Trimin1|347795|estExt_Genemark1.C_Ctg_160033 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347795
Unique NameTrimin1|347795|estExt_Genemark1.C_Ctg_160033
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length154
Homology
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A835Z8L6_9STRA (Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L6_9STRA)

HSP 1 Score: 302 bits (774), Expect = 6.770e-104
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLGERRGAQS 153
            MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLGERRGAQS
Sbjct:    1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLGERRGAQS 153          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: D7G6X7_ECTSI (Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X7_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.080e-50
Identity = 82/136 (60.29%), Postives = 108/136 (79.41%), Query Frame = 0
Query:    1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDK 136
            MRK++    + R+GR  +HR+AML+NMVTS I HERI+TTVP+AK L+ +AD MVT AK GT H +R AQ  +++  A+ KLF+VLGPRY++RPGGYTR++KL  PR GD+ADM +IEFVDR+GELRPAR VG+ +
Sbjct:    1 MRKRV---NMHRLGRDMSHRLAMLRNMVTSFIYHERIRTTVPRAKELRKVADNMVTLAKKGTPHHQRQAQGVVRENAAVVKLFEVLGPRYKDRPGGYTRVMKLQKPRKGDQADMAIIEFVDREGELRPARQVGQTR 133          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S3QJX6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJX6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.080e-45
Identity = 73/120 (60.83%), Postives = 98/120 (81.67%), Query Frame = 0
Query:   12 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARP 131
            ++GR  +HR AML+NMVTSLI HERI TTVPKAK ++ LA++++ HAK G+LHSRRLA   ++++ A+ KLF+VLGPRY++R GGYTR+LKL+ PR GD A M ++E+VDR GE+R ARP
Sbjct:    9 KLGRTASHRWAMLRNMVTSLIYHERIVTTVPKAKEVRHLAEKIIKHAKNGSLHSRRLADKVVREEPAVTKLFEVLGPRYQDREGGYTRVLKLSKPRQGDNAPMAVLEYVDRPGEIRAARP 128          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S0ASE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ASE6_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.460e-44
Identity = 80/140 (57.14%), Postives = 105/140 (75.00%), Query Frame = 0
Query:    1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFM 140
            M+K+L      ++GR  AH+ AML+NMVTSLI HERI TT+PKAK L+ LAD+MV   K+G+LHSRR A + I+++  L KLF++LGPRYEER GGYTR+LKL+ PR GD AD+ +IE+VDR GE+R ARP    +E  +
Sbjct:   39 MKKRL---AFRKLGRQPAHKWAMLRNMVTSLIKHERIVTTLPKAKELRKLADKMVGLGKSGSLHSRRQAGAVIRERPVLTKLFEILGPRYEEREGGYTRVLKLSRPREGDNADLAVIEYVDRPGEVRAARPPRARRERLL 175          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S2LPJ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPJ0_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.390e-42
Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 0
Query:    1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPML 144
            MRK++      ++ R   H+ AML+NMVTSLI HERI TT PKAK LK LA+ M+   K G+LH+RR A + +++K AL KLF+VLGPRY ER GGYTR+L+LA PR GD A M +IE+VDR GE+R A+P    ++  +  +L
Sbjct:    1 MRKRI---AFRKLSRTPTHKWAMLRNMVTSLIYHERIVTTTPKAKELKRLAEWMIGFGKDGSLHARRQADAILREKPALTKLFEVLGPRYAERDGGYTRVLQLAKPRTGDNAPMSIIEYVDRPGEIRAAKPPASKQKSVLADVL 141          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A6T7JZV4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7JZV4_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.110e-42
Identity = 74/139 (53.24%), Postives = 104/139 (74.82%), Query Frame = 0
Query:    1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPF 139
            MRK+L +    ++GR   H+ AML+NMVTSLI HERI TT+PKAK L+ LAD++V +AK G +H+++LA   +++K  + KLF+V+GPRYE+R GGYTR++KL+ PR GD A M +IE+VDR GE+R AR   K K+ +
Sbjct:    1 MRKRLAQ--FRKLGRTPDHKWAMLRNMVTSLIKHERIVTTLPKAKELRHLADKVVGYAKKGDVHAKQLALRVVREKPMVTKLFEVMGPRYEDRDGGYTRVMKLSRPRRGDNAPMAVIEYVDRPGEIRAARVPEKRKQKY 137          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S3PMY3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMY3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.570e-42
Identity = 73/124 (58.87%), Postives = 98/124 (79.03%), Query Frame = 0
Query:   12 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARPVGKD 135
            ++ R ++HR AML+NMVTSLI +ERIKTTVPKAK L+ +AD MVT  K G+LH+RR +   ++DK A+ KLF VLGPRY  RPGG+TRI+++   R GD ADMC++EFVD++GELR A+PV ++
