  345 VLAVVTRTGFSTAKGELVKSILFPQPL---AFKLYEDSLKFIFVLFCIAAVGM-FYSTYLYLKRNVDTETIILRTLDIITIVVPPALPAAMTVGTVYSQNRLRRLGIFCISPPRINICGKIKLVCFDKTGTLTEDGLDLWGVIEAKSGSFSAKPLAQNRDDAGSDLDPFSPLTISLAACHSLTLVE--GELTGDPLDLQMFQSTGWE 545          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: A0A7K9WPA5_9PASS (Cation-transporting ATPase (Fragment) n=1 Tax=Rhipidura dahli TaxID=667186 RepID=A0A7K9WPA5_9PASS)

HSP 1 Score: 134 bits (338), Expect = 5.950e-33
Identity = 79/200 (39.50%), Postives = 121/200 (60.50%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAH---ILAASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGW 594
            VL++V  TG  TAKG LI +I +P+  +    +  KD+M F+L L ++ LI    Y+I   VR     G+I++R +D+VT++VP ALP A+T+G   A  RL Q+GIFC +P  I   G +  +C+DKTGTLT EG  + G++P     + AA + P     G  + + ++ CHSL PL   G L+G+ ++++M  +TGW
Sbjct:  387 VLAVVTRTGFCTAKGDLISSILYPKPVSF---KFYKDAMKFVLFLALLALIGTV-YSILILVRNQVPVGQIIIRALDLVTVIVPPALPAAMTVGTIYAQNRLKQQGIFCISPPRINLGGKLRLVCFDKTGTLTEEGLDVWGVVPLEGQRLQAAVRDPRRLPAGA-LLYALATCHSLAPLR--GQLLGDPVDIKMLESTGW 579          
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Match: UPI0006D4EE76 (probable cation-transporting ATPase 13A3 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4EE76)

HSP 1 Score: 134 bits (337), Expect = 8.050e-33
Identity = 77/201 (38.31%), Postives = 118/201 (58.71%), Query Frame = 1
Query:    4 VLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIVLIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAALQRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILAASKF---PHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQ 597
            V +LVV TG+ TAKG+L+R+I  P+       +  +D++ F+ ++F + L F   Y+ Y  + +      I+LR +DIVTI+VP  LP A+T+G   A +RL ++GIFCT+P  I  AG V  +C+DKTGTLT EG ++ G++ ++          P    +     H M+ CHSL  +   G L G+ L+L MF +TGW+
Sbjct:  330 VTALVVRTGSMTAKGQLVRSILFPKE---FGFDFYRDAIRFIFIMFGVAL-FGTLYSAYLFLERGAGLENILLRSLDIVTIVVPPTLPAAMTVGTIYAQRRLKKKGIFCTSPPRINVAGKVKLVCFDKTGTLTEEGLSVWGVLMSNGKGLEDLVENPATLHIMTPFLHAMACCHSLTKIN--GVLCGDPLDLSMFESTGWE 524          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135235 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZC11_9STRA4.980e-140100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3XQP6_HETAK7.120e-4439.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI000BA828A82.280e-3543.14probable cation-transporting ATPase 13A3 isoform X... [more]
A0A1S3IYT1_LINUN1.190e-3441.00probable cation-transporting ATPase 13A3 n=1 Tax=L... [more]
A0A1S3HL31_LINUN1.460e-3441.00Cation-transporting ATPase n=1 Tax=Lingula unguis ... [more]
A0A023F0T4_TRIIF4.990e-3439.80Cation-transporting ATPase (Fragment) n=3 Tax=Tria... [more]
A0A8I6RFZ9_CIMLE1.720e-3339.00Cation-transporting ATPase n=2 Tax=Cimex lectulari... [more]
A0A8K0KBX6_LADFU3.190e-3340.10Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A7K9WPA5_9PASS5.950e-3339.50Cation-transporting ATPase (Fragment) n=1 Tax=Rhip... [more]
UPI0006D4EE768.050e-3338.31probable cation-transporting ATPase 13A3 n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:1304584..1306285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135235|gw1.16.49.1
KEGG TC3.A.3.10
BRITEko00000,ko01000
KEGG koko:K13526,ko:K14951
