mRNA_2944 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A835Z8L6_9STRA (Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L6_9STRA) HSP 1 Score: 301 bits (771), Expect = 2.820e-102 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 2
Query: 104 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLGERRGAQS 562
MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLGERRGAQS
Sbjct: 1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLGERRGAQS 153
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: D7G6X7_ECTSI (Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X7_ECTSI) HSP 1 Score: 166 bits (420), Expect = 6.450e-49 Identity = 82/136 (60.29%), Postives = 108/136 (79.41%), Query Frame = 2
Query: 104 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDK 511
MRK++ + R+GR +HR+AML+NMVTS I HERI+TTVP+AK L+ +AD MVT AK GT H +R AQ +++ A+ KLF+VLGPRY++RPGGYTR++KL PR GD+ADM +IEFVDR+GELRPAR VG+ +
Sbjct: 1 MRKRV---NMHRLGRDMSHRLAMLRNMVTSFIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQGVVRENAAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAIIEFVDREGELRPARQVGQTR 133
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S3QJX6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJX6_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.220e-44 Identity = 73/120 (60.83%), Postives = 98/120 (81.67%), Query Frame = 2
Query: 137 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARP 496
++GR +HR AML+NMVTSLI HERI TTVPKAK ++ LA++++ HAK G+LHSRRLA ++++ A+ KLF+VLGPRY++R GGYTR+LKL+ PR GD A M ++E+VDR GE+R ARP
Sbjct: 9 KLGRTASHRWAMLRNMVTSLIYHERIVTTVPKAKEVRHLAEKIIKHAKNGSLHSRRLADKVVREEPAVTKLFEVLGPRYQDREGGYTRVLKLSKPRQGDNAPMAVLEYVDRPGEIRAARP 128
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S0ASE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASE6_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.750e-44 Identity = 82/147 (55.78%), Postives = 107/147 (72.79%), Query Frame = 2
Query: 101 AMRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLG 541
AM+K+L ++GR AH+ AML+NMVTSLI HERI TT+PKAK L+ LAD+MV K+G+LHSRR A + I+++ L KLF++LGPRYEER GGYTR+LKL+ PR GD AD+ +IE+VDR GE+R ARP +E + G
Sbjct: 38 AMKKRLA---FRKLGRQPAHKWAMLRNMVTSLIKHERIVTTLPKAKELRKLADKMVGLGKSGSLHSRRQAGAVIRERPVLTKLFEILGPRYEEREGGYTRVLKLSRPREGDNADLAVIEYVDRPGEVRAARPPRARRERLLATTTHG 181
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S2LPJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPJ0_9STRA) HSP 1 Score: 146 bits (369), Expect = 3.490e-41 Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 2
Query: 104 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPML 535
MRK++ ++ R H+ AML+NMVTSLI HERI TT PKAK LK LA+ M+ K G+LH+RR A + +++K AL KLF+VLGPRY ER GGYTR+L+LA PR GD A M +IE+VDR GE+R A+P ++ + +L
Sbjct: 1 MRKRIA---FRKLSRTPTHKWAMLRNMVTSLIYHERIVTTTPKAKELKRLAEWMIGFGKDGSLHARRQADAILREKPALTKLFEVLGPRYAERDGGYTRVLQLAKPRTGDNAPMSIIEYVDRPGEIRAAKPPASKQKSVLADVL 141
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A6T7JZV4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7JZV4_9STRA) HSP 1 Score: 145 bits (367), Expect = 7.440e-41 Identity = 74/139 (53.24%), Postives = 104/139 (74.82%), Query Frame = 2
Query: 104 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPF 520
MRK+L + ++GR H+ AML+NMVTSLI HERI TT+PKAK L+ LAD++V +AK G +H+++LA +++K + KLF+V+GPRYE+R GGYTR++KL+ PR GD A M +IE+VDR GE+R AR K K+ +