Sbjct:    9 KLNRTSSHRWAMLRNMVTSLIHYERIKTTVPKAKELRRVADWMVTLGKKGSLHARRQSLKVVRDKAAMHKLFDVLGPRYINRPGGFTRIVRVGHRR-GDAADMCVMEFVDKEGELRKAKPVDEN 131          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: A0A7S3M8Y7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8Y7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.160e-41
Identity = 77/131 (58.78%), Postives = 96/131 (73.28%), Query Frame = 0
Query:    1 MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARP 131
            MRK+ L   + ++G    HR AML+NMVTSLI HERI TTV +AK ++  A++MVTHAK G L  RRLA   +++K AL KLF++LGPRY ER GGYTR++KL  PR GD A M  +EFVDR+GELR ARP
Sbjct:    1 MRKRNL---IKQLGFDDTHRRAMLRNMVTSLIKHERIMTTVARAKVMRRFAEKMVTHAKKGNLTHRRLAAGFVREKPALVKLFEILGPRYAEREGGYTRVMKLMKPRRGDSAAMAYVEFVDREGELRKARP 128          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: W7U3L1_9STRA (Ribosomal protein l17 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3L1_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.840e-41
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 0
Query:   12 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELRPARP 131
            ++GR ++HR AML+NMVTSL+ HERI+TT  KAK L+ +AD+MVT AK G+LH+RR A   I+ K  L KLF VLGPRY  R GGYTR+LKL   R GD A+M LIEFV R GELRPARP
Sbjct:    5 KLGRTSSHRWAMLRNMVTSLVEHERIRTTTAKAKELRRVADRMVTWAKDGSLHARRQAAMVIRTKEHLKKLFDVLGPRYLTRAGGYTRVLKLQRFRPGDAAEMSLIEFVGRPGELRPARP 124          
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Match: F0Y9R6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9R6_AURAN)

HSP 1 Score: 142 bits (359), Expect = 3.600e-41
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 0
Query:   12 RMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVLADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRILKLATPRLGDKADMCLIEFVDRQGELR 127
            ++ R ++HR+AML+NMVTSLI  ERI+TT PKAK L+  A++++T+AK G LH  RLA   ++++ AL KLF+VLGPRY  R GGYTRILKL  PR GDKA M +IEFVDR GELR
Sbjct:    4 KLNRTSSHRLAMLRNMVTSLIKWERIRTTTPKAKTLRPYAERLITYAKKGDLHGMRLAARVVREQSALRKLFEVLGPRYAARRGGYTRILKLNEPRAGDKAPMSVIEFVDRDGELR 119          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347795 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8L6_9STRA6.770e-104100.00Chloroplast 50S ribosomal protein 17 n=1 Tax=Tribo... [more]
D7G6X7_ECTSI4.080e-5060.29Chloroplast 50S ribosomal protein 17 n=2 Tax=Ectoc... [more]
A0A7S3QJX6_9STRA2.080e-4560.83Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0ASE6_9STRA1.460e-4457.14Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2LPJ0_9STRA3.390e-4252.78Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6T7JZV4_9STRA5.110e-4253.24Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3PMY3_9STRA8.570e-4258.87Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3M8Y7_9STRA1.160e-4158.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7U3L1_9STRA2.840e-4163.33Ribosomal protein l17 n=1 Tax=Nannochloropsis gadi... [more]
F0Y9R6_AURAN3.600e-4161.21Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 23..120
e-value: 1.2E-34
score: 119.1
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 11..121
e-value: 2.2E-39
score: 132.2
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 11..132
IPR000456Ribosomal protein L17PROSITEPS01167RIBOSOMAL_L17coord: 37..59
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 8..120
score: 24.740494
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10Ribosomal protein L17coord: 1..120
e-value: 2.8E-44
score: 152.2
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 11..122
NoneNo IPR availablePANTHERPTHR14413:SF1639S RIBOSOMAL PROTEIN L17, MITOCHONDRIALcoord: 11..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:253827..255016 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347795mRNA_2944Tribonema minus UTEX_B_3156 mRNAContig_16 253724..255117 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347795|estExt_Genemark1.C_Ctg_160033 ID=Trimin1|347795|estExt_Genemark1.C_Ctg_160033|Name=jgi.p|Trimin1|347795|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MRKQLLKGGLSRMGRGTAHRIAMLKNMVTSLITHERIKTTVPKAKNLKVL
ADQMVTHAKTGTLHSRRLAQSTIQDKGALDKLFKVLGPRYEERPGGYTRI
LKLATPRLGDKADMCLIEFVDRQGELRPARPVGKDKEPFMLPMLLGERRG
AQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000456Ribosomal_L17
IPR036373Ribosomal_L17_sf