GOsGO:0000323,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005488,GO:0005507,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005774,GO:0005775,GO:0005776,GO:0005886,GO:0005887,GO:0006457,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006879,GO:0006882,GO:0006914,GO:0006950,GO:0006979,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0008324,GO:0009056,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010042,GO:0010043,GO:0010506,GO:0010605,GO:0010821,GO:0010941,GO:0012505,GO:0012506,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015846,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0016241,GO:0016243,GO:0016310,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017157,GO:0018193,GO:0018197,GO:0018217,GO:0019222,GO:0019538,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030133,GO:0030145,GO:0030162,GO:0031090,GO:0031166,GO:0031224,GO:0031226,GO:0031300,GO:0031301,GO:0031310,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031902,GO:0031974,GO:0031982,GO:0032268,GO:0032269,GO:0032386,GO:0032535,GO:0032585,GO:0032879,GO:0032880,GO:0033043,GO:0033157,GO:0033554,GO:0034220,GO:0034248,GO:0034599,GO:0035091,GO:0036211,GO:0036477,GO:0042176,GO:0042177,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043492,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045921,GO:0046777,GO:0046872,GO:0046873,GO:0046914,GO:0046916,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0055065,GO:0055069,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0060341,GO:0060548,GO:0060627,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070300,GO:0070588,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071287,GO:0071294,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0080025,GO:0080090,GO:0090066,GO:0090087,GO:0090662,GO:0097458,GO:0097708,GO:0097734,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:0120025,GO:0140112,GO:1901214,GO:1901215,GO:1901564,GO:1901981,GO:1902047,GO:1902936,GO:1903135,GO:1903146,GO:1903362,GO:1903363,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903827,GO:1904350,GO:1904351,GO:1904714,GO:1904951,GO:1905037,GO:1905103,GO:1905123,GO:1905165,GO:1905166,GO:1990938
Preferred nameATP13A2
DescriptionP5-type ATPase cation transporter
COG categoryP
Max annot lvl33208|Metazoa
EggNOG OGsCOG0474@1|root,KOG0208@2759|Eukaryota,38CWV@33154|Opisthokonta,3BDNI@33208|Metazoa,3CRXC@33213|Bilateria,422AS@6656|Arthropoda,3SQHD@50557|Insecta,3ECTZ@33342|Paraneoptera
Evalue1.53e-32
Seed ortholog13249.RPRC000419-PA
Hectar predicted targeting categorysignal anchor
TranscriptId135557
TrackFilteredModels1
ProteinId135235
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135235gene_3078Tribonema minus UTEX_B_3156 geneContig_16 1304584..1306285 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3078_1exon_3078_1Tribonema minus UTEX_B_3156 exonContig_16 1304584..1305023 +
exon_3078_2exon_3078_2Tribonema minus UTEX_B_3156 exonContig_16 1305826..1305956 +
exon_3078_3exon_3078_3Tribonema minus UTEX_B_3156 exonContig_16 1306257..1306285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3078CDS_3078Tribonema minus UTEX_B_3156 CDSContig_16 1304584..1305023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135235Trimin1|135235|gw1.16.49.1Tribonema minus UTEX_B_3156 polypeptideContig_16 1304584..1306285 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3078 ID=mRNA_3078|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=600bp|location=Sequence derived from alignment at Contig_16:1304584..1306285+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCAGTGCTGTCACTAGTGGTGGGGACAGGTGCGAGCACAGCCAAGGGGCG
CCTCATCCGTGCCATCAAGCATCCACAGAGCAAGACCTCCCATGCAGACG
AACAGGAGAAGGACAGCATGGCGTTCTTGCTGGTGCTGTTTGTCATTGTC
CTGATATTTGTGGCCTGGTATGCCATCTACGCAGGCGTACGACAGCACCA
AAGCGCCGGCAAGATAGTTCTGCGCTGCATGGACATTGTGACCATCATGG
TTCCAGCTGCGCTGCCACTGGCTCTGACCATTGGTGCCAGTGCTGCACTA
CAGCGCCTGATGCAGCGTGGCATCTTCTGCACCGCACCAGACCACATAGT
GTCTGCTGGGCACGTGGACACCATATGCTATGACAAAACTGGCACGCTGA