Sbjct: 1 MRKRLAQ--FRKLGRTPDHKWAMLRNMVTSLIKHERIVTTLPKAKELRHLADKVVGYAKKGDVHAKQLALRVVREKPMVTKLFEVMGPRYEDRDGGYTRVMKLSRPRRGDNAPMAVIEYVDRPGEIRAARVPEKRKQKY 137
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S3PMY3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMY3_9STRA) HSP 1 Score: 145 bits (366), Expect = 8.770e-41 Identity = 73/124 (58.87%), Postives = 98/124 (79.03%), Query Frame = 2
Query: 137 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKD 508
++ R ++HR AML+NMVTSLI +ERIKTTVPKAK L+ +AD MVT K G+LH+RR + ++DK A+ KLF VLGPRY RPGG+TRI+++ R GD ADMC++EFVD++GELR A+PV ++
Sbjct: 9 KLNRTSSHRWAMLRNMVTSLIHYERIKTTVPKAKELRRVADWMVTLGKKGSLHARRQSLKVVRDKAAMHKLFDVLGPRYINRPGGFTRIVRVGHRR-GDAADMCVMEFVDKEGELRKAKPVDEN 131
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S3M8Y7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8Y7_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.190e-40 Identity = 77/131 (58.78%), Postives = 96/131 (73.28%), Query Frame = 2
Query: 104 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARP 496
MRK+ L + ++G HR AML+NMVTSLI HERI TTV +AK ++ A++MVTHAK G L RRLA +++K AL KLF++LGPRY ER GGYTR++KL PR GD A M +EFVDR+GELR ARP
Sbjct: 1 MRKRNL---IKQLGFDDTHRRAMLRNMVTSLIKHERIMTTVARAKVMRRFAEKMVTHAKKGNLTHRRLAAGFVREKPALVKLFEILGPRYAEREGGYTRVMKLMKPRRGDSAAMAYVEFVDREGELRKARP 128
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: W7U3L1_9STRA (Ribosomal protein l17 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3L1_9STRA) HSP 1 Score: 144 bits (363), Expect = 2.890e-40 Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 2
Query: 137 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARP 496
++GR ++HR AML+NMVTSL+ HERI+TT KAK L+ +AD+MVT AK G+LH+RR A I+ K L KLF VLGPRY R GGYTR+LKL R GD A+M LIEFV R GELRPARP
Sbjct: 5 KLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: F0Y9R6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9R6_AURAN) HSP 1 Score: 142 bits (359), Expect = 3.640e-40 Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 2
Query: 137 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELR 484
++ R ++HR+AML+NMVTSLI ERI+TT PKAK L+ A++++T+AK G LH RLA ++++ AL KLF+VLGPRY R GGYTRILKL PR GDKA M +IEFVDR GELR
Sbjct: 4 KLNRTSSHRLAMLRNMVTSLIKWERIRTTTPKAKTLRPYAERLITYAKKGDLHGMRLAARVVREQSALRKLFEVLGPRYAARRGGYTRILKLNEPRAGDKAPMSVIEFVDRDGELR 119 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_2944 ID=mRNA_2944|Name=jgi.p|Trimin1|347795|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=666bp|location=Sequence derived from alignment at Contig_16:253724..255117+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCTGCTGCCAGCCTTTGCGCAACAGCTGCTTCTCAATCTGATCGCAGAGback to top protein sequence of jgi.p|Trimin1|347795 >Trimin1|347795|estExt_Genemark1.C_Ctg_160033 ID=Trimin1|347795|estExt_Genemark1.C_Ctg_160033|Name=jgi.p|Trimin1|347795|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLback to top mRNA from alignment at Contig_16:253724..255117+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_2944 ID=mRNA_2944|Name=jgi.p|Trimin1|347795|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1394bp|location=Sequence derived from alignment at Contig_16:253724..255117+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_16:253724..255117+ >mRNA_2944 ID=mRNA_2944|Name=jgi.p|Trimin1|347795|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_16:253724..255117+ (Tribonema minus UTEX_B_3156 )back to top |