CCAGGGAGGGCGACACACTGGTGGGTATCATACCAGCACACATATTGGCT
GCTTCCAAATTTCCGCATTTGCAGGATGTGGGTGGAGACATGGCACATGT
CATGAGCGCTTGCCATAGCTTGGAGCCGTTGGAGTCTACGGGATGCCTGG
TAGGGGAGTCACTTGAGCTAGAGATGTTTGGTGCCACCGGATGGCAGCAG
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protein sequence of jgi.p|Trimin1|135235

>Trimin1|135235|gw1.16.49.1 ID=Trimin1|135235|gw1.16.49.1|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp
PVLSLVVGTGASTAKGRLIRAIKHPQSKTSHADEQEKDSMAFLLVLFVIV
LIFVAWYAIYAGVRQHQSAGKIVLRCMDIVTIMVPAALPLALTIGASAAL
QRLMQRGIFCTAPDHIVSAGHVDTICYDKTGTLTREGDTLVGIIPAHILA
ASKFPHLQDVGGDMAHVMSACHSLEPLESTGCLVGESLELEMFGATGWQQ
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mRNA from alignment at Contig_16:1304584..1306285+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3078 ID=mRNA_3078|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1702bp|location=Sequence derived from alignment at Contig_16:1304584..1306285+ (Tribonema minus UTEX_B_3156 )
CCAGTGCTGTCACTAGTGGTGGGGACAGGTGCGAGCACAGCCAAGGGGCG CCTCATCCGTGCCATCAAGCATCCACAGAGCAAGACCTCCCATGCAGACG AACAGGAGAAGGACAGCATGGCGTTCTTGCTGGTGCTGTTTGTCATTGTC CTGATATTTGTGGCCTGGTATGCCATCTACGCAGGCGTACGACAGCACCA AAGCGCCGGCAAGATAGTTCTGCGCTGCATGGACATTGTGACCATCATGG TTCCAGCTGCGCTGCCACTGGCTCTGACCATTGGTGCCAGTGCTGCACTA CAGCGCCTGATGCAGCGTGGCATCTTCTGCACCGCACCAGACCACATAGT GTCTGCTGGGCACGTGGACACCATATGCTATGACAAAACTGGCACGCTGA CCAGGGAGGGCGACACACTGGTGGGTATCATACCAGCACAGTCGCACAGC CTCAAGGTGGCACAGTCCCTGCCTGACATGGCTGCATGGGGGCTCACCAA GGTGAGGCGTCATGCATGTATATCCCTCGTTCATACTTTGAGGCATATTC ACTCAACAGAGAGCATGAGCTTGACAAACTCATAGTCCGTGAGCCTTTAG GTGGCCTGTCATTGTCTGTATGCATGAGATGGTCGCCCCTGGTTTATTTT TCTCCATCAGGCCCTTGTTGGCAGCACGATTGCTTTCACTGCTTCCCCTG GCACTATTGCAATATTGAGCATATTGAGCGTGGGGTGCTGTTGCAGCAAC ACGCCTGCGTGCCATTGGTTTGTTGCCGCATCACCGTGCTACCAGTCTGC TCATTGTCCACTCATTTTACATCGCAACTGCTACTCAGGCTTGCCTATTG CTGGAATTTCAATGGATTATTGTTTTAAGCCATACCTGAATGGTCCACTT TCCCAACAACACTGTGTTGATGTGCCTTTCTGCTGACACAGTAGCTGCGG TCATGAAATGCGCAGCTCTCCAATATAACATGATGATGCGCACATACTGT GATGTGCTTACCTCACATGTGTGGCTGCTGCTCCTGTGTCAGTGCCATTG CATGATGGGTGTCAAGGATGGTAGCACAGCAATAAGTCACAAGCGCTTGT CTTGACCAGTCACTGAAAAATGAGTCGTTCCCAATATTCAAAGACCTGCC TGACTGACGCATCATACAACTGTAATCAAATAAATGGGTGTTGTAACTCA CAGGATCTCATTTCAATGCATTAGATTTATGTGCGTCAGCAGCATATTGG CTGCTTCCAAATTTCCGCATTTGCAGGATGTGGGTGGAGACATGGCACAT GTCATGAGCGCTTGCCATAGCTTGGAGCCGTTGGAGTCTACGGGATGCCT GGTAGGGGAGTCACTTGAGCTAGGTGAGCACAGCTTCCATTGCGCAGTCT GCAACTCAGCGCGGGCTTTGTGTGTTCTTGGACGCTGCTATAGTCGTCAT AACCCATACGCATTCACTTGACGTTTTTCCTTAAGCATGCGGTGGAGAGA ATATGGTACTTGGAAGCATCTGGGTTAGCGGCAGAGTGTGCGTTTTTGCT TCTGAGTATCATGGTAAATGCAAATTCAGGCGAGATGCTGGCATTACTTG ACGAGCGTCCAACACTGGTGCTGGCATTGTGTGCATGGCTGTTCACTGGT GCCATGCTCCACTGCCTCCGCAGAGATGTTTGGTGCCACCGGATGGCAGC AG
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Coding sequence (CDS) from alignment at Contig_16:1304584..1306285+

>mRNA_3078 ID=mRNA_3078|Name=jgi.p|Trimin1|135235|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_16:1304584..1306285+ (Tribonema minus UTEX_B_3156 )
CCAGTGCTGTCACTAGTGGTGGGGACAGGTGCGAGCACAGCCAAGGGGCG
CCTCATCCGTGCCATCAAGCATCCACAGAGCAAGACCTCCCATGCAGACG
AACAGGAGAAGGACAGCATGGCGTTCTTGCTGGTGCTGTTTGTCATTGTC
CTGATATTTGTGGCCTGGTATGCCATCTACGCAGGCGTACGACAGCACCA
AAGCGCCGGCAAGATAGTTCTGCGCTGCATGGACATTGTGACCATCATGG
TTCCAGCTGCGCTGCCACTGGCTCTGACCATTGGTGCCAGTGCTGCACTA
CAGCGCCTGATGCAGCGTGGCATCTTCTGCACCGCACCAGACCACATAGT
GTCTGCTGGGCACGTGGACACCATATGCTATGACAAAACTGGCACGCTGA
CCAGGGAGGGCGACACACTGGTGGGTATCATACCAGCACACATATTGGCT
GCTTCCAAATTTCCGCATTTGCAGGATGTGGGTGGAGACATGGCACATGT
CATGAGCGCTTGCCATAGCTTGGAGCCGTTGGAGTCTACGGGATGCCTGG
TAGGGGAGTCACTTGAGCTAGAGATGTTTGGTGCCACCGGATGGCAGCAG